Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.3e-145 520.0 317 100.0
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 7.2e-40 168.7 297 44.4
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 4.7e-39 166.0 267 46.1
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 6.1e-39 165.6 281 45.9
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 1.5e-37 161.0 289 43.6
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 2.6e-37 160.2 283 42.4
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 4.4e-37 159.5 281 44.5
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 4.4e-37 159.5 284 42.3
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 2.8e-36 156.8 292 42.5
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 1.1e-35 154.8 273 44.0
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 2.4e-35 153.7 297 40.1
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 7.0e-35 152.1 299 41.1
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 9.1e-35 151.8 266 45.1
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 9.1e-35 151.8 276 41.7
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 1.6e-34 151.0 273 42.5
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.6e-34 151.0 269 43.9
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.6e-34 151.0 269 43.9
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.6e-34 151.0 301 41.2
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.5e-34 149.8 274 43.8
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 3.5e-34 149.8 279 42.7
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 4.5e-34 149.4 308 42.5
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 7.7e-34 148.7 282 40.8
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 1.3e-33 147.9 276 43.1
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 1.3e-33 147.9 276 42.4
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 1.7e-33 147.5 302 41.1
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 1.7e-33 147.5 296 41.6
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 2.9e-33 146.7 302 40.1
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 8.5e-33 145.2 278 43.2
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 8.5e-33 145.2 302 40.7
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 8.5e-33 145.2 282 44.7
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 2.5e-32 143.7 295 41.4
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 3.2e-32 143.3 284 40.8
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 4.2e-32 142.9 270 41.1
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 5.5e-32 142.5 282 40.4
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 9.4e-32 141.7 268 41.0
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 1.6e-31 141.0 291 40.2
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 2.1e-31 140.6 272 41.5
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 2.1e-31 140.6 292 40.8
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 2.7e-31 140.2 289 40.5
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.6e-31 139.8 290 41.0
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.3e-30 137.1 269 42.0
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 3.0e-30 136.7 292 38.0
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 4.0e-30 136.3 251 40.2
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 4.0e-30 136.3 291 39.5
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 5.2e-30 136.0 294 40.8
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 5.2e-30 136.0 266 43.2
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 6.8e-30 135.6 261 42.1
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 1.5e-29 134.4 276 39.9
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 1.5e-29 134.4 285 41.1
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 2.0e-29 134.0 277 41.5
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 1.3e-28 131.3 269 40.5
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.2e-28 130.6 269 40.5
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 4.8e-28 129.4 269 39.0
unitig_744.g24589 Utricularia gibba HOM05D004504 ORTHO05D005324 4.8e-28 129.4 253 40.3
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 6.3e-28 129.0 262 39.7
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 6.3e-28 129.0 294 38.8
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 8.3e-28 128.6 290 39.3
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.1e-27 128.3 270 39.6
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 1.1e-27 128.3 261 40.2
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 1.8e-27 127.5 303 38.6
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.8e-27 127.5 280 40.0
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 2.4e-27 127.1 278 40.3
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 2.4e-27 127.1 282 39.4
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 2.4e-27 127.1 280 39.6
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 2.4e-27 127.1 288 38.5
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.1e-27 126.7 291 39.2
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 4.1e-27 126.3 291 38.1
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.1e-27 126.3 291 38.1
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 9.1e-27 125.2 294 39.1
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 2.7e-26 123.6 295 35.9
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 2.7e-26 123.6 279 35.8
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 4.5e-26 122.9 297 35.0
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 5.9e-26 122.5 288 38.5
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 1.0e-25 121.7 305 37.7
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 1.7e-25 120.9 287 36.9
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 2.9e-25 120.2 312 37.5
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 3.8e-25 119.8 244 38.9
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 5.0e-25 119.4 282 39.0
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 8.6e-25 118.6 280 38.9
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.1e-24 118.2 259 39.0
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.5e-24 117.9 270 38.9
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 1.5e-24 117.9 295 38.0
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.9e-24 117.5 287 38.0
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 1.9e-24 117.5 285 38.6
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 2.5e-24 117.1 315 35.6
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 4.2e-24 116.3 280 35.4
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 5.5e-24 115.9 291 34.7
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 7.2e-24 115.5 326 35.3
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 1.2e-23 114.8 293 35.5
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 1.2e-23 114.8 273 37.0
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 2.1e-23 114.0 238 37.4
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 4.7e-23 112.8 272 37.5
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 4.7e-23 112.8 302 35.4
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 8.0e-23 112.1 237 40.5
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 8.0e-23 112.1 321 34.9
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 8.0e-23 112.1 279 36.2
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 1.4e-22 111.3 307 35.2
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 1.8e-22 110.9 280 37.9
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 1.8e-22 110.9 266 38.0
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 2.3e-22 110.5 313 39.9
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 4.0e-22 109.8 280 38.6
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 6.8e-22 109.0 279 37.3
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.2e-21 108.2 272 37.1
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 1.5e-21 107.8 280 35.0
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 1.5e-21 107.8 287 35.9
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 2.6e-21 107.1 310 33.9
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 7.5e-21 105.5 255 36.5
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 1.7e-20 104.4 203 42.9
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 4.9e-20 102.8 311 31.5
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 6.3e-20 102.4 319 32.0
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 8.3e-20 102.1 316 34.5
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 2.7e-18 97.1 290 35.2
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 3.5e-18 96.7 315 32.1
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 3.5e-18 96.7 315 32.1
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 4.5e-18 96.3 357 31.7
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 5.9e-18 95.9 293 33.8
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 7.8e-18 95.5 284 34.5
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.0e-17 95.1 279 34.8
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.3e-17 94.7 288 35.8
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 1.7e-17 94.4 273 34.1
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 3.8e-17 93.2 315 32.1
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 3.8e-17 93.2 315 32.1
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 3.8e-17 93.2 315 32.1
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 6.6e-17 92.4 314 32.5
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 1.1e-16 91.7 285 32.3
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 1.1e-16 91.7 266 35.0
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 1.9e-16 90.9 284 31.7
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.5e-16 90.5 251 33.5
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 2.5e-16 90.5 251 33.5
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.5e-16 90.5 289 31.5
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 5.6e-16 89.4 283 34.6
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 9.5e-16 88.6 313 31.3
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 9.5e-16 88.6 136 47.1
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.6e-15 87.8 237 33.8
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 2.1e-15 87.4 264 34.1
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 3.6e-15 86.7 229 35.8
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 8.0e-15 85.5 228 34.6
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 1.4e-14 84.7 265 32.5
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.8e-14 84.3 281 31.3
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 2.3e-14 84.0 154 41.6
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 2.3e-14 84.0 267 34.5
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 1.5e-13 81.3 303 32.7
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 9.8e-13 78.6 272 30.9
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 9.8e-13 78.6 269 30.5
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 3.7e-12 76.6 73 60.3
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 8.3e-12 75.5 291 34.0
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 1.8e-11 74.3 74 54.1
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.8e-11 74.3 176 35.8
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 3.2e-11 73.6 175 41.1
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 7.0e-11 72.4 274 29.9
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 9.2e-11 72.0 261 31.8
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 2.0e-10 70.9 66 57.6
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 2.7e-10 70.5 198 36.4
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 3.5e-10 70.1 169 37.9
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 3.9e-09 66.6 89 46.1
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 5.6e-08 62.8 304 26.0
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 5.6e-08 62.8 226 32.3
Solyc09g075750.1 Solanum lycopersicum HOM05D006303 ORTHO05D008007 1.2e-07 61.6 335 27.2
BcaB04g19742 Brassica carinata HOM05D006303 ORTHO05D008007 1.8e-06 57.8 307 28.3
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.8e-06 57.8 62 51.6
Sopen09g030560 Solanum pennellii HOM05D006303 ORTHO05D008007 2.3e-06 57.4 334 26.3
Lj1g0001361 Lotus japonicus HOM05D006303 ORTHO05D008007 3.1e-06 57.0 74 47.3
GSVIVG01017928001 Vitis vinifera HOM05D006303 ORTHO05D008007 5.2e-06 56.2 74 48.6
Nitab4.5_0007531g0010 Nicotiana tabacum HOM05D006303 ORTHO05D008007 6.8e-06 55.8 90 45.6
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 6.8e-06 55.8 71 49.3
Rhsim04G0205200 Rhododendron simsii HOM05D006303 ORTHO05D008007 6.8e-06 55.8 74 47.3
Lsat_1_v5_gn_5_148441 Lactuca sativa HOM05D006303 ORTHO05D008007 8.9e-06 55.5 313 28.1


User provided reference genes

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