Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15279 Utricularia gibba HOM05D003532 ORTHO05D003298 0.0e+00 2266.9 1138 100.0
PGR083G2272 Punica granatum HOM05D003532 ORTHO05D003298 0.0e+00 1124.8 1352 46.8
Oeu019616.1 Olea europaea HOM05D003532 ORTHO05D003298 0.0e+00 1107.4 1378 45.9
TWI39G0358 Tripterygium wilfordii HOM05D003532 ORTHO05D003298 0.0e+00 1102.0 1395 44.9
Nitab4.5_0003218g0080 Nicotiana tabacum HOM05D003532 ORTHO05D003298 0.0e+00 1097.0 1321 46.3
Manes.15G064000 Manihot esculenta HOM05D003532 ORTHO05D003298 0.0e+00 1094.3 1380 44.7
CiPaw.11G200200 Carya illinoinensis HOM05D003532 ORTHO05D003298 0.0e+00 1088.6 1389 45.1
Prupe.4G231800 Prunus persica HOM05D003532 ORTHO05D003298 0.0e+00 1083.6 1388 44.5
Atru.chr2.3624 Acer truncatum HOM05D003532 ORTHO05D003298 0.0e+00 1080.5 1383 43.4
Dinv10304 Davidia involucrata HOM05D003532 ORTHO05D003298 0.0e+00 1078.2 1188 49.3
QL08p005936 Quercus lobata HOM05D003532 ORTHO05D003298 0.0e+00 1077.0 1376 45.0
MD03G1189500 Malus domestica HOM05D003532 ORTHO05D003298 7.8e-312 1073.9 1378 44.2
Ciclev10007256m.g Citrus clementina HOM05D003532 ORTHO05D003298 2.6e-310 1068.9 1375 43.9
Eucgr.F00625 Eucalyptus grandis HOM05D003532 ORTHO05D003298 2.6e-310 1068.9 1353 44.5
Duzib213G0377 Durio zibethinus HOM05D003532 ORTHO05D003298 3.4e-310 1068.5 1377 44.4
Cfa020236 Carpinus fangiana HOM05D003532 ORTHO05D003298 2.2e-309 1065.8 1382 44.2
Gorai.002G095800 Gossypium raimondii HOM05D003532 ORTHO05D003298 2.2e-309 1065.8 1380 44.2
Lalb_Chr15g0081911 Lupinus albus HOM05D003532 ORTHO05D003298 2.5e-308 1062.4 1373 44.4
RcHm_v2.0_Chr5g0042451 Rosa chinensis HOM05D003532 ORTHO05D003298 4.2e-308 1061.6 1392 43.5
vmacro11564 Vaccinium macrocarpon HOM05D003532 ORTHO05D003298 5.5e-308 1061.2 1403 43.4
CSS0034495 Camellia sinensis var. sinensis HOM05D003532 ORTHO05D003298 9.4e-308 1060.4 1377 44.2
COL.COLO4_09777 Corchorus olitorius HOM05D003532 ORTHO05D003298 3.6e-307 1058.5 1325 45.7
Cc05_g14600 Coffea canephora HOM05D003532 ORTHO05D003298 4.7e-307 1058.1 1375 43.3
FAN21G0475 Fragaria x ananassa HOM05D003532 ORTHO05D003298 8.0e-307 1057.4 1387 43.5
FAN11G2286 Fragaria x ananassa HOM05D003532 ORTHO05D003298 1.1e-305 1053.5 1364 43.5
FvH4_3g23950 Fragaria vesca HOM05D003532 ORTHO05D003298 1.5e-305 1053.1 1364 43.5
Gohir.D01G072800 Gossypium hirsutum HOM05D003532 ORTHO05D003298 4.4e-305 1051.6 1379 43.7
Thecc.07G023400 Theobroma cacao HOM05D003532 ORTHO05D003298 9.7e-305 1050.4 1377 44.1
Haze_09779 Corylus avellana HOM05D003532 ORTHO05D003298 1.7e-304 1049.7 1384 43.8
Sabra16G0238200 Salix brachista HOM05D003532 ORTHO05D003298 2.2e-304 1049.3 1368 43.7
Glyma.08G325400 Glycine max HOM05D003532 ORTHO05D003298 6.3e-304 1047.7 1376 43.4
Nitab4.5_0002423g0060 Nicotiana tabacum HOM05D003532 ORTHO05D003298 8.2e-304 1047.3 1318 44.8
FAN25G3696 Fragaria x ananassa HOM05D003532 ORTHO05D003298 1.8e-303 1046.2 1388 43.1
Potri.001G361200 Populus trichocarpa HOM05D003532 ORTHO05D003298 1.8e-303 1046.2 1362 44.1
Glyma.18G081800 Glycine max HOM05D003532 ORTHO05D003298 2.4e-303 1045.8 1374 43.3
Gohir.A01G086600 Gossypium hirsutum HOM05D003532 ORTHO05D003298 2.4e-303 1045.8 1379 43.7
Medtr3g055970 Medicago truncatula HOM05D003532 ORTHO05D003298 2.6e-302 1042.3 1378 43.0
TAR631G0007 Trochodendron aralioides HOM05D003532 ORTHO05D003298 2.6e-302 1042.3 1391 43.1
Solyc03g112750.4 Solanum lycopersicum HOM05D003532 ORTHO05D003298 2.9e-301 1038.9 1371 43.1
TPR.G1921 Trifolium pratense HOM05D003532 ORTHO05D003298 1.1e-300 1036.9 1377 43.1
Phvul.006G052900 Phaseolus vulgaris HOM05D003532 ORTHO05D003298 1.5e-300 1036.6 1373 43.0
Nn1g07430 Nelumbo nucifera HOM05D003532 ORTHO05D003298 2.1e-299 1032.7 1385 43.4
Sed0014342 Sechium edule HOM05D003532 ORTHO05D003298 1.0e-298 1030.4 1356 42.3
Psat5g171200 Pisum sativum HOM05D003532 ORTHO05D003298 2.6e-297 1025.8 1358 43.0
FAN16G2517 Fragaria x ananassa HOM05D003532 ORTHO05D003298 5.7e-297 1024.6 1386 42.4
Sopen03g031830 Solanum pennellii HOM05D003532 ORTHO05D003298 5.7e-297 1024.6 1371 42.7
ClCG09G021030 Citrullus lanatus HOM05D003532 ORTHO05D003298 4.8e-296 1021.5 1355 42.8
Aqoxy1G04019 Aquilegia oxysepala HOM05D003532 ORTHO05D003298 1.4e-295 1020.0 1368 42.8
Lsat_1_v5_gn_0_15220 Lactuca sativa HOM05D003532 ORTHO05D003298 5.4e-295 1018.1 1379 42.4
Migut.M01683 Erythranthe guttata HOM05D003532 ORTHO05D003298 2.2e-293 1012.7 1368 43.1
CANSAT11G0309 Cannabis sativa HOM05D003532 ORTHO05D003298 5.0e-293 1011.5 1398 42.6
Ca_16739_v3 Cicer arietinum L. HOM05D003532 ORTHO05D003298 1.1e-292 1010.4 1243 45.7
ECA240G1125 Erigeron canadensis HOM05D003532 ORTHO05D003298 2.5e-292 1009.2 1322 43.3
PSO210G6712 Papaver somniferum HOM05D003532 ORTHO05D003298 2.5e-292 1009.2 1254 44.5
FAN25G2872 Fragaria x ananassa HOM05D003532 ORTHO05D003298 1.6e-291 1006.5 1388 41.9
THA.LOC104811650 Tarenaya hassleriana HOM05D003532 ORTHO05D003298 6.1e-291 1004.6 1188 46.0
Hund23137 Selenicereus undatus HOM05D003532 ORTHO05D003298 2.2e-288 996.1 1375 42.3
Ah.06g181150 Amaranthus hybridus HOM05D003532 ORTHO05D003298 4.1e-287 991.9 1304 43.2
CsaV3_7G018660 Cucumis sativus L. HOM05D003532 ORTHO05D003298 9.1e-287 990.7 1352 41.7
arahy.Tifrunner.gnm1.ann1.5HZ9E9 Arachis hypogaea HOM05D003532 ORTHO05D003298 2.3e-285 986.1 1416 41.2
MELO3C024898.2 Cucumis melo HOM05D003532 ORTHO05D003298 8.6e-285 984.2 1352 41.7
AT5G55540 Arabidopsis thaliana HOM05D003532 ORTHO05D003298 1.5e-284 983.4 1188 45.5
AL8G31090 Arabidopsis lyrata HOM05D003532 ORTHO05D003298 4.2e-284 981.9 1188 45.2
Lj6g0018545 Lotus japonicus HOM05D003532 ORTHO05D003298 8.0e-283 977.6 1379 42.0
VMungo0540G1592 Vigna mungo HOM05D003532 ORTHO05D003298 5.2e-282 974.9 1371 41.6
CARHR268860 Cardamine hirsuta HOM05D003532 ORTHO05D003298 8.3e-280 967.6 1183 44.6
Peaxi162Scf00568g00016 Petunia axillaris HOM05D003532 ORTHO05D003298 3.2e-279 965.7 1380 40.6
BcaB08g35909 Brassica carinata HOM05D003532 ORTHO05D003298 3.9e-277 958.7 1353 41.3
Sc07g0002980 Simmondsia chinensis HOM05D003532 ORTHO05D003298 2.1e-275 953.0 1190 45.2
SGA_v2.0_scaffold171G38893 Striga asiatica HOM05D003532 ORTHO05D003298 8.9e-274 947.6 1364 40.6
A10p12730 Brassica napus HOM05D003532 ORTHO05D003298 1.4e-271 940.3 1352 40.4
BraA10t43365Z Brassica rapa HOM05D003532 ORTHO05D003298 2.0e-270 936.4 1352 40.2
Carub.0008s1589 Capsella rubella HOM05D003532 ORTHO05D003298 2.7e-270 936.0 1134 45.5
Thhalv10012444m.g Eutrema salsugineum HOM05D003532 ORTHO05D003298 7.8e-270 934.5 1188 44.0
Sp6g17430 Schrenkiella parvula HOM05D003532 ORTHO05D003298 1.7e-269 933.3 1321 40.4
C09p46210 Brassica napus HOM05D003532 ORTHO05D003298 6.6e-269 931.4 1183 43.9
BolC9t57486H Brassica oleracea HOM05D003532 ORTHO05D003298 1.1e-268 930.6 1183 43.9
Zm00001eb057430 Zea mays HOM05D003532 ORTHO05D003298 3.2e-263 912.5 1309 41.3
ATR0712G118 Amborella trichopoda HOM05D003532 ORTHO05D003298 3.1e-258 896.0 1386 37.2
Lj1P884T43 Lonicera japonica HOM05D003532 ORTHO05D003298 5.6e-244 848.6 1377 38.3
SHI26496 Sapria himalayana HOM05D003532 ORTHO05D003298 7.6e-241 838.2 1220 39.7
MBI19_g37319_MAGBIO Magnolia biondii HOM05D003532 ORTHO05D003298 1.1e-239 834.3 1176 41.2
Aa31LG3G11480 Aethionema arabicum HOM05D003532 ORTHO05D003298 7.9e-238 828.2 1167 39.8
GSVIVG01037769001 Vitis vinifera HOM05D003532 ORTHO05D003298 6.5e-200 702.2 1330 35.8
Actinidia00098 Actinidia chinensis HOM05D003532 ORTHO05D003298 3.9e-197 693.0 1093 38.9
SalBow8G0547 Salvia bowleyana HOM05D003532 ORTHO05D003298 1.8e-165 587.8 460 65.0
Rhsim06G0226200 Rhododendron simsii HOM05D003532 ORTHO05D003298 1.8e-162 577.8 454 63.2
CAN.G1166.12 Capsicum annuum HOM05D003532 ORTHO05D003298 9.2e-162 575.5 456 62.9
Cpa.g.sc12.202 Carica papaya HOM05D003532 ORTHO05D003298 1.8e-157 561.2 457 60.4
PGSC0003DMG400018160 Solanum tuberosum HOM05D003532 ORTHO05D003298 1.8e-157 561.2 456 61.4
AUR62015940 Chenopodium quinoa HOM05D003532 ORTHO05D003298 4.3e-151 540.0 461 58.1
DCAR_016632 Daucus carota HOM05D003532 ORTHO05D003298 3.0e-144 517.3 466 56.7
EL10Ac4g07624 Beta vulgaris HOM05D003532 ORTHO05D003298 1.1e-143 515.4 431 59.6
Rhsim06G0226300 Rhododendron simsii HOM05D003532 ORTHO05D003298 1.6e-142 511.5 892 36.0
SalBow8G1007 Salvia bowleyana HOM05D003532 ORTHO05D003298 6.2e-142 509.6 892 36.9
CAN.G1166.13 Capsicum annuum HOM05D003532 ORTHO05D003298 3.6e-134 483.8 886 33.7
DCAR_016631 Daucus carota HOM05D003532 ORTHO05D003298 1.8e-133 481.5 883 35.1
Cpa.g.sc12.201 Carica papaya HOM05D003532 ORTHO05D003298 6.9e-133 479.6 821 36.3
CDE04G0250 Ceratophyllum demersum HOM05D003532 ORTHO05D003298 7.3e-127 459.5 695 38.1
arahy.Tifrunner.gnm1.ann1.IRWJ3E Arachis hypogaea HOM05D003532 ORTHO05D003298 6.9e-125 453.0 897 33.8
HPP92_012225 Vanilla planifolia HOM05D003532 ORTHO05D003298 2.2e-123 448.0 424 54.5
AUR62015941 Chenopodium quinoa HOM05D003532 ORTHO05D003298 1.4e-122 445.3 897 32.1
EL10Ac4g07623 Beta vulgaris HOM05D003532 ORTHO05D003298 2.1e-118 431.4 871 32.5
HanXRQChr03g0076991 Helianthus annuus HOM05D003532 ORTHO05D003298 5.7e-95 353.6 507 42.0
AUR62040666 Chenopodium quinoa HOM05D003532 ORTHO05D003298 1.4e-93 349.0 505 40.2
Actinidia04774 Actinidia chinensis HOM05D003532 ORTHO05D003298 4.1e-93 347.4 655 35.3
AUR62040668 Chenopodium quinoa HOM05D003532 ORTHO05D003298 5.9e-92 343.6 296 58.8
FAN08G1566 Fragaria x ananassa HOM05D003532 ORTHO05D003298 4.4e-79 300.8 333 48.6
Actinidia05036 Actinidia chinensis HOM05D003532 ORTHO05D003298 3.3e-71 274.6 364 45.1
MD11G1205600 Malus domestica HOM05D003532 ORTHO05D003298 7.5e-71 273.5 284 51.4
MD11G1205700 Malus domestica HOM05D003532 ORTHO05D003298 2.9e-67 261.5 447 38.5
AagrBONN_evm.TU.Sc2ySwM_362.2762 Anthoceros agrestis HOM05D003532 ORTHO05D003298 5.5e-58 230.7 1382 22.4
FAN08G0438 Fragaria x ananassa HOM05D003532 ORTHO05D003298 3.4e-55 221.5 261 45.6
MD11G1205800 Malus domestica HOM05D003532 ORTHO05D003298 7.8e-52 210.3 172 62.8
FAN06G2976 Fragaria x ananassa HOM05D003532 ORTHO05D003298 3.8e-51 208.0 406 34.5
AUR62040669 Chenopodium quinoa HOM05D003532 ORTHO05D003298 2.2e-46 192.2 152 61.8
AagrBONN_evm.TU.Sc2ySwM_368.1056 Anthoceros agrestis HOM05D003532 ORTHO05D003298 2.4e-45 188.7 1301 21.1
Pp3c10_20720 Physcomitrium patens HOM05D003532 ORTHO05D003298 2.7e-44 185.3 1157 21.5
Pp3c3_24130 Physcomitrium patens HOM05D003532 ORTHO05D003298 1.0e-43 183.3 1189 21.7
AUR62040667 Chenopodium quinoa HOM05D003532 ORTHO05D003298 9.5e-42 176.8 222 40.5
FAN03G0604 Fragaria x ananassa HOM05D003532 ORTHO05D003298 1.7e-30 139.4 132 52.3
CBR_g38599 Chara braunii HOM05D003532 ORTHO05D003298 1.1e-26 126.7 671 22.1
FAN21G1792 Fragaria x ananassa HOM05D003532 ORTHO05D003298 1.1e-24 120.2 152 42.1
Mapoly0046s0036 Marchantia polymorpha HOM05D003532 ORTHO05D003298 1.8e-24 119.4 705 22.3
AagrBONN_evm.TU.Sc2ySwM_368.330 Anthoceros agrestis HOM05D002844 ORTHO05D003298 2.4e-24 119.0 767 21.9
AagrBONN_evm.TU.Sc2ySwM_344.5368 Anthoceros agrestis HOM05D003532 ORTHO05D003298 1.5e-23 116.3 630 23.0
CBR_g38597 Chara braunii HOM05D003532 ORTHO05D003298 5.4e-21 107.8 675 21.9
AagrBONN_evm.TU.Sc2ySwM_362.1324 Anthoceros agrestis HOM05D002844 ORTHO05D003298 6.0e-20 104.4 610 23.0
AagrBONN_evm.TU.Sc2ySwM_368.264 Anthoceros agrestis HOM05D003532 ORTHO05D003298 1.0e-19 103.6 511 23.7
AagrBONN_evm.TU.Sc2ySwM_368.290 Anthoceros agrestis HOM05D002844 ORTHO05D003298 3.9e-19 101.7 514 23.7
CBR_g12185 Chara braunii HOM05D003532 ORTHO05D003298 3.9e-19 101.7 494 22.5
CBR_g45627 Chara braunii HOM05D003532 ORTHO05D003298 1.5e-18 99.8 791 21.1
AagrBONN_evm.TU.Sc2ySwM_368.274 Anthoceros agrestis HOM05D003532 ORTHO05D003298 4.3e-18 98.2 432 22.9
CBR_g38589 Chara braunii HOM05D003532 ORTHO05D003298 1.2e-17 96.7 470 20.0
CBR_g38594 Chara braunii HOM05D003532 ORTHO05D003298 1.6e-17 96.3 472 22.0
AagrBONN_evm.TU.Sc2ySwM_362.556 Anthoceros agrestis HOM05D003532 ORTHO05D003298 3.1e-16 92.0 381 22.3
AagrBONN_evm.TU.Sc2ySwM_228.5542 Anthoceros agrestis HOM05D002844 ORTHO05D010627 6.9e-16 90.9 786 20.4
CBR_g46414 Chara braunii HOM05D003532 ORTHO05D003298 1.5e-15 89.7 763 20.7
Mapoly0002s0170 Marchantia polymorpha HOM05D003532 ORTHO05D003298 2.9e-14 85.5 672 19.5
CBR_g40961 Chara braunii HOM05D003532 ORTHO05D000353 4.9e-14 84.7 730 20.4
CBR_g12867 Chara braunii HOM05D000019 ORTHO05D003298 1.4e-13 83.2 638 22.1
Lsat_1_v5_gn_9_84580 Lactuca sativa HOM05D000039 ORTHO05D000370 1.9e-13 82.8 77 50.6
AagrBONN_evm.TU.Sc2ySwM_344.5183 Anthoceros agrestis HOM05D008597 ORTHO05D010900 7.1e-13 80.9 125 39.2
AagrBONN_evm.TU.Sc2ySwM_368.236 Anthoceros agrestis HOM05D003532 ORTHO05D015853 1.2e-12 80.1 236 29.7
CBR_g12182 Chara braunii HOM05D003532 ORTHO05D003298 2.1e-12 79.3 449 18.9
CBR_g12864 Chara braunii HOM05D003532 ORTHO05D003298 2.7e-12 79.0 482 24.1
PGSC0003DMG400018206 Solanum tuberosum HOM05D003532 ORTHO05D003298 3.5e-12 78.6 64 48.4
AagrBONN_evm.TU.Sc2ySwM_117.4062 Anthoceros agrestis HOM05D003532 ORTHO05D015853 1.3e-11 76.6 245 29.4
AagrBONN_evm.TU.Sc2ySwM_362.460 Anthoceros agrestis HOM05D002844 ORTHO05D003298 1.9e-10 72.8 395 20.5
Lsat_1_v5_gn_3_17020 Lactuca sativa HOM05D003532 ORTHO05D003298 2.5e-10 72.4 76 48.7
CBR_g46001 Chara braunii HOM05D003532 ORTHO05D003298 3.3e-10 72.0 448 21.7
CBR_g40030 Chara braunii HOM05D007859 ORTHO05D003298 4.3e-10 71.6 390 21.8
Mapoly0182s0017 Marchantia polymorpha HOM05D003532 ORTHO05D003298 4.3e-10 71.6 487 21.8
AagrBONN_evm.TU.Sc2ySwM_117.3772 Anthoceros agrestis HOM05D002844 ORTHO05D003298 1.3e-09 70.1 440 21.6
AagrBONN_evm.TU.Sc2ySwM_228.5546 Anthoceros agrestis HOM05D002844 ORTHO05D003298 1.3e-09 70.1 435 21.4
CBR_g85241 Chara braunii HOM05D003532 ORTHO05D003298 1.3e-09 70.1 273 23.4
AagrBONN_evm.TU.Sc2ySwM_344.1379 Anthoceros agrestis HOM05D003532 ORTHO05D015853 3.6e-09 68.6 189 28.0
AagrBONN_evm.TU.Sc2ySwM_368.391 Anthoceros agrestis HOM05D002844 ORTHO05D015853 3.6e-09 68.6 242 28.5
CBR_g38576 Chara braunii HOM05D003532 ORTHO05D003298 3.6e-09 68.6 518 20.1
AagrBONN_evm.TU.Sc2ySwM_340.687 Anthoceros agrestis HOM05D008597 ORTHO05D010900 1.1e-08 67.0 184 28.3
AagrBONN_evm.TU.Sc2ySwM_368.2566 Anthoceros agrestis HOM05D008597 ORTHO05D010900 3.1e-08 65.5 236 26.7
CBR_g57789 Chara braunii HOM05D003532 ORTHO05D003298 5.3e-08 64.7 792 20.5
AagrBONN_evm.TU.Sc2ySwM_228.82 Anthoceros agrestis HOM05D002844 ORTHO05D070139 6.9e-08 64.3 476 20.6
AagrBONN_evm.TU.Sc2ySwM_340.455 Anthoceros agrestis HOM05D002844 ORTHO05D003298 9.0e-08 63.9 465 22.8
Medtr6g090540 Medicago truncatula HOM05D003532 ORTHO05D003298 1.2e-07 63.5 107 36.4
AagrBONN_evm.TU.Sc2ySwM_344.5135 Anthoceros agrestis HOM05D008597 ORTHO05D010900 1.5e-07 63.2 129 32.6
PGSC0003DMG401018159 Solanum tuberosum HOM05D003532 ORTHO05D003298 2.6e-07 62.4 58 53.4
AagrBONN_evm.TU.Sc2ySwM_117.2267 Anthoceros agrestis HOM05D002844 ORTHO05D010627 4.5e-07 61.6 400 20.2
CBR_g12862 Chara braunii HOM05D003532 ORTHO05D003298 5.8e-07 61.2 291 24.1
AagrBONN_evm.TU.Sc2ySwM_362.1162 Anthoceros agrestis HOM05D008597 ORTHO05D010900 1.3e-06 60.1 125 29.6
AagrBONN_evm.TU.Sc2ySwM_340.664 Anthoceros agrestis HOM05D008597 ORTHO05D010900 3.8e-06 58.5 184 26.1
AagrBONN_evm.TU.Sc2ySwM_340.760 Anthoceros agrestis HOM05D008597 ORTHO05D003298 3.8e-06 58.5 372 21.8
Mapoly0157s0002 Marchantia polymorpha HOM05D003532 ORTHO05D003298 4.9e-06 58.2 232 24.6
AagrBONN_evm.TU.Sc2ySwM_362.1938 Anthoceros agrestis HOM05D003532 ORTHO05D003298 8.4e-06 57.4 236 26.3


User provided reference genes

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