Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_92.g28124 Utricularia gibba HOM05D004439 ORTHO05D005670 3.3e-305 1050.8 504 100.0
MSTRG.1809 Avicennia marina HOM05D004439 ORTHO05D005670 4.1e-215 751.5 449 77.7
SalBow1G1193 Salvia bowleyana HOM05D004439 ORTHO05D005670 3.3e-212 741.9 447 77.0
Migut.A00663 Erythranthe guttata HOM05D004439 ORTHO05D005670 1.2e-206 723.4 444 75.9
Dinv38840 Davidia involucrata HOM05D004439 ORTHO05D005670 3.4e-201 705.3 452 71.0
CANSAT21G0267 Cannabis sativa HOM05D004439 ORTHO05D005670 2.2e-200 702.6 447 73.2
Sopen08g030490 Solanum pennellii HOM05D004439 ORTHO05D005670 3.2e-199 698.7 445 71.9
Nn2g14269 Nelumbo nucifera HOM05D004439 ORTHO05D005670 1.2e-198 696.8 452 71.5
GSVIVG01019518001 Vitis vinifera HOM05D004439 ORTHO05D005670 3.5e-198 695.3 449 72.2
EL10Ac5g12905 Beta vulgaris HOM05D004439 ORTHO05D005670 6.0e-198 694.5 452 71.7
CSS0017274 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.3e-197 693.3 453 69.8
CSS0021285 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 1.3e-197 693.3 453 69.8
Peaxi162Scf00074g01028 Petunia axillaris HOM05D004439 ORTHO05D005670 2.3e-197 692.6 449 71.5
Solyc08g082200.3 Solanum lycopersicum HOM05D004439 ORTHO05D005670 3.9e-197 691.8 445 71.2
Gohir.D12G237200 Gossypium hirsutum HOM05D004439 ORTHO05D005670 5.1e-197 691.4 447 71.6
Duzib205G1996 Durio zibethinus HOM05D004439 ORTHO05D005670 1.1e-196 690.3 452 71.0
Gorai.008G253800 Gossypium raimondii HOM05D004439 ORTHO05D005670 4.3e-196 688.3 447 71.1
TAR629G1063 Trochodendron aralioides HOM05D004439 ORTHO05D005670 4.3e-196 688.3 452 69.9
Cc08_g15970 Coffea canephora HOM05D004439 ORTHO05D005670 5.6e-196 688.0 452 70.1
Ciclev10020115m.g Citrus clementina HOM05D004439 ORTHO05D005670 7.3e-196 687.6 447 72.3
SGA_v2.0_scaffold305G47954 Striga asiatica HOM05D004439 ORTHO05D005670 7.3e-196 687.6 491 68.4
vmacro13901 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 1.3e-195 686.8 452 69.5
Atru.chr9.2010 Acer truncatum HOM05D004439 ORTHO05D005670 1.6e-195 686.4 450 71.1
Cfa023584 Carpinus fangiana HOM05D004439 ORTHO05D005670 2.8e-195 685.6 447 69.6
Manes.11G128600 Manihot esculenta HOM05D004439 ORTHO05D005670 1.1e-194 683.7 447 70.9
Potri.003G104700 Populus trichocarpa HOM05D004439 ORTHO05D005670 1.1e-194 683.7 450 70.2
Thecc.03G296500 Theobroma cacao HOM05D004439 ORTHO05D005670 3.1e-194 682.2 452 70.4
COL.COLO4_10686 Corchorus olitorius HOM05D004439 ORTHO05D005670 6.9e-194 681.0 465 68.2
Eucgr.E00854 Eucalyptus grandis HOM05D004439 ORTHO05D005670 1.5e-193 679.9 453 69.8
Duzib084G1213 Durio zibethinus HOM05D004439 ORTHO05D005670 5.8e-193 677.9 459 69.1
Prupe.5G117700 Prunus persica HOM05D004439 ORTHO05D005670 5.8e-193 677.9 458 70.1
MBI07_g27257_MAGBIO Magnolia biondii HOM05D004439 ORTHO05D005670 1.3e-192 676.8 446 69.7
TWI81G0104 Tripterygium wilfordii HOM05D004439 ORTHO05D005670 2.4e-191 672.5 452 69.0
CAN.G532.113 Capsicum annuum HOM05D004439 ORTHO05D005670 4.2e-191 671.8 450 68.9
CiPaw.11G122200 Carya illinoinensis HOM05D004439 ORTHO05D005670 7.1e-191 671.0 455 69.2
CsaV3_5G039570 Cucumis sativus L. HOM05D004439 ORTHO05D005670 1.2e-190 670.2 456 68.9
RcHm_v2.0_Chr7g0195041 Rosa chinensis HOM05D004439 ORTHO05D005670 6.7e-189 664.5 457 68.7
MD06G1105400 Malus domestica HOM05D004439 ORTHO05D005670 3.3e-188 662.1 442 69.7
Sc01g0010250 Simmondsia chinensis HOM05D004439 ORTHO05D005670 5.6e-188 661.4 454 66.5
QL02p030851 Quercus lobata HOM05D004439 ORTHO05D005670 9.6e-188 660.6 449 68.2
FvH4_5g04460 Fragaria vesca HOM05D004439 ORTHO05D005670 1.8e-186 656.4 439 69.2
Lj1g0018659 Lotus japonicus HOM05D004439 ORTHO05D005670 2.4e-186 656.0 427 71.9
Lalb_Chr16g0376971 Lupinus albus HOM05D004439 ORTHO05D005670 9.0e-186 654.1 446 68.2
Nitab4.5_0001231g0030 Nicotiana tabacum HOM05D004439 ORTHO05D005670 9.0e-186 654.1 450 67.8
ATR0320G020 Amborella trichopoda HOM05D004439 ORTHO05D005670 1.5e-185 653.3 447 66.7
Glyma.02G286600 Glycine max HOM05D004439 ORTHO05D005670 7.6e-185 651.0 428 71.0
Phvul.009G207100 Phaseolus vulgaris HOM05D004439 ORTHO05D005670 7.6e-185 651.0 427 70.0
Hund11394 Selenicereus undatus HOM05D004439 ORTHO05D005670 7.6e-185 651.0 450 67.6
vmacro05785 Vaccinium macrocarpon HOM05D004439 ORTHO05D005670 7.6e-185 651.0 438 68.7
VMungo0647G0731 Vigna mungo HOM05D004439 ORTHO05D005670 1.3e-184 650.2 426 70.4
Sed0005226 Sechium edule HOM05D004439 ORTHO05D005670 1.7e-184 649.8 445 68.3
Lsat_1_v5_gn_6_12240 Lactuca sativa HOM05D004439 ORTHO05D005670 8.4e-184 647.5 424 70.0
FAN18G4375 Fragaria x ananassa HOM05D004439 ORTHO05D005670 1.9e-183 646.4 474 65.2
FAN13G1146 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.4e-183 646.0 445 67.6
AUR62019828 Chenopodium quinoa HOM05D004439 ORTHO05D005670 1.2e-182 643.7 455 66.6
FAN04G2433 Fragaria x ananassa HOM05D004439 ORTHO05D005670 2.7e-182 642.5 465 65.2
DCAR_006321 Daucus carota HOM05D004439 ORTHO05D005670 3.5e-182 642.1 452 65.7
FAN08G0613 Fragaria x ananassa HOM05D004439 ORTHO05D005670 4.6e-182 641.7 466 65.5
Aqoxy5G04196 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 1.8e-181 639.8 448 67.9
Ca_15083_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 3.0e-181 639.0 427 69.3
Psat5g147560 Pisum sativum HOM05D004439 ORTHO05D005670 3.0e-181 639.0 427 68.9
FAN18G2355 Fragaria x ananassa HOM05D004439 ORTHO05D005670 5.1e-181 638.3 475 64.6
arahy.Tifrunner.gnm1.ann1.FA9VAL Arachis hypogaea HOM05D004439 ORTHO05D005670 5.6e-180 634.8 448 66.3
arahy.Tifrunner.gnm1.ann1.X9M6Z3 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.3e-179 633.6 448 66.1
arahy.Tifrunner.gnm1.ann1.URL0E3 Arachis hypogaea HOM05D004439 ORTHO05D005670 2.8e-179 632.5 448 65.8
Medtr3g062490 Medicago truncatula HOM05D004439 ORTHO05D005670 6.2e-179 631.3 427 68.1
Cpa.g.sc79.44 Carica papaya HOM05D004439 ORTHO05D005670 8.1e-179 630.9 427 68.4
Ca_15072_v3 Cicer arietinum L. HOM05D004439 ORTHO05D005670 1.1e-178 630.6 453 66.0
Rhsim07G0082800 Rhododendron simsii HOM05D004439 ORTHO05D005670 3.1e-178 629.0 425 67.1
AUR62010830 Chenopodium quinoa HOM05D004439 ORTHO05D005670 5.3e-178 628.2 452 65.9
ECA233G4302 Erigeron canadensis HOM05D004439 ORTHO05D005670 9.0e-178 627.5 441 67.6
HanXRQChr05g0138501 Helianthus annuus HOM05D004439 ORTHO05D005670 3.8e-176 622.1 445 66.3
HanXRQChr06g0184201 Helianthus annuus HOM05D004439 ORTHO05D005670 1.1e-175 620.5 451 65.4
Actinidia27332 Actinidia chinensis HOM05D004439 ORTHO05D005670 1.2e-174 617.1 452 65.3
Lj8C209T4 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-174 617.1 386 71.5
arahy.Tifrunner.gnm1.ann1.B833UN Arachis hypogaea HOM05D004439 ORTHO05D005670 2.1e-174 616.3 463 63.3
Oeu063530.1 Olea europaea HOM05D004439 ORTHO05D005670 5.1e-173 611.7 383 74.7
Ah.12g052480 Amaranthus hybridus HOM05D004439 ORTHO05D005670 6.7e-173 611.3 459 64.3
THA.LOC104809335 Tarenaya hassleriana HOM05D004439 ORTHO05D005670 8.7e-173 610.9 447 64.0
HPP92_001766 Vanilla planifolia HOM05D004439 ORTHO05D005670 8.7e-173 610.9 499 59.7
Carub.0007s3348 Capsella rubella HOM05D004439 ORTHO05D005670 1.9e-172 609.8 447 62.9
AT5G41880 Arabidopsis thaliana HOM05D004439 ORTHO05D005670 5.7e-172 608.2 454 63.0
Aqoxy1G01152 Aquilegia oxysepala HOM05D004439 ORTHO05D005670 8.2e-171 604.4 409 68.9
CDE02G4298 Ceratophyllum demersum HOM05D004439 ORTHO05D005670 1.8e-170 603.2 465 61.9
AL7G47340 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 6.9e-170 601.3 428 64.5
A04p15000 Brassica napus HOM05D004439 ORTHO05D005670 9.0e-170 600.9 433 64.2
Sp7g00230 Schrenkiella parvula HOM05D004439 ORTHO05D005670 9.0e-170 600.9 430 64.7
BraA04t17145Z Brassica rapa HOM05D004439 ORTHO05D005670 1.5e-169 600.1 433 64.0
CARHR212680 Cardamine hirsuta HOM05D004439 ORTHO05D005670 1.5e-169 600.1 449 62.6
Thhalv10027750m.g Eutrema salsugineum HOM05D004439 ORTHO05D005670 2.6e-169 599.4 454 62.8
BcaC02g08908 Brassica carinata HOM05D004439 ORTHO05D005670 5.9e-169 598.2 431 63.3
HPP92_001588 Vanilla planifolia HOM05D004439 ORTHO05D005670 1.3e-168 597.0 445 63.1
C04p49290 Brassica napus HOM05D004439 ORTHO05D005670 5.0e-168 595.1 433 63.3
BolC4t26514H Brassica oleracea HOM05D004439 ORTHO05D005670 5.0e-168 595.1 433 63.3
BcaB02g07872 Brassica carinata HOM05D004439 ORTHO05D005670 1.9e-167 593.2 432 63.4
PSO339G0633 Papaver somniferum HOM05D004439 ORTHO05D005670 6.1e-166 588.2 456 63.6
Sabra03G0071700 Salix brachista HOM05D004439 ORTHO05D005670 1.0e-165 587.4 481 60.1
PSO384G1647 Papaver somniferum HOM05D004439 ORTHO05D005670 1.8e-165 586.6 451 63.2
C06p20300 Brassica napus HOM05D004439 ORTHO05D005670 4.8e-163 578.6 444 61.0
BcaB06g27677 Brassica carinata HOM05D004439 ORTHO05D005670 8.2e-163 577.8 456 59.6
Mapoly0061s0010 Marchantia polymorpha HOM05D004439 ORTHO05D005670 1.8e-162 576.6 455 59.3
Gohir.A12G236000 Gossypium hirsutum HOM05D004439 ORTHO05D005670 3.1e-162 575.9 343 75.2
Lj8A194T41 Lonicera japonica HOM05D004439 ORTHO05D005670 2.2e-160 569.7 378 68.5
Nitab4.5_0008661g0010 Nicotiana tabacum HOM05D004439 ORTHO05D005670 1.5e-153 547.0 396 64.6
Pp3c9_1070 Physcomitrium patens HOM05D004439 ORTHO05D005670 2.0e-153 546.6 441 56.5
Aa31LG9G280 Aethionema arabicum HOM05D004439 ORTHO05D005670 4.2e-151 538.9 420 61.7
BcaC08g44563 Brassica carinata HOM05D004439 ORTHO05D005670 3.6e-150 535.8 404 61.9
DCAR_029884 Daucus carota HOM05D004439 ORTHO05D005670 3.6e-150 535.8 381 66.1
ClCG08G001530 Citrullus lanatus HOM05D004439 ORTHO05D005670 6.1e-150 535.0 555 51.2
A07p20990 Brassica napus HOM05D004439 ORTHO05D005670 3.0e-149 532.7 461 56.2
CBR_g30932 Chara braunii HOM05D004439 ORTHO05D005670 1.1e-148 530.8 449 54.6
CBR_g51004 Chara braunii HOM05D004439 ORTHO05D005670 2.2e-147 526.6 433 55.0
Rhsim09G0008900 Rhododendron simsii HOM05D004439 ORTHO05D005670 1.8e-146 523.5 468 55.6
AagrBONN_evm.TU.Sc2ySwM_117.2781 Anthoceros agrestis HOM05D004439 ORTHO05D005670 7.2e-143 511.5 461 52.7
Haze_08623 Corylus avellana HOM05D004439 ORTHO05D005670 1.2e-142 510.8 327 69.7
arahy.Tifrunner.gnm1.ann1.4X43I0 Arachis hypogaea HOM05D004439 ORTHO05D005670 1.8e-133 480.3 340 65.6
BcaNung06856 Brassica carinata HOM05D004439 ORTHO05D005670 5.0e-128 462.2 465 52.0
TPR.G13893 Trifolium pratense HOM05D004439 ORTHO05D005670 5.7e-124 448.7 424 53.5
SHI03128 Sapria himalayana HOM05D004439 ORTHO05D005670 1.9e-119 433.7 466 48.3
Glyma.14G028200 Glycine max HOM05D004439 ORTHO05D005670 5.7e-116 422.2 291 68.4
SMO361G0219 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 7.8e-113 411.8 347 55.0
SMO361G0316 Selaginella moellendorffii HOM05D004439 ORTHO05D005670 1.1e-111 407.9 347 55.6
Zm00001eb346380 Zea mays HOM05D004439 ORTHO05D005670 1.1e-111 407.9 291 65.3
MD14G1127500 Malus domestica HOM05D004439 ORTHO05D005670 3.1e-109 399.8 273 69.2
Lj2A169G40 Lonicera japonica HOM05D004439 ORTHO05D005670 1.2e-108 397.9 329 59.0
Cre07.g312350 Chlamydomonas reinhardtii HOM05D004439 ORTHO05D005670 1.5e-103 380.9 401 45.4
CSS0041217 Camellia sinensis var. sinensis HOM05D004439 ORTHO05D005670 9.5e-103 378.3 453 48.1
arahy.Tifrunner.gnm1.ann1.JNH9P6 Arachis hypogaea HOM05D004439 ORTHO05D005670 5.8e-100 369.0 413 48.7
Cfa025390 Carpinus fangiana HOM05D004439 ORTHO05D005670 1.5e-92 344.4 438 41.8
RcHm_v2.0_Chr6g0245381 Rosa chinensis HOM05D004439 ORTHO05D005670 3.2e-90 336.7 208 73.6
PRCOL_00003494 Prasinoderma coloniale HOM05D004439 ORTHO05D005670 3.3e-87 326.6 418 40.9
RcHm_v2.0_Chr6g0245391 Rosa chinensis HOM05D004439 ORTHO05D005670 4.2e-74 283.1 222 61.3
RcHm_v2.0_Chr5g0068871 Rosa chinensis HOM05D004439 ORTHO05D005670 7.9e-73 278.9 277 52.7
TPR.G191 Trifolium pratense HOM05D004439 ORTHO05D005670 1.4e-66 258.1 179 66.5
SEGI_14966 Sequoiadendron giganteum HOM05D004439 ORTHO05D005670 9.0e-53 212.2 195 53.3
PSO063G0793 Papaver somniferum HOM05D004439 ORTHO05D005670 2.6e-52 210.7 182 58.8
MELO3C027184.2 Cucumis melo HOM05D004439 ORTHO05D005670 5.5e-50 203.0 119 73.9
TPR.G9934 Trifolium pratense HOM05D004439 ORTHO05D005670 6.3e-46 189.5 221 47.1
MELO3C031246.2 Cucumis melo HOM05D004439 ORTHO05D005670 3.6e-41 173.7 155 54.8
PGSC0003DMG400012290 Solanum tuberosum HOM05D004439 ORTHO05D005670 6.7e-40 169.5 231 40.7
AL3G52130 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.1e-37 162.2 250 40.4
AL1G55640 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 2.4e-37 161.0 239 40.6
Os05g0358200 Oryza sativa ssp. japonica HOM05D004439 ORTHO05D005670 3.4e-36 157.1 106 67.0
TPR.G9939 Trifolium pratense HOM05D004439 ORTHO05D005670 3.6e-33 147.1 196 43.4
MD14G1127600 Malus domestica HOM05D004439 ORTHO05D005670 1.7e-30 138.3 110 59.1
TPR.G3794 Trifolium pratense HOM05D004439 ORTHO05D005670 1.4e-29 135.2 94 64.9
AL2G23180 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 3.6e-25 120.6 239 34.3
AL1G44430 Arabidopsis lyrata HOM05D004439 ORTHO05D005670 1.2e-20 105.5 84 57.1
MD06G1072700 Malus domestica HOM05D004439 ORTHO05D005670 2.7e-20 104.4 62 72.6
Lj2A169G39 Lonicera japonica HOM05D004439 ORTHO05D005670 3.8e-19 100.5 71 62.0
SEGI_35904 Sequoiadendron giganteum HOM05D004439 ORTHO05D000007 1.0e-16 92.4 131 37.4
TPR.G22107 Trifolium pratense HOM05D004439 ORTHO05D005670 6.3e-14 83.2 68 54.4
Actinidia27323 Actinidia chinensis HOM05D004439 ORTHO05D005670 5.4e-13 80.1 79 51.9
Actinidia22721 Actinidia chinensis HOM05D004439 ORTHO05D057326 5.2e-08 63.5 62 56.5
Actinidia27324 Actinidia chinensis HOM05D004439 ORTHO05D005670 4.4e-07 60.5 33 75.8
Ah.02g112160 Amaranthus hybridus HOM05D015883 ORTHO05D005553 2.2e-06 58.2 39 69.2


User provided reference genes

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