Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_90.g27573 Utricularia gibba HOM05D004766 ORTHO05D006159 0.0e+00 1243.0 614 100.0
MSTRG.178 Avicennia marina HOM05D004766 ORTHO05D006159 5.1e-191 671.8 623 55.9
Migut.F01258 Erythranthe guttata HOM05D004766 ORTHO05D006159 1.2e-189 667.2 619 55.9
SGA_v2.0_scaffold275G46605 Striga asiatica HOM05D004766 ORTHO05D006159 3.6e-181 639.0 632 53.8
SalBow5G3937 Salvia bowleyana HOM05D004766 ORTHO05D006159 2.1e-176 623.2 654 51.2
Oeu054426.2 Olea europaea HOM05D004766 ORTHO05D006159 6.9e-172 608.2 698 48.0
Dinv26060 Davidia involucrata HOM05D004766 ORTHO05D006159 8.4e-170 601.3 627 51.7
Dinv21831 Davidia involucrata HOM05D004766 ORTHO05D006159 5.5e-169 598.6 626 51.1
CiPaw.01G306100 Carya illinoinensis HOM05D004766 ORTHO05D006159 9.3e-169 597.8 622 51.4
Cc02_g05520 Coffea canephora HOM05D004766 ORTHO05D006159 9.3e-169 597.8 625 51.4
GSVIVG01032703001 Vitis vinifera HOM05D004766 ORTHO05D006159 2.7e-168 596.3 618 51.9
Nn2g10346 Nelumbo nucifera HOM05D004766 ORTHO05D006159 5.1e-167 592.0 618 49.2
Haze_17351 Corylus avellana HOM05D004766 ORTHO05D006159 6.7e-167 591.7 647 49.6
Potri.019G056200 Populus trichocarpa HOM05D004766 ORTHO05D006159 9.6e-166 587.8 619 50.2
Sabra19G0071700 Salix brachista HOM05D004766 ORTHO05D006159 2.1e-165 586.6 619 50.6
QL08p064773 Quercus lobata HOM05D004766 ORTHO05D006159 3.7e-165 585.9 629 49.6
Actinidia29749 Actinidia chinensis HOM05D004766 ORTHO05D006159 6.2e-165 585.1 619 49.6
Ciclev10033572m.g Citrus clementina HOM05D004766 ORTHO05D006159 2.4e-164 583.2 624 50.5
Nitab4.5_0003695g0010 Nicotiana tabacum HOM05D004766 ORTHO05D006159 2.4e-164 583.2 629 49.8
Rhsim09G0184400 Rhododendron simsii HOM05D004766 ORTHO05D006159 4.0e-164 582.4 622 49.8
CAN.G169.5 Capsicum annuum HOM05D004766 ORTHO05D006159 5.3e-164 582.0 626 49.0
PGSC0003DMG400024309 Solanum tuberosum HOM05D004766 ORTHO05D006159 9.0e-164 581.3 623 50.1
Manes.07G137600 Manihot esculenta HOM05D004766 ORTHO05D006159 2.6e-163 579.7 622 49.5
Nn5g26881 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.5e-163 578.9 625 50.6
CSS0019433 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 1.0e-162 577.8 697 46.6
vmacro09973 Vaccinium macrocarpon HOM05D004766 ORTHO05D006159 1.7e-162 577.0 652 47.9
TWI09G0270 Tripterygium wilfordii HOM05D004766 ORTHO05D006159 2.9e-162 576.2 621 49.3
ECA233G3027 Erigeron canadensis HOM05D004766 ORTHO05D006159 1.1e-161 574.3 618 49.5
Lj8C56T7 Lonicera japonica HOM05D004766 ORTHO05D006159 2.5e-161 573.2 623 50.6
TAR633G2654 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.5e-161 573.2 622 49.4
MELO3C020001.2 Cucumis melo HOM05D004766 ORTHO05D006159 3.2e-161 572.8 625 48.2
Glyma.04G222000 Glycine max HOM05D004766 ORTHO05D006159 3.2e-161 572.8 621 49.9
Glyma.06G143400 Glycine max HOM05D004766 ORTHO05D006159 3.2e-161 572.8 621 50.1
Nitab4.5_0000109g0520 Nicotiana tabacum HOM05D004766 ORTHO05D006159 5.5e-161 572.0 623 49.4
Lalb_Chr11g0067831 Lupinus albus HOM05D004766 ORTHO05D006159 9.3e-161 571.2 631 49.8
Prupe.2G263500 Prunus persica HOM05D004766 ORTHO05D006159 9.3e-161 571.2 621 49.6
HanXRQChr08g0222571 Helianthus annuus HOM05D004766 ORTHO05D006159 2.1e-160 570.1 614 49.5
arahy.Tifrunner.gnm1.ann1.4BS23W Arachis hypogaea HOM05D004766 ORTHO05D006159 2.7e-160 569.7 619 49.3
MD07G1233000 Malus domestica HOM05D004766 ORTHO05D006159 3.5e-160 569.3 616 49.0
arahy.Tifrunner.gnm1.ann1.GHXG56 Arachis hypogaea HOM05D004766 ORTHO05D006159 6.1e-160 568.5 619 49.3
Ca_16870_v3 Cicer arietinum L. HOM05D004766 ORTHO05D006159 3.0e-159 566.2 625 48.8
MBI15_g35105_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D006159 3.9e-159 565.8 624 48.2
Ah.16g104280 Amaranthus hybridus HOM05D004766 ORTHO05D006159 5.1e-159 565.5 619 49.3
Duzib128G1614 Durio zibethinus HOM05D004766 ORTHO05D006159 6.7e-159 565.1 627 48.2
CsaV3_6G002240 Cucumis sativus L. HOM05D004766 ORTHO05D006159 1.5e-158 563.9 621 47.3
HanXRQChr17g0560771 Helianthus annuus HOM05D004766 ORTHO05D006159 1.5e-158 563.9 616 48.4
Phvul.009G142700 Phaseolus vulgaris HOM05D004766 ORTHO05D006159 9.7e-158 561.2 625 48.6
Aqoxy4G02363 Aquilegia oxysepala HOM05D004766 ORTHO05D006159 1.6e-157 560.5 620 49.4
Lsat_1_v5_gn_8_13521 Lactuca sativa HOM05D004766 ORTHO05D006159 2.2e-157 560.1 613 49.1
PGR142G0390 Punica granatum HOM05D004766 ORTHO05D006159 2.8e-157 559.7 620 48.5
DCAR_010519 Daucus carota HOM05D004766 ORTHO05D006159 6.3e-157 558.5 620 48.5
EL10Ac2g04254 Beta vulgaris HOM05D004766 ORTHO05D006159 1.1e-156 557.8 620 48.9
RcHm_v2.0_Chr1g0372121 Rosa chinensis HOM05D004766 ORTHO05D006159 1.4e-156 557.4 617 48.3
Atru.chr12.159 Acer truncatum HOM05D004766 ORTHO05D006159 6.9e-156 555.1 624 46.6
Sed0017451 Sechium edule HOM05D004766 ORTHO05D006159 6.9e-156 555.1 618 47.7
Thecc.10G183900 Theobroma cacao HOM05D004766 ORTHO05D006159 1.2e-155 554.3 624 48.6
CANSAT56G1075 Cannabis sativa HOM05D004766 ORTHO05D006159 4.5e-155 552.4 621 48.5
FvH4_7g25850 Fragaria vesca HOM05D004766 ORTHO05D006159 7.7e-155 551.6 617 48.3
Lalb_Chr08g0239111 Lupinus albus HOM05D004766 ORTHO05D006159 7.7e-155 551.6 628 48.7
Actinidia31615 Actinidia chinensis HOM05D004766 ORTHO05D006159 1.3e-154 550.8 620 47.7
Gohir.A13G007600 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.7e-154 550.4 628 47.8
FAN06G4224 Fragaria x ananassa HOM05D004766 ORTHO05D006159 2.2e-154 550.1 617 48.1
Gorai.013G008100 Gossypium raimondii HOM05D004766 ORTHO05D006159 8.5e-154 548.1 624 47.1
Eucgr.J00130 Eucalyptus grandis HOM05D004766 ORTHO05D006159 1.1e-153 547.7 620 48.1
FAN10G2197 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.9e-153 547.0 617 47.8
Gohir.D13G007700 Gossypium hirsutum HOM05D004766 ORTHO05D006159 1.9e-153 547.0 624 47.1
FAN03G3241 Fragaria x ananassa HOM05D004766 ORTHO05D006159 5.5e-153 545.4 617 47.2
VMungo1309G2839 Vigna mungo HOM05D004766 ORTHO05D006159 7.2e-153 545.0 628 47.8
Cpa.g.sc19.83 Carica papaya HOM05D004766 ORTHO05D006159 2.7e-152 543.1 624 47.3
Hund13464 Selenicereus undatus HOM05D004766 ORTHO05D006159 4.3e-150 535.8 621 47.3
PSO384G4442 Papaver somniferum HOM05D004766 ORTHO05D006159 5.7e-150 535.4 635 45.7
Medtr3g094070 Medicago truncatula HOM05D004766 ORTHO05D006159 7.4e-150 535.0 627 47.7
PSO339G1431 Papaver somniferum HOM05D004766 ORTHO05D006159 4.5e-147 525.8 633 45.8
Psat5g069120 Pisum sativum HOM05D004766 ORTHO05D006159 4.5e-147 525.8 629 45.3
THA.LOC104812375 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 7.7e-147 525.0 621 44.9
TPR.G16138 Trifolium pratense HOM05D004766 ORTHO05D006159 1.0e-146 524.6 648 45.2
ClCG11G005730 Citrullus lanatus HOM05D004766 ORTHO05D006159 3.8e-146 522.7 591 47.5
Thhalv10016414m.g Eutrema salsugineum HOM05D004766 ORTHO05D006159 2.5e-145 520.0 623 45.1
AUR62031489 Chenopodium quinoa HOM05D004766 ORTHO05D006159 2.1e-144 516.9 622 47.6
Hma1.2p1_2838F.1_g329290 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 3.6e-144 516.2 556 49.5
Aa31LG10G11180 Aethionema arabicum HOM05D004766 ORTHO05D006159 7.9e-144 515.0 620 45.5
THA.LOC104803295 Tarenaya hassleriana HOM05D004766 ORTHO05D006159 2.3e-143 513.5 616 44.5
AL4G38400 Arabidopsis lyrata HOM05D004766 ORTHO05D006159 6.7e-143 511.9 617 44.9
CARHR135660 Cardamine hirsuta HOM05D004766 ORTHO05D006159 6.7e-143 511.9 621 44.8
BcaC02g07319 Brassica carinata HOM05D004766 ORTHO05D006159 1.1e-142 511.1 623 45.1
Sp4g22880 Schrenkiella parvula HOM05D004766 ORTHO05D006159 9.7e-142 508.1 621 44.8
SpUn0061_0030 Schrenkiella parvula HOM05D004766 ORTHO05D006159 9.7e-142 508.1 621 44.8
AT2G40550 Arabidopsis thaliana HOM05D004766 ORTHO05D006159 1.3e-141 507.7 621 44.6
BcaB06g29150 Brassica carinata HOM05D004766 ORTHO05D006159 1.7e-141 507.3 624 44.9
Sc10g0002920 Simmondsia chinensis HOM05D004766 ORTHO05D006159 8.2e-141 505.0 595 47.4
Carub.0004s2277 Capsella rubella HOM05D004766 ORTHO05D006159 1.4e-140 504.2 619 44.7
ATR0681G084 Amborella trichopoda HOM05D004766 ORTHO05D006159 1.2e-139 501.1 625 44.0
AUR62012360 Chenopodium quinoa HOM05D004766 ORTHO05D006159 7.7e-139 498.4 624 45.8
A04p31000 Brassica napus HOM05D004766 ORTHO05D006159 1.3e-138 497.7 626 43.6
Cfa001212 Carpinus fangiana HOM05D004766 ORTHO05D006159 1.3e-138 497.7 508 51.4
C04p68390 Brassica napus HOM05D004766 ORTHO05D006159 2.5e-137 493.4 621 44.8
Os01g0166800 Oryza sativa ssp. japonica HOM05D004766 ORTHO05D006159 1.7e-133 480.7 625 41.3
Lj1g0018162 Lotus japonicus HOM05D004766 ORTHO05D006159 4.8e-133 479.2 624 42.8
CDE12G0671 Ceratophyllum demersum HOM05D004766 ORTHO05D006159 9.1e-132 474.9 611 43.5
Actinidia33880 Actinidia chinensis HOM05D004766 ORTHO05D006159 5.9e-131 472.2 604 44.0
Zm00001eb123270 Zea mays HOM05D004766 ORTHO05D006159 1.1e-129 468.0 634 41.6
FAN01G2723 Fragaria x ananassa HOM05D004766 ORTHO05D006159 1.5e-126 457.6 580 44.0
HPP92_018094 Vanilla planifolia HOM05D004766 ORTHO05D006159 3.4e-126 456.4 626 42.8
BraA04t18557Z Brassica rapa HOM05D000154 ORTHO05D000092 1.4e-124 451.1 535 45.6
BolC4t28340H Brassica oleracea HOM05D000154 ORTHO05D000092 1.6e-123 447.6 529 46.7
Sopen06g015640 Solanum pennellii HOM05D000002 ORTHO05D000001 5.2e-119 432.6 544 45.6
SEGI_19414 Sequoiadendron giganteum HOM05D004766 ORTHO05D006159 3.1e-116 423.3 625 39.7
Hma1.2p1_2838F.1_g329300 Hydrangea macrophylla HOM05D004766 ORTHO05D006159 5.4e-116 422.5 413 54.7
C04p02090 Brassica napus HOM05D004766 ORTHO05D006159 2.3e-111 407.1 554 42.4
MD01G1166300 Malus domestica HOM05D004766 ORTHO05D006159 7.5e-110 402.1 457 49.5
Pp3c21_8640 Physcomitrium patens HOM05D004766 ORTHO05D006159 2.1e-104 384.0 634 35.6
COL.COLO4_19454 Corchorus olitorius HOM05D004766 ORTHO05D006159 3.1e-103 380.2 477 45.1
SMO347G0133 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 5.2e-103 379.4 617 36.5
AagrBONN_evm.TU.Sc2ySwM_228.256 Anthoceros agrestis HOM05D004766 ORTHO05D006159 9.8e-102 375.2 600 37.7
SMO347G0333 Selaginella moellendorffii HOM05D004766 ORTHO05D006159 1.2e-94 351.7 613 35.9
TAR636G0335 Trochodendron aralioides HOM05D004766 ORTHO05D006159 1.7e-93 347.8 279 62.4
SHI28878 Sapria himalayana HOM05D004766 ORTHO05D006159 1.0e-90 338.6 371 48.8
Mapoly0030s0020 Marchantia polymorpha HOM05D004766 ORTHO05D006159 3.0e-90 337.0 634 33.8
Peaxi162Scf00739g00014 Petunia axillaris HOM05D004766 ORTHO05D006159 7.3e-81 305.8 251 60.6
MD01G1183300 Malus domestica HOM05D004766 ORTHO05D006159 8.7e-74 282.3 385 43.6
CBR_g29836 Chara braunii HOM05D004766 ORTHO05D006159 6.2e-72 276.2 646 31.7
MCO09G187 Micromonas commoda HOM05D004766 ORTHO05D006159 9.0e-71 272.3 640 31.7
TAR636G1150 Trochodendron aralioides HOM05D004766 ORTHO05D006159 2.6e-62 244.2 331 40.5
Solyc06g050200.2 Solanum lycopersicum HOM05D004766 ORTHO05D006159 3.2e-60 237.3 251 51.4
Dinv21784 Davidia involucrata HOM05D004766 ORTHO05D006159 2.1e-59 234.6 288 45.1
BcaC02g12723 Brassica carinata HOM05D000154 ORTHO05D000092 7.6e-54 216.1 474 33.1
SalBow5G1700 Salvia bowleyana HOM05D004766 ORTHO05D006159 1.3e-50 205.3 397 36.3
Peaxi162Scf00739g00019 Petunia axillaris HOM05D004766 ORTHO05D006159 1.3e-45 188.7 211 45.5
BcaC02g12598 Brassica carinata HOM05D004766 ORTHO05D006159 2.5e-41 174.5 166 55.4
PRCOL_00003324 Prasinoderma coloniale HOM05D004766 ORTHO05D006159 1.6e-40 171.8 569 28.1
CSS0047727 Camellia sinensis var. sinensis HOM05D004766 ORTHO05D006159 5.3e-39 166.8 287 36.6
MD01G1166000 Malus domestica HOM05D004766 ORTHO05D006159 4.5e-38 163.7 153 49.0
Solyc06g050180.3 Solanum lycopersicum HOM05D004766 ORTHO05D006159 4.3e-33 147.1 207 40.1
BolC4t21721H Brassica oleracea HOM05D004766 ORTHO05D006159 1.3e-29 135.6 135 54.1
HanXRQChr02g0033011 Helianthus annuus HOM05D004766 ORTHO05D006159 2.9e-29 134.4 172 41.9
A05p01790 Brassica napus HOM05D004766 ORTHO05D006159 1.4e-28 132.1 127 53.5
BraA05t19176Z Brassica rapa HOM05D004766 ORTHO05D006159 4.5e-22 110.5 115 49.6
SHI28879 Sapria himalayana HOM05D004766 ORTHO05D006159 1.1e-20 105.9 142 43.0
AagrBONN_evm.TU.Sc2ySwM_228.73 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.6e-19 102.1 156 37.2
BolC4t21857H Brassica oleracea HOM05D000154 ORTHO05D000092 2.3e-18 98.2 98 57.1
HanXRQChr03g0064211 Helianthus annuus HOM05D004766 ORTHO05D006159 2.0e-17 95.1 116 43.1
Nn1g07504 Nelumbo nucifera HOM05D004766 ORTHO05D006159 4.5e-14 84.0 76 52.6
MBI11_g31297_MAGBIO Magnolia biondii HOM05D004766 ORTHO05D000022 7.7e-14 83.2 111 39.6
Cre01.g030150 Chlamydomonas reinhardtii HOM05D004766 ORTHO05D006159 1.0e-13 82.8 207 29.0
BcaC04g23924 Brassica carinata HOM05D004766 ORTHO05D039973 1.8e-10 72.0 47 66.0
A06p41130 Brassica napus HOM05D000061 ORTHO05D000050 1.8e-10 72.0 47 66.0
BraA06t27036Z Brassica rapa HOM05D000061 ORTHO05D000050 3.4e-09 67.8 41 68.3
BolC1t04291H Brassica oleracea HOM05D004766 ORTHO05D008768 5.7e-09 67.0 41 68.3
C07p45160 Brassica napus HOM05D004766 ORTHO05D033383 1.7e-08 65.5 49 61.2
C09p32190 Brassica napus HOM05D004766 ORTHO05D008768 1.7e-08 65.5 49 61.2
Peaxi162Scf00041g01211 Petunia axillaris HOM05D004766 ORTHO05D006159 7.0e-07 60.1 57 47.4
HanXRQChr15g0483741 Helianthus annuus HOM05D004766 ORTHO05D006159 9.1e-07 59.7 62 46.8
AagrBONN_evm.TU.Sc2ySwM_336.9 Anthoceros agrestis HOM05D004766 ORTHO05D006159 1.2e-06 59.3 111 35.1
SHI28880 Sapria himalayana HOM05D004766 ORTHO05D006159 2.7e-06 58.2 57 47.4


User provided reference genes

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