Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15433 Utricularia gibba HOM05D004485 ORTHO05D005485 0.0e+00 1256.5 725 100.0
MSTRG.26380 Avicennia marina HOM05D004485 ORTHO05D005485 9.0e-187 657.9 711 59.2
Dinv36695 Davidia involucrata HOM05D004485 ORTHO05D005485 1.6e-183 647.1 705 58.0
Migut.K00530 Erythranthe guttata HOM05D004485 ORTHO05D005485 1.3e-182 644.0 691 59.3
Actinidia09445 Actinidia chinensis HOM05D004485 ORTHO05D005485 6.4e-177 625.2 714 55.7
Atru.chr7.1446 Acer truncatum HOM05D004485 ORTHO05D005485 8.4e-177 624.8 723 55.2
Gohir.D08G263700 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.9e-174 615.9 718 54.3
QL02p042072 Quercus lobata HOM05D004485 ORTHO05D005485 3.9e-174 615.9 709 54.9
Thecc.09G101900 Theobroma cacao HOM05D004485 ORTHO05D005485 3.9e-174 615.9 709 55.3
MD15G1195100 Malus domestica HOM05D004485 ORTHO05D005485 1.1e-173 614.4 718 53.9
MD02G1064300 Malus domestica HOM05D004485 ORTHO05D005485 9.6e-173 611.3 713 54.7
CSS0002032 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.8e-172 609.8 705 55.0
GSVIVG01015314001 Vitis vinifera HOM05D004485 ORTHO05D005485 3.7e-172 609.4 713 54.8
Solyc12g008390.3 Solanum lycopersicum HOM05D004485 ORTHO05D005485 6.2e-172 608.6 731 54.2
Ciclev10007632m.g Citrus clementina HOM05D004485 ORTHO05D005485 4.0e-171 605.9 714 54.9
Prupe.7G221400 Prunus persica HOM05D004485 ORTHO05D005485 1.5e-170 604.0 753 51.5
Sopen12g003350 Solanum pennellii HOM05D004485 ORTHO05D005485 1.5e-170 604.0 729 53.5
CiPaw.03G226100 Carya illinoinensis HOM05D004485 ORTHO05D005485 4.5e-170 602.4 713 54.1
Nn8g39096 Nelumbo nucifera HOM05D004485 ORTHO05D005485 1.3e-169 600.9 723 54.6
Actinidia17528 Actinidia chinensis HOM05D004485 ORTHO05D005485 2.9e-169 599.7 717 53.8
Sabra18G0074900 Salix brachista HOM05D004485 ORTHO05D005485 6.4e-169 598.6 708 55.2
Gohir.A06G066600 Gossypium hirsutum HOM05D004485 ORTHO05D005485 8.4e-169 598.2 710 53.8
Sc08g0007920 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.1e-168 597.8 729 53.4
Potri.018G086600 Populus trichocarpa HOM05D004485 ORTHO05D005485 3.2e-168 596.3 703 55.0
TAR624G1325 Trochodendron aralioides HOM05D004485 ORTHO05D005485 9.3e-168 594.7 711 54.3
Glyma.16G077500 Glycine max HOM05D004485 ORTHO05D005485 1.6e-167 594.0 708 55.1
Duzib168G0844 Durio zibethinus HOM05D004485 ORTHO05D005485 2.7e-167 593.2 708 53.5
Glyma.01G008900 Glycine max HOM05D004485 ORTHO05D005485 2.7e-167 593.2 708 54.2
Oeu053166.1 Olea europaea HOM05D004485 ORTHO05D005485 4.6e-167 592.4 709 56.0
Gorai.004G281700 Gossypium raimondii HOM05D004485 ORTHO05D005485 3.9e-166 589.3 498 67.1
Manes.16G110100 Manihot esculenta HOM05D004485 ORTHO05D005485 3.9e-166 589.3 476 69.7
CANSAT56G2449 Cannabis sativa HOM05D004485 ORTHO05D005485 1.1e-165 587.8 706 53.1
CiPaw.04G158800 Carya illinoinensis HOM05D004485 ORTHO05D005485 1.5e-165 587.4 730 54.0
EL10Ac8g18398 Beta vulgaris HOM05D004485 ORTHO05D005485 3.3e-165 586.3 713 55.0
Gohir.A08G242800 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.3e-165 585.9 720 53.1
Eucgr.C01004 Eucalyptus grandis HOM05D004485 ORTHO05D005485 7.4e-165 585.1 716 53.8
Duzib187G1416 Durio zibethinus HOM05D004485 ORTHO05D005485 6.2e-164 582.0 710 52.8
CSS0009570 Camellia sinensis var. sinensis HOM05D004485 ORTHO05D005485 2.4e-163 580.1 705 53.3
Nitab4.5_0013389g0010 Nicotiana tabacum HOM05D004485 ORTHO05D005485 6.9e-163 578.6 774 51.3
Gohir.D06G065100 Gossypium hirsutum HOM05D004485 ORTHO05D005485 9.0e-163 578.2 711 52.9
CsaV3_2G001970 Cucumis sativus L. HOM05D004485 ORTHO05D005485 1.2e-162 577.8 720 52.9
Sed0011847 Sechium edule HOM05D004485 ORTHO05D005485 4.5e-162 575.9 737 50.9
FAN19G2910 Fragaria x ananassa HOM05D004485 ORTHO05D005485 4.9e-161 572.4 736 52.9
MELO3C004583.2 Cucumis melo HOM05D004485 ORTHO05D005485 8.4e-161 571.6 713 52.7
TWI34G0799 Tripterygium wilfordii HOM05D004485 ORTHO05D005485 1.4e-160 570.9 710 53.2
Lalb_Chr14g0371821 Lupinus albus HOM05D004485 ORTHO05D005485 3.2e-160 569.7 715 52.4
PSO210G4150 Papaver somniferum HOM05D004485 ORTHO05D005485 5.5e-160 568.9 715 52.4
Lalb_Chr24g0397331 Lupinus albus HOM05D004485 ORTHO05D005485 9.3e-160 568.2 705 55.5
Phvul.004G170300 Phaseolus vulgaris HOM05D004485 ORTHO05D005485 4.6e-159 565.8 706 56.2
PSO210G3171 Papaver somniferum HOM05D004485 ORTHO05D005485 3.0e-158 563.1 716 53.4
VMungo0464G1472 Vigna mungo HOM05D004485 ORTHO05D005485 5.1e-158 562.4 708 56.4
BolC9t54403H Brassica oleracea HOM05D004485 ORTHO05D005485 3.4e-154 549.7 718 51.4
BraA09t36912Z Brassica rapa HOM05D004485 ORTHO05D005485 5.9e-154 548.9 723 51.7
A09p12650 Brassica napus HOM05D004485 ORTHO05D005485 5.0e-153 545.8 714 51.3
C09p15010 Brassica napus HOM05D004485 ORTHO05D005485 1.9e-152 543.9 718 51.0
Thhalv10001922m.g Eutrema salsugineum HOM05D004485 ORTHO05D005485 5.5e-152 542.3 725 50.2
Hma1.2p1_0571F.1_g180870 Hydrangea macrophylla HOM05D004485 ORTHO05D005485 5.5e-152 542.3 720 50.8
Psat1g046640 Pisum sativum HOM05D004485 ORTHO05D005485 7.2e-152 542.0 704 52.8
Lj2g0014691 Lotus japonicus HOM05D004485 ORTHO05D005485 9.4e-152 541.6 726 51.5
HPP92_005563 Vanilla planifolia HOM05D004485 ORTHO05D005485 9.4e-152 541.6 477 65.2
Aqoxy7G03881 Aquilegia oxysepala HOM05D004485 ORTHO05D005485 1.2e-151 541.2 728 53.2
MBI07_g22518_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 6.1e-151 538.9 730 49.3
Os01g0744400 Oryza sativa ssp. japonica HOM05D004485 ORTHO05D005485 1.0e-150 538.1 722 50.8
CAN.G1642.10 Capsicum annuum HOM05D004485 ORTHO05D005485 6.7e-150 535.4 722 50.1
Nitab4.5_0000566g0170 Nicotiana tabacum HOM05D004485 ORTHO05D005485 1.5e-149 534.3 744 50.1
ECA236G0540 Erigeron canadensis HOM05D004485 ORTHO05D005485 7.4e-149 531.9 672 54.0
Zm00001eb153530 Zea mays HOM05D004485 ORTHO05D005485 7.4e-149 531.9 706 50.8
AUR62021427 Chenopodium quinoa HOM05D004485 ORTHO05D005485 9.7e-149 531.6 741 48.2
Zm00001eb371090 Zea mays HOM05D004485 ORTHO05D005485 1.3e-148 531.2 686 51.9
AL3G48250 Arabidopsis lyrata HOM05D004485 ORTHO05D005485 3.7e-148 529.6 715 50.6
AT2G19950 Arabidopsis thaliana HOM05D004485 ORTHO05D005485 4.8e-148 529.3 708 51.3
BcaNung04089 Brassica carinata HOM05D004485 ORTHO05D005485 6.3e-148 528.9 722 50.7
Gorai.010G076200 Gossypium raimondii HOM05D004485 ORTHO05D005485 1.8e-147 527.3 740 50.1
ClCG11G002190 Citrullus lanatus HOM05D004485 ORTHO05D005485 2.0e-146 523.9 724 48.6
Carub.0003s3420 Capsella rubella HOM05D004485 ORTHO05D005485 4.5e-146 522.7 709 50.8
Ca_25562_v3 Cicer arietinum L. HOM05D004485 ORTHO05D005485 1.1e-144 518.1 715 53.3
RcHm_v2.0_Chr2g0091661 Rosa chinensis HOM05D004485 ORTHO05D005485 1.1e-144 518.1 727 52.5
PGR102G0995 Punica granatum HOM05D004485 ORTHO05D005485 1.4e-144 517.7 727 48.4
Medtr6g088595 Medicago truncatula HOM05D004485 ORTHO05D005485 3.2e-144 516.5 705 53.5
TPR.G21387 Trifolium pratense HOM05D004485 ORTHO05D005485 5.5e-144 515.8 711 53.4
Rhsim05G0040900 Rhododendron simsii HOM05D004485 ORTHO05D005485 1.6e-143 514.2 698 49.3
Haze_25812 Corylus avellana HOM05D004485 ORTHO05D005485 2.1e-143 513.8 654 52.1
THA.LOC104820040 Tarenaya hassleriana HOM05D004485 ORTHO05D005485 2.1e-143 513.8 708 54.1
FAN26G2333 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.0e-142 511.5 736 52.4
FAN26G0748 Fragaria x ananassa HOM05D004485 ORTHO05D005485 1.4e-142 511.1 736 52.3
FvH4_1g05970 Fragaria vesca HOM05D004485 ORTHO05D005485 3.0e-142 510.0 736 51.2
ATR0705G155 Amborella trichopoda HOM05D004485 ORTHO05D005485 8.8e-142 508.4 706 49.2
CDE04G3494 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 2.0e-141 507.3 681 49.2
SGA_v2.0_scaffold129G34191 Striga asiatica HOM05D004485 ORTHO05D005485 1.4e-139 501.1 396 73.2
Aa31LG8G16840 Aethionema arabicum HOM05D004485 ORTHO05D005485 1.8e-139 500.7 723 52.1
FAN28G2435 Fragaria x ananassa HOM05D004485 ORTHO05D005485 5.3e-139 499.2 746 50.4
COL.COLO4_34764 Corchorus olitorius HOM05D004485 ORTHO05D005485 8.5e-137 491.9 710 48.2
Lsat_1_v5_gn_8_96840 Lactuca sativa HOM05D004485 ORTHO05D005485 1.4e-136 491.1 762 46.5
Peaxi162Scf00665g00331 Petunia axillaris HOM05D004485 ORTHO05D005485 2.1e-135 487.3 762 47.1
arahy.Tifrunner.gnm1.ann1.N3ID59 Arachis hypogaea HOM05D004485 ORTHO05D005485 3.6e-135 486.5 703 48.4
HanXRQChr12g0358161 Helianthus annuus HOM05D004485 ORTHO05D005485 1.0e-134 485.0 748 50.9
vmacro10859 Vaccinium macrocarpon HOM05D004485 ORTHO05D005485 8.8e-134 481.9 639 51.0
Sp3g33270 Schrenkiella parvula HOM05D004485 ORTHO05D005485 7.4e-133 478.8 729 50.6
CARHR110390 Cardamine hirsuta HOM05D004485 ORTHO05D005485 9.7e-133 478.4 706 47.7
SEGI_40884 Sequoiadendron giganteum HOM05D004485 ORTHO05D005485 2.2e-132 477.2 720 46.9
arahy.Tifrunner.gnm1.ann1.8771PM Arachis hypogaea HOM05D004485 ORTHO05D005485 3.7e-132 476.5 736 46.7
MBI01_g35400_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 2.6e-130 470.3 799 43.2
FAN23G2550 Fragaria x ananassa HOM05D004485 ORTHO05D005485 2.3e-126 457.2 746 48.1
BcaC04g22803 Brassica carinata HOM05D004485 ORTHO05D005485 1.7e-116 424.5 612 49.5
arahy.Tifrunner.gnm1.ann1.TC5UZA Arachis hypogaea HOM05D004485 ORTHO05D005485 2.0e-109 401.0 719 42.8
Ah.14g083300 Amaranthus hybridus HOM05D004485 ORTHO05D005485 4.9e-108 396.4 448 55.6
AUR62010900 Chenopodium quinoa HOM05D004485 ORTHO05D005485 1.1e-104 385.2 686 43.9
arahy.Tifrunner.gnm1.ann1.96JC9B Arachis hypogaea HOM05D004485 ORTHO05D005485 4.3e-104 383.3 719 42.7
Cc06_g10330 Coffea canephora HOM05D004485 ORTHO05D005485 1.0e-97 362.1 534 49.1
AagrBONN_evm.TU.Sc2ySwM_368.430 Anthoceros agrestis HOM05D004485 ORTHO05D005485 5.8e-93 346.3 719 38.8
Oeu064192.1 Olea europaea HOM05D004485 ORTHO05D005485 3.2e-83 313.9 236 75.4
Actinidia39785 Actinidia chinensis HOM05D004485 ORTHO05D005485 5.6e-80 303.1 226 72.6
Hund29368 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.2e-77 295.4 498 45.6
Hund29369 Selenicereus undatus HOM05D004485 ORTHO05D005485 9.9e-77 292.4 498 45.4
CDE02G0772 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.7e-76 291.6 231 71.4
Hund28808 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.0e-73 282.3 212 72.6
Hund28810 Selenicereus undatus HOM05D004485 ORTHO05D005485 1.0e-73 282.3 212 72.6
MBI07_g30871_MAGBIO Magnolia biondii HOM05D004485 ORTHO05D005485 8.1e-71 272.7 230 66.5
Cc06_g10340 Coffea canephora HOM05D004485 ORTHO05D005485 9.9e-69 265.8 186 74.7
Oeu064194.1 Olea europaea HOM05D004485 ORTHO05D005485 1.9e-59 235.0 432 43.1
Actinidia39786 Actinidia chinensis HOM05D004485 ORTHO05D005485 1.6e-58 231.9 429 42.7
Potri.006G164350 Populus trichocarpa HOM05D004485 ORTHO05D005485 1.6e-58 231.9 172 73.8
SMO356G0242 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 1.6e-58 231.9 606 35.1
CBR_g39203 Chara braunii HOM05D004485 ORTHO05D005485 4.0e-54 217.2 432 38.2
Cpa.g.sc40.65 Carica papaya HOM05D004485 ORTHO05D005485 3.7e-47 194.1 135 74.1
DCAR_012046 Daucus carota HOM05D004485 ORTHO05D005485 7.9e-42 176.4 381 40.7
Cpa.g.sc40.63 Carica papaya HOM05D004485 ORTHO05D005485 1.5e-37 162.2 445 40.2
SHI02696 Sapria himalayana HOM05D004485 ORTHO05D005485 2.9e-36 157.9 200 51.0
SMO140G0037 Selaginella moellendorffii HOM05D004485 ORTHO05D005485 9.4e-35 152.9 491 31.6
Sc08g0007940 Simmondsia chinensis HOM05D004485 ORTHO05D005485 1.1e-32 146.0 209 49.8
SalBow3G4580 Salvia bowleyana HOM05D004485 ORTHO05D005485 1.3e-28 132.5 118 61.9
Cpa.g.sc40.64 Carica papaya HOM05D004485 ORTHO05D005485 3.9e-25 120.9 86 75.6
PGR102G1041 Punica granatum HOM05D004485 ORTHO05D005485 8.2e-23 113.2 211 41.7
arahy.Tifrunner.gnm1.ann1.SL9UG3 Arachis hypogaea HOM05D004485 ORTHO05D005485 2.4e-22 111.7 240 38.3
BcaC06g36663 Brassica carinata HOM05D004485 ORTHO05D005485 3.3e-16 91.3 242 31.8
Rhsim05G0040800 Rhododendron simsii HOM05D000602 ORTHO05D001147 4.4e-16 90.9 227 38.3
Gohir.D05G357440 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.8e-15 87.4 70 68.6
Gohir.D05G357788 Gossypium hirsutum HOM05D004485 ORTHO05D005485 4.8e-15 87.4 70 68.6
Gorai.003G091600 Gossypium raimondii HOM05D004485 ORTHO05D005485 8.2e-15 86.7 72 65.3
Gohir.D04G126400 Gossypium hirsutum HOM05D004485 ORTHO05D005485 3.1e-14 84.7 94 56.4
HPP92_005577 Vanilla planifolia HOM05D004485 ORTHO05D005485 1.7e-12 79.0 65 66.2
Gohir.D01G081701 Gossypium hirsutum HOM05D004485 ORTHO05D005485 2.2e-12 78.6 70 67.1
MD06G1230800 Malus domestica HOM05D004897 ORTHO05D005928 5.2e-09 67.4 334 25.1
CDE02G3418 Ceratophyllum demersum HOM05D004485 ORTHO05D005485 1.2e-08 66.2 289 29.8
A07p00710 Brassica napus HOM05D004485 ORTHO05D005485 2.6e-08 65.1 296 27.7
Cre12.g517500 Chlamydomonas reinhardtii HOM05D004485 ORTHO05D005485 2.6e-08 65.1 455 22.6
HanXRQChr10g0316161 Helianthus annuus HOM05D004485 ORTHO05D005485 7.5e-08 63.5 50 74.0
PRCOL_00000913 Prasinoderma coloniale HOM05D004485 ORTHO05D005485 4.8e-07 60.8 455 26.2
MD14G1235400 Malus domestica HOM05D004897 ORTHO05D005928 1.1e-06 59.7 331 24.5
RcHm_v2.0_Chr7g0178571 Rosa chinensis HOM05D004897 ORTHO05D005928 1.1e-06 59.7 331 24.2


User provided reference genes

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