Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15382 Utricularia gibba HOM05D005413 ORTHO05D006536 1.7e-166 589.3 308 100.0
MSTRG.12398 Avicennia marina HOM05D005413 ORTHO05D006536 2.7e-68 263.1 317 49.8
Migut.D02382 Erythranthe guttata HOM05D005413 ORTHO05D006536 4.8e-57 225.7 262 53.1
CSS0023574 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 1.4e-56 224.2 205 59.0
Lj2A950G18 Lonicera japonica HOM05D005413 ORTHO05D006536 6.5e-54 215.3 206 55.8
Nitab4.5_0000158g0110 Nicotiana tabacum HOM05D005413 ORTHO05D006536 3.2e-53 213.0 322 42.5
Oeu031446.2 Olea europaea HOM05D005413 ORTHO05D006536 5.5e-53 212.2 258 47.7
CiPaw.14G092700 Carya illinoinensis HOM05D005413 ORTHO05D006536 1.2e-52 211.1 202 58.4
Actinidia37056 Actinidia chinensis HOM05D005413 ORTHO05D006536 4.7e-52 209.1 317 44.8
Dinv18856 Davidia involucrata HOM05D005413 ORTHO05D006536 1.4e-51 207.6 203 55.7
Peaxi162Scf00429g00512 Petunia axillaris HOM05D005413 ORTHO05D006536 2.3e-51 206.8 198 56.1
COL.COLO4_00160 Corchorus olitorius HOM05D005413 ORTHO05D006536 6.7e-51 205.3 208 53.8
Ciclev10028962m.g Citrus clementina HOM05D005413 ORTHO05D006536 1.2e-50 204.5 209 51.7
Thecc.09G267600 Theobroma cacao HOM05D005413 ORTHO05D006536 1.2e-50 204.5 323 40.9
Nitab4.5_0008364g0010 Nicotiana tabacum HOM05D005413 ORTHO05D006536 5.7e-50 202.2 228 51.8
Actinidia11676 Actinidia chinensis HOM05D005413 ORTHO05D006536 1.3e-49 201.1 207 54.6
PGSC0003DMG400002998 Solanum tuberosum HOM05D005413 ORTHO05D006536 2.8e-49 199.9 271 47.2
SalBow6G6902 Salvia bowleyana HOM05D005413 ORTHO05D006536 8.3e-49 198.4 260 48.5
Cc01_g07840 Coffea canephora HOM05D005413 ORTHO05D006536 1.8e-48 197.2 217 51.2
Duzib170G0305 Durio zibethinus HOM05D005413 ORTHO05D006536 1.8e-48 197.2 318 41.2
QL01p019216 Quercus lobata HOM05D005413 ORTHO05D006536 4.1e-48 196.1 324 41.4
Hma1.2p1_0101F.1_g049660 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 7.0e-48 195.3 206 51.5
GSVIVG01037530001 Vitis vinifera HOM05D005413 ORTHO05D006536 1.2e-47 194.5 205 51.7
RcHm_v2.0_Chr5g0049091 Rosa chinensis HOM05D005413 ORTHO05D006536 1.6e-47 194.1 261 42.9
FAN11G2501 Fragaria x ananassa HOM05D005413 ORTHO05D006536 3.5e-47 193.0 260 42.3
Solyc11g071950.3 Solanum lycopersicum HOM05D005413 ORTHO05D006536 5.9e-47 192.2 271 45.8
Sopen11g029620 Solanum pennellii HOM05D005413 ORTHO05D006536 1.0e-46 191.4 325 43.7
FvH4_3g26150 Fragaria vesca HOM05D005413 ORTHO05D006536 1.3e-46 191.0 260 41.5
Atru.chr3.3078 Acer truncatum HOM05D005413 ORTHO05D006536 1.7e-46 190.7 205 50.2
Atru.chr3.3087 Acer truncatum HOM05D005413 ORTHO05D006536 1.7e-46 190.7 205 50.2
TAR623G0045 Trochodendron aralioides HOM05D005413 ORTHO05D006536 6.5e-46 188.7 209 50.7
Duzib168G1403 Durio zibethinus HOM05D005413 ORTHO05D006536 3.2e-45 186.4 211 50.7
FAN25G1874 Fragaria x ananassa HOM05D005413 ORTHO05D006536 4.2e-45 186.0 260 41.2
ECA238G0598 Erigeron canadensis HOM05D005413 ORTHO05D006536 9.4e-45 184.9 218 50.9
vmacro14313 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.2e-44 184.5 376 38.3
Gohir.D05G079900 Gossypium hirsutum HOM05D005413 ORTHO05D006536 1.6e-44 184.1 211 49.8
Gorai.009G081500 Gossypium raimondii HOM05D005413 ORTHO05D006536 1.6e-44 184.1 211 49.8
Gohir.A05G077100 Gossypium hirsutum HOM05D005413 ORTHO05D006536 3.6e-44 183.0 320 39.4
TWI79G1192 Tripterygium wilfordii HOM05D005413 ORTHO05D006536 3.6e-44 183.0 205 50.2
FAN16G0400 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.0e-43 181.4 294 38.4
FAN16G2334 Fragaria x ananassa HOM05D005413 ORTHO05D006536 1.0e-43 181.4 294 38.4
Nn2g14375 Nelumbo nucifera HOM05D005413 ORTHO05D006536 1.0e-43 181.4 207 49.3
Lalb_Chr19g0136161 Lupinus albus HOM05D005413 ORTHO05D006536 1.4e-43 181.0 265 44.2
Medtr4g050330 Medicago truncatula HOM05D005413 ORTHO05D006536 1.4e-43 181.0 268 41.4
TPR.G4599 Trifolium pratense HOM05D005413 ORTHO05D006536 5.7e-42 175.6 263 39.9
MD11G1174800 Malus domestica HOM05D005413 ORTHO05D006536 1.3e-41 174.5 205 45.4
Rhsim01G0199900 Rhododendron simsii HOM05D005413 ORTHO05D006536 8.3e-41 171.8 421 34.9
arahy.Tifrunner.gnm1.ann1.C0JSMI Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-40 171.0 205 45.9
arahy.Tifrunner.gnm1.ann1.K4CWT5 Arachis hypogaea HOM05D005413 ORTHO05D006536 1.4e-40 171.0 205 45.9
Eucgr.J00585 Eucalyptus grandis HOM05D005413 ORTHO05D006536 1.4e-40 171.0 306 39.2
Prupe.6G147200 Prunus persica HOM05D005413 ORTHO05D006536 1.8e-40 170.6 315 35.9
TAR633G2414 Trochodendron aralioides HOM05D005413 ORTHO05D006536 5.4e-40 169.1 203 46.3
Psat7g200680 Pisum sativum HOM05D005413 ORTHO05D006536 7.0e-40 168.7 264 39.0
SGA_v2.0_scaffold22G09835 Striga asiatica HOM05D005413 ORTHO05D006536 1.6e-39 167.5 182 54.9
Rhsim01G0199600 Rhododendron simsii HOM05D005413 ORTHO05D006536 5.9e-39 165.6 432 33.6
Thhalv10014324m.g Eutrema salsugineum HOM05D005413 ORTHO05D006536 1.0e-38 164.9 318 36.2
ClCG02G022490 Citrullus lanatus HOM05D005413 ORTHO05D006536 2.3e-38 163.7 201 49.3
CsaV3_6G038630 Cucumis sativus L. HOM05D005413 ORTHO05D006536 2.3e-38 163.7 200 47.5
Lalb_Chr03g0028501 Lupinus albus HOM05D005413 ORTHO05D006536 2.3e-38 163.7 264 40.9
Lj3g0006130 Lotus japonicus HOM05D005413 ORTHO05D006536 2.9e-38 163.3 204 44.6
Ca_19483_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 5.0e-38 162.5 210 43.3
MELO3C014525.2 Cucumis melo HOM05D005413 ORTHO05D006536 5.0e-38 162.5 200 47.5
BcaC01g06609 Brassica carinata HOM05D005413 ORTHO05D006536 6.6e-38 162.2 315 35.2
BolC3t13687H Brassica oleracea HOM05D005413 ORTHO05D006536 6.6e-38 162.2 315 35.2
Dinv04422 Davidia involucrata HOM05D005413 ORTHO05D006536 6.6e-38 162.2 206 44.7
C03p12140 Brassica napus HOM05D005413 ORTHO05D006536 2.5e-37 160.2 315 34.9
Hund06812 Selenicereus undatus HOM05D005413 ORTHO05D006536 2.5e-37 160.2 204 47.1
VMungo1127G2102 Vigna mungo HOM05D005413 ORTHO05D006536 2.5e-37 160.2 264 39.4
MBI15_g31416_MAGBIO Magnolia biondii HOM05D005413 ORTHO05D006536 3.3e-37 159.8 201 43.8
BraA03t10367Z Brassica rapa HOM05D005413 ORTHO05D006536 5.5e-37 159.1 315 34.9
FAN21G0466 Fragaria x ananassa HOM05D005413 ORTHO05D006536 5.5e-37 159.1 260 37.7
DCAR_018207 Daucus carota HOM05D005413 ORTHO05D006536 4.7e-36 156.0 235 41.3
Manes.11G103700 Manihot esculenta HOM05D005413 ORTHO05D006536 4.7e-36 156.0 205 43.9
A03p10550 Brassica napus HOM05D005413 ORTHO05D006536 6.1e-36 155.6 315 34.6
Phvul.011G100200 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 1.4e-35 154.5 207 43.0
DCAR_012252 Daucus carota HOM05D005413 ORTHO05D006536 4.0e-35 152.9 216 43.5
MD03G1159500 Malus domestica HOM05D005413 ORTHO05D006536 4.0e-35 152.9 321 34.0
PGR119G0748 Punica granatum HOM05D005413 ORTHO05D006536 8.9e-35 151.8 209 44.0
HanXRQChr05g0137071 Helianthus annuus HOM05D005413 ORTHO05D006536 1.5e-34 151.0 229 45.0
CSS0050484 Camellia sinensis var. sinensis HOM05D005413 ORTHO05D006536 3.7e-33 146.4 210 43.3
Glyma.12G095900 Glycine max HOM05D005413 ORTHO05D006536 4.9e-33 146.0 207 41.5
Hma1.2p1_0098F.1_g048260 Hydrangea macrophylla HOM05D005413 ORTHO05D006536 1.4e-32 144.4 198 41.9
Sabra10G0191100 Salix brachista HOM05D005413 ORTHO05D006536 1.4e-32 144.4 205 42.9
AUR62024117 Chenopodium quinoa HOM05D005413 ORTHO05D006536 4.1e-32 142.9 210 43.8
Aqoxy1G00612 Aquilegia oxysepala HOM05D005413 ORTHO05D006536 5.4e-32 142.5 209 38.8
CARHR191490 Cardamine hirsuta HOM05D005413 ORTHO05D006536 9.2e-32 141.7 320 33.8
Sc09g0004800 Simmondsia chinensis HOM05D005413 ORTHO05D006536 9.2e-32 141.7 206 43.2
AUR62005613 Chenopodium quinoa HOM05D005413 ORTHO05D006536 5.9e-31 139.0 208 44.2
Potri.010G244600 Populus trichocarpa HOM05D005413 ORTHO05D006536 5.9e-31 139.0 206 41.3
ATR1120G017 Amborella trichopoda HOM05D005413 ORTHO05D006536 1.7e-30 137.5 211 39.3
Sp6g23150 Schrenkiella parvula HOM05D005413 ORTHO05D006536 2.9e-30 136.7 318 33.0
Glyma.11G171773 Glycine max HOM05D005413 ORTHO05D006536 5.0e-30 136.0 223 37.7
HPP92_015644 Vanilla planifolia HOM05D005413 ORTHO05D006536 8.6e-30 135.2 202 42.6
Potri.008G001700 Populus trichocarpa HOM05D005413 ORTHO05D006536 1.1e-29 134.8 211 40.8
Sed0018758 Sechium edule HOM05D005413 ORTHO05D006536 2.5e-29 133.7 164 47.6
Potri.008G015500 Populus trichocarpa HOM05D005413 ORTHO05D006536 3.3e-29 133.3 211 40.3
EL10Ac6g13493 Beta vulgaris HOM05D005413 ORTHO05D006536 9.5e-29 131.7 204 41.7
QL04p048808 Quercus lobata HOM05D005413 ORTHO05D006536 1.2e-28 131.3 231 37.2
Os03g0274700 Oryza sativa ssp. japonica HOM05D005413 ORTHO05D006536 4.7e-28 129.4 220 39.1
Zm00001eb012330 Zea mays HOM05D005413 ORTHO05D006536 8.0e-28 128.6 211 39.3
CDE04G1023 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 1.0e-27 128.3 232 40.1
Ah.03g136210 Amaranthus hybridus HOM05D005413 ORTHO05D006536 1.2e-26 124.8 209 40.7
Rhsim03G0094100 Rhododendron simsii HOM05D005413 ORTHO05D006536 2.0e-26 124.0 134 50.0
Cfa010502 Carpinus fangiana HOM05D005413 ORTHO05D006536 3.4e-26 123.2 203 38.9
Dinv03807 Davidia involucrata HOM05D005413 ORTHO05D006536 3.4e-26 123.2 164 45.1
Sabra08G0009400 Salix brachista HOM05D005413 ORTHO05D006536 3.4e-26 123.2 203 40.4
BcaB01g04747 Brassica carinata HOM05D005413 ORTHO05D006536 4.4e-26 122.9 303 31.7
Haze_03431 Corylus avellana HOM05D005413 ORTHO05D006536 9.8e-26 121.7 229 35.4
SEGI_03865 Sequoiadendron giganteum HOM05D005413 ORTHO05D006536 2.2e-25 120.6 213 40.4
PSO339G2181 Papaver somniferum HOM05D005413 ORTHO05D006536 4.9e-25 119.4 239 37.2
PSO384G0849 Papaver somniferum HOM05D005413 ORTHO05D006536 1.1e-24 118.2 239 36.8
vmacro07276 Vaccinium macrocarpon HOM05D005413 ORTHO05D006536 1.9e-24 117.5 134 48.5
CDE07G0886 Ceratophyllum demersum HOM05D005413 ORTHO05D006536 5.4e-24 115.9 215 37.7
Lsat_1_v5_gn_2_106300 Lactuca sativa HOM05D005413 ORTHO05D006536 3.5e-23 113.2 185 40.5
Thecc.10G119400 Theobroma cacao HOM05D005413 ORTHO05D006536 1.3e-22 111.3 205 37.6
Haze_03425 Corylus avellana HOM05D005413 ORTHO05D006536 7.3e-21 105.5 199 36.2
Oeu029208.1 Olea europaea HOM05D005413 ORTHO05D006536 2.8e-20 103.6 123 48.0
Aa31LG1G13390 Aethionema arabicum HOM05D005413 ORTHO05D006536 1.1e-19 101.7 329 28.9
arahy.Tifrunner.gnm1.ann1.0IPW5R Arachis hypogaea HOM05D005413 ORTHO05D006536 1.1e-19 101.7 207 37.7
Oeu033267.1 Olea europaea HOM05D005413 ORTHO05D006536 1.1e-19 101.7 205 35.6
Dinv33562 Davidia involucrata HOM05D005413 ORTHO05D006536 2.0e-18 97.4 209 35.9
Ca_10423_v3 Cicer arietinum L. HOM05D005413 ORTHO05D006536 3.4e-18 96.7 197 33.0
TPR.G10267 Trifolium pratense HOM05D005413 ORTHO05D006536 3.4e-18 96.7 130 40.8
Lj5g0017620 Lotus japonicus HOM05D005413 ORTHO05D006536 4.4e-18 96.3 201 35.3
arahy.Tifrunner.gnm1.ann1.BD57S3 Arachis hypogaea HOM05D005413 ORTHO05D006536 5.8e-18 95.9 207 36.2
BcaNung07133 Brassica carinata HOM05D005413 ORTHO05D006536 9.8e-18 95.1 128 46.1
AL6G33000 Arabidopsis lyrata HOM05D005413 ORTHO05D006536 2.2e-17 94.0 317 26.5
Medtr1g090350 Medicago truncatula HOM05D005413 ORTHO05D006536 4.9e-17 92.8 130 38.5
SEGI_29962 Sequoiadendron giganteum HOM05D005852 ORTHO05D000002 4.9e-17 92.8 208 34.1
Carub.0006s1968 Capsella rubella HOM05D005413 ORTHO05D006536 6.4e-17 92.4 321 26.8
AT5G22040 Arabidopsis thaliana HOM05D005413 ORTHO05D006536 2.4e-16 90.5 217 31.3
THA.LOC104815083 Tarenaya hassleriana HOM05D005413 ORTHO05D006536 2.4e-16 90.5 219 35.2
Mapoly0068s0092 Marchantia polymorpha HOM05D005852 ORTHO05D006688 3.2e-16 90.1 219 33.8
Phvul.007G136700 Phaseolus vulgaris HOM05D005413 ORTHO05D006536 3.2e-16 90.1 172 36.6
Lalb_Chr21g0312751 Lupinus albus HOM05D005413 ORTHO05D006536 2.7e-15 87.0 119 43.7
Lj2C36T10 Lonicera japonica HOM05D005413 ORTHO05D006536 1.0e-14 85.1 179 35.2
AagrBONN_evm.TU.Sc2ySwM_344.2258 Anthoceros agrestis HOM05D004246 ORTHO05D005035 3.0e-14 83.6 181 35.9
THA.LOC104810942 Tarenaya hassleriana HOM05D001091 ORTHO05D001020 7.3e-13 79.0 201 31.8
Cpa.g.sc33.125 Carica papaya HOM05D005413 ORTHO05D006536 8.1e-12 75.5 83 50.6
SMO236G0022 Selaginella moellendorffii HOM05D017472 ORTHO05D006688 2.6e-10 70.5 194 29.4
PGR044G1324 Punica granatum HOM05D003044 ORTHO05D001869 7.1e-08 62.4 69 46.4
BcaB05g22753 Brassica carinata HOM05D005413 ORTHO05D006536 2.7e-07 60.5 73 47.9
QL12p019002 Quercus lobata HOM05D005852 ORTHO05D006688 3.5e-07 60.1 152 38.2
CBR_g31172 Chara braunii HOM05D005852 ORTHO05D006688 5.1e-06 56.2 72 44.4


User provided reference genes

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