Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15398 Utricularia gibba HOM05D004030 ORTHO05D004952 1.3e-180 636.3 336 100.0
SGA_v2.0_scaffold1G00064 Striga asiatica HOM05D004030 ORTHO05D004952 1.4e-57 227.6 470 36.4
Migut.M01023 Erythranthe guttata HOM05D004030 ORTHO05D004952 1.4e-54 217.6 417 39.1
SalBow8G0896 Salvia bowleyana HOM05D004030 ORTHO05D004952 1.1e-46 191.4 487 32.4
Peaxi162Scf00302g00311 Petunia axillaris HOM05D004030 ORTHO05D004952 1.4e-46 191.0 414 36.7
GSVIVG01021235001 Vitis vinifera HOM05D004030 ORTHO05D004952 1.0e-44 184.9 424 35.4
PGSC0003DMG400028477 Solanum tuberosum HOM05D004030 ORTHO05D004952 3.9e-44 183.0 458 33.6
Phvul.009G089700 Phaseolus vulgaris HOM05D004030 ORTHO05D004952 1.3e-42 177.9 422 33.6
Sopen02g021480 Solanum pennellii HOM05D004030 ORTHO05D004952 8.2e-42 175.3 458 34.3
ECA248G1387 Erigeron canadensis HOM05D004030 ORTHO05D004952 4.0e-41 172.9 441 34.5
CAN.G411.88 Capsicum annuum HOM05D004030 ORTHO05D004952 6.9e-41 172.2 328 38.1
Nn3g19533 Nelumbo nucifera HOM05D004030 ORTHO05D004952 6.9e-41 172.2 436 33.9
Solyc02g072510.3 Solanum lycopersicum HOM05D004030 ORTHO05D004952 1.2e-40 171.4 457 32.8
CSS0010331 Camellia sinensis var. sinensis HOM05D004030 ORTHO05D004952 2.0e-40 170.6 330 37.0
Medtr1g087790 Medicago truncatula HOM05D004030 ORTHO05D004952 2.6e-40 170.2 423 33.3
Ca_10308_v3 Cicer arietinum L. HOM05D004030 ORTHO05D004952 1.0e-39 168.3 438 30.8
Actinidia16784 Actinidia chinensis HOM05D004030 ORTHO05D004952 2.9e-39 166.8 383 35.0
Glyma.04G063400 Glycine max HOM05D004030 ORTHO05D004952 2.9e-39 166.8 440 31.8
Dinv16793 Davidia involucrata HOM05D004030 ORTHO05D004952 5.0e-39 166.0 350 36.3
Cc02_g15190 Coffea canephora HOM05D004030 ORTHO05D004952 6.5e-39 165.6 429 34.5
MELO3C002663.2 Cucumis melo HOM05D004030 ORTHO05D004952 8.4e-39 165.2 455 33.0
CsaV3_1G033240 Cucumis sativus L. HOM05D004030 ORTHO05D004952 8.4e-39 165.2 447 33.6
VMungo1309G1983 Vigna mungo HOM05D004030 ORTHO05D004952 5.5e-38 162.5 446 31.8
Duzib235G1256 Durio zibethinus HOM05D004030 ORTHO05D004952 2.7e-37 160.2 441 32.9
TAR627G0229 Trochodendron aralioides HOM05D004030 ORTHO05D004952 2.7e-37 160.2 442 32.1
ClCG03G007580 Citrullus lanatus HOM05D004030 ORTHO05D004952 3.5e-37 159.8 456 32.9
Cfa013812 Carpinus fangiana HOM05D004030 ORTHO05D004952 1.0e-36 158.3 444 32.0
CiPaw.09G071100 Carya illinoinensis HOM05D004030 ORTHO05D004952 1.3e-36 157.9 453 32.0
Gohir.D10G036800 Gossypium hirsutum HOM05D004030 ORTHO05D004952 6.7e-36 155.6 440 31.6
Thecc.06G168200 Theobroma cacao HOM05D004030 ORTHO05D004952 1.5e-35 154.5 434 33.2
TWI39G0053 Tripterygium wilfordii HOM05D004030 ORTHO05D004952 1.5e-35 154.5 430 33.0
MD10G1277900 Malus domestica HOM05D004030 ORTHO05D004952 6.3e-34 149.1 437 33.6
Prupe.4G063800 Prunus persica HOM05D004030 ORTHO05D004952 6.3e-34 149.1 334 36.2
Sed0004310 Sechium edule HOM05D004030 ORTHO05D004952 8.2e-34 148.7 452 31.4
SEGI_23147 Sequoiadendron giganteum HOM05D004030 ORTHO05D004952 2.4e-33 147.1 426 31.0
Nitab4.5_0005171g0040 Nicotiana tabacum HOM05D004030 ORTHO05D004952 3.1e-33 146.7 344 34.3
Ciclev10015509m.g Citrus clementina HOM05D004030 ORTHO05D004952 4.1e-33 146.4 420 33.1
HanXRQChr11g0350521 Helianthus annuus HOM05D004030 ORTHO05D004952 4.1e-33 146.4 414 34.5
Haze_22485 Corylus avellana HOM05D004030 ORTHO05D004952 5.3e-33 146.0 424 31.6
Oeu043115.1 Olea europaea HOM05D004030 ORTHO05D004952 6.9e-33 145.6 441 33.3
CANSAT80G0365 Cannabis sativa HOM05D004030 ORTHO05D004952 9.0e-33 145.2 450 29.3
QL05p048142 Quercus lobata HOM05D004030 ORTHO05D004952 2.0e-32 144.1 337 36.2
MD05G1298600 Malus domestica HOM05D004030 ORTHO05D004952 3.4e-32 143.3 434 33.4
Rhsim13G0189000 Rhododendron simsii HOM05D004030 ORTHO05D004952 3.4e-32 143.3 382 34.3
CDE10G0195 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 4.5e-32 142.9 433 31.2
Gohir.A10G036100 Gossypium hirsutum HOM05D004030 ORTHO05D004952 7.7e-32 142.1 431 30.9
EL10Ac8g20580 Beta vulgaris HOM05D004030 ORTHO05D004952 1.0e-31 141.7 354 32.8
Potri.011G068100 Populus trichocarpa HOM05D004030 ORTHO05D004952 1.0e-31 141.7 434 31.8
ATR0824G134 Amborella trichopoda HOM05D004030 ORTHO05D004952 1.3e-31 141.4 425 32.7
COL.COLO4_31267 Corchorus olitorius HOM05D004030 ORTHO05D004952 1.3e-31 141.4 427 31.9
Eucgr.E02762 Eucalyptus grandis HOM05D004030 ORTHO05D004952 1.7e-31 141.0 363 33.6
Nitab4.5_0007465g0050 Nicotiana tabacum HOM05D004030 ORTHO05D004952 1.7e-31 141.0 342 33.3
Gorai.011G038700 Gossypium raimondii HOM05D004030 ORTHO05D004952 5.0e-31 139.4 428 30.4
Manes.16G041300 Manihot esculenta HOM05D004030 ORTHO05D004952 1.4e-30 137.9 428 30.8
Duzib160G0274 Durio zibethinus HOM05D004030 ORTHO05D004952 3.2e-30 136.7 427 32.8
arahy.Tifrunner.gnm1.ann1.6TT57W Arachis hypogaea HOM05D004030 ORTHO05D004952 4.2e-30 136.3 331 31.7
MBI07_g09555_MAGBIO Magnolia biondii HOM05D004030 ORTHO05D004952 5.5e-30 136.0 464 29.5
Hund21166 Selenicereus undatus HOM05D004030 ORTHO05D004952 3.6e-29 133.3 347 30.5
Cfa000628 Carpinus fangiana HOM05D004030 ORTHO05D004952 6.1e-29 132.5 446 30.9
Dinv40699 Davidia involucrata HOM05D004030 ORTHO05D004952 6.1e-29 132.5 292 38.0
Lj6g0006857 Lotus japonicus HOM05D004030 ORTHO05D004952 7.9e-29 132.1 449 30.3
DCAR_020881 Daucus carota HOM05D004030 ORTHO05D004952 1.4e-28 131.3 455 30.8
Aqoxy1G02017 Aquilegia oxysepala HOM05D004030 ORTHO05D004952 1.8e-28 131.0 440 29.8
Actinidia35586 Actinidia chinensis HOM05D004030 ORTHO05D004952 3.0e-28 130.2 300 38.3
Lalb_Chr18g0054631 Lupinus albus HOM05D004030 ORTHO05D004952 1.1e-27 128.3 428 29.0
Psat6g163160 Pisum sativum HOM05D004030 ORTHO05D004952 2.5e-27 127.1 375 30.1
arahy.Tifrunner.gnm1.ann1.HYDG6Q Arachis hypogaea HOM05D004030 ORTHO05D004952 1.3e-26 124.8 510 26.1
AUR62027698 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.8e-26 123.6 324 31.8
AUR62031227 Chenopodium quinoa HOM05D004030 ORTHO05D004952 2.8e-26 123.6 313 32.3
SalBow5G1441 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.7e-26 123.2 244 37.7
arahy.Tifrunner.gnm1.ann1.M207AG Arachis hypogaea HOM05D004030 ORTHO05D004952 8.2e-26 122.1 317 30.3
Potri.004G058700 Populus trichocarpa HOM05D004030 ORTHO05D004952 8.2e-26 122.1 424 30.7
SalBow5G1832 Salvia bowleyana HOM05D004030 ORTHO05D002854 1.1e-25 121.7 240 39.2
Lj9A197T43 Lonicera japonica HOM05D004030 ORTHO05D004952 3.1e-25 120.2 152 52.0
DCAR_005202 Daucus carota HOM05D004030 ORTHO05D004952 4.1e-25 119.8 464 30.0
FAN25G0294 Fragaria x ananassa HOM05D004030 ORTHO05D004952 6.9e-25 119.0 432 30.6
FAN21G1198 Fragaria x ananassa HOM05D004030 ORTHO05D004952 9.1e-25 118.6 426 29.8
Ah.09g233420 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.2e-24 118.2 313 33.9
Glyma.06G064600 Glycine max HOM05D004030 ORTHO05D004952 2.6e-24 117.1 380 30.5
RcHm_v2.0_Chr5g0011231 Rosa chinensis HOM05D004030 ORTHO05D004952 1.7e-23 114.4 373 30.6
Haze_06204 Corylus avellana HOM05D004030 ORTHO05D004952 2.2e-23 114.0 440 28.9
FAN11G3556 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.2e-23 114.0 432 29.2
SalBow5G5317 Salvia bowleyana HOM05D004030 ORTHO05D004952 3.8e-23 113.2 249 37.8
Sabra11G0049100 Salix brachista HOM05D004030 ORTHO05D004952 8.5e-23 112.1 477 30.0
PSO063G1415 Papaver somniferum HOM05D004030 ORTHO05D004952 1.1e-22 111.7 369 29.5
FvH4_3g07540 Fragaria vesca HOM05D004030 ORTHO05D004952 1.4e-22 111.3 432 28.9
PGR031G0618 Punica granatum HOM05D004030 ORTHO05D004952 3.2e-22 110.2 355 31.8
PSO782G4674 Papaver somniferum HOM05D004030 ORTHO05D004952 7.2e-22 109.0 363 28.9
CARHR028550 Cardamine hirsuta HOM05D004030 ORTHO05D004952 7.9e-21 105.5 398 29.6
Cpa.g.sc7.87 Carica papaya HOM05D004030 ORTHO05D004952 7.9e-21 105.5 141 48.2
BcaB07g32509 Brassica carinata HOM05D004030 ORTHO05D004952 2.3e-20 104.0 353 32.3
Zm00001eb370530 Zea mays HOM05D004030 ORTHO05D004952 3.9e-20 103.2 331 29.0
AL1G42980 Arabidopsis lyrata HOM05D004030 ORTHO05D004952 5.1e-20 102.8 227 37.0
AT1G29220 Arabidopsis thaliana HOM05D004030 ORTHO05D004952 8.8e-20 102.1 160 46.2
Carub.0001s2743 Capsella rubella HOM05D004030 ORTHO05D004952 8.8e-20 102.1 283 32.9
Manes.17G057500 Manihot esculenta HOM05D004030 ORTHO05D004952 1.1e-19 101.7 338 31.4
Os01g0759700 Oryza sativa ssp. japonica HOM05D004030 ORTHO05D004952 1.5e-19 101.3 331 30.8
Sp1g25170 Schrenkiella parvula HOM05D004030 ORTHO05D004952 7.4e-19 99.0 357 30.8
CDE10G0435 Ceratophyllum demersum HOM05D004030 ORTHO05D004952 9.7e-19 98.6 146 44.5
Thhalv10008084m.g Eutrema salsugineum HOM05D004030 ORTHO05D004952 9.7e-19 98.6 317 30.6
Nn1g02598 Nelumbo nucifera HOM05D004030 ORTHO05D004952 9.7e-19 98.6 159 45.3
HPP92_021480 Vanilla planifolia HOM05D004030 ORTHO05D004952 9.7e-19 98.6 331 29.9
Lsat_1_v5_gn_1_111240 Lactuca sativa HOM05D004030 ORTHO05D004952 2.2e-18 97.4 448 27.5
arahy.Tifrunner.gnm1.ann1.G7P63M Arachis hypogaea HOM05D004030 ORTHO05D004952 2.8e-18 97.1 254 31.9
SalBow5G5526 Salvia bowleyana HOM05D004030 ORTHO05D004952 2.8e-18 97.1 232 34.9
A09p37120 Brassica napus HOM05D004030 ORTHO05D004952 3.7e-18 96.7 346 30.6
BraA09t39228Z Brassica rapa HOM05D004030 ORTHO05D004952 3.7e-18 96.7 348 30.5
vmacro03922 Vaccinium macrocarpon HOM05D004030 ORTHO05D004952 5.3e-17 92.8 168 42.9
TPR.G40724 Trifolium pratense HOM05D004030 ORTHO05D004952 9.1e-17 92.0 140 45.0
FAN11G0126 Fragaria x ananassa HOM05D004030 ORTHO05D004952 1.2e-16 91.7 325 29.8
BcaC05g26946 Brassica carinata HOM05D004030 ORTHO05D004952 1.5e-16 91.3 349 30.9
C05p27930 Brassica napus HOM05D004030 ORTHO05D004952 1.5e-16 91.3 349 30.9
arahy.Tifrunner.gnm1.ann1.JIP48Q Arachis hypogaea HOM05D004030 ORTHO05D004952 4.5e-16 89.7 298 27.9
BolC5t31519H Brassica oleracea HOM05D004030 ORTHO05D004952 4.5e-16 89.7 361 30.7
FvH4_3g37800 Fragaria vesca HOM05D004030 ORTHO05D004952 1.7e-15 87.8 396 28.0
Sc07g0007700 Simmondsia chinensis HOM05D004030 ORTHO05D004952 2.2e-15 87.4 233 28.3
Aa31LG6G6290 Aethionema arabicum HOM05D004030 ORTHO05D004952 5.0e-15 86.3 395 28.1
arahy.Tifrunner.gnm1.ann1.LWKQ47 Arachis hypogaea HOM05D004030 ORTHO05D004952 6.5e-15 85.9 217 31.3
Atru.chr10.1642 Acer truncatum HOM05D004030 ORTHO05D004952 2.5e-14 84.0 329 28.9
FAN16G1462 Fragaria x ananassa HOM05D004030 ORTHO05D004952 2.7e-13 80.5 276 29.7
Lalb_Chr15g0086161 Lupinus albus HOM05D004030 ORTHO05D004952 3.9e-12 76.6 224 30.4
Sabra04G0038000 Salix brachista HOM05D004030 ORTHO05D004952 2.6e-11 73.9 130 39.2
THA.LOC104820602 Tarenaya hassleriana HOM05D004030 ORTHO05D004952 2.6e-11 73.9 370 27.0
Mapoly0022s0014 Marchantia polymorpha HOM05D004030 ORTHO05D004952 5.7e-11 72.8 411 27.0
FAN23G1607 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.6e-08 64.7 110 39.1
Ah.16g108870 Amaranthus hybridus HOM05D004030 ORTHO05D004952 2.9e-07 60.5 157 31.2
Ah.16g108300 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.8e-07 60.1 157 31.2
Ah.16g108330 Amaranthus hybridus HOM05D004030 ORTHO05D004952 3.8e-07 60.1 157 31.2
Actinidia37045 Actinidia chinensis HOM05D004030 ORTHO05D004952 6.5e-07 59.3 193 31.1
Lj1A1189T62 Lonicera japonica HOM05D004030 ORTHO05D004952 6.5e-07 59.3 62 56.5
Ah.16g107150 Amaranthus hybridus HOM05D004030 ORTHO05D004952 1.5e-06 58.2 156 30.8
AagrBONN_evm.TU.Sc2ySwM_344.2041 Anthoceros agrestis HOM05D004030 ORTHO05D004952 2.5e-06 57.4 449 24.7
AagrBONN_evm.TU.Sc2ySwM_362.2754 Anthoceros agrestis HOM05D004030 ORTHO05D004952 3.2e-06 57.0 435 25.5
SalBow5G0967 Salvia bowleyana HOM05D004030 ORTHO05D004952 5.5e-06 56.2 81 40.7
Ah.16g108890 Amaranthus hybridus HOM05D004030 ORTHO05D004952 9.4e-06 55.5 170 30.0
BcaB03g13895 Brassica carinata HOM05D004030 ORTHO05D004952 9.4e-06 55.5 120 40.0
Lalb_Chr15g0086171 Lupinus albus HOM05D004030 ORTHO05D004952 9.4e-06 55.5 82 47.6


User provided reference genes

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