Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15188 Utricularia gibba HOM05D005081 ORTHO05D005506 2.4e-136 488.8 245 100.0
MSTRG.10457 Avicennia marina HOM05D005081 ORTHO05D005506 5.7e-45 185.3 245 48.2
Migut.L01903 Erythranthe guttata HOM05D005081 ORTHO05D005506 9.8e-45 184.5 253 46.6
PGSC0003DMG400013692 Solanum tuberosum HOM05D005081 ORTHO05D005506 1.7e-44 183.7 252 44.8
Solyc05g046310.3 Solanum lycopersicum HOM05D005081 ORTHO05D005506 8.3e-44 181.4 252 44.8
Sopen00g006190 Solanum pennellii HOM05D005081 ORTHO05D005506 1.4e-43 180.6 250 45.6
MSTRG.26528 Avicennia marina HOM05D005081 ORTHO05D005506 6.6e-41 171.8 248 44.8
Nitab4.5_0010835g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 3.3e-40 169.5 248 42.7
SGA_v2.0_scaffold63G21842 Striga asiatica HOM05D005081 ORTHO05D005506 4.0e-38 162.5 248 41.5
Oeu044689.1 Olea europaea HOM05D005081 ORTHO05D005506 5.2e-38 162.2 244 41.0
Nitab4.5_0011475g0010 Nicotiana tabacum HOM05D005081 ORTHO05D005506 8.9e-38 161.4 251 43.4
Nitab4.5_0000833g0060 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.2e-37 161.0 247 40.1
GSVIVG01035163001 Vitis vinifera HOM05D005081 ORTHO05D005506 3.7e-36 156.0 248 39.5
Rhsim01G0113200 Rhododendron simsii HOM05D005081 ORTHO05D005506 5.4e-35 152.1 249 42.6
Cc00_g16170 Coffea canephora HOM05D005081 ORTHO05D005506 7.0e-35 151.8 244 41.0
AUR62021338 Chenopodium quinoa HOM05D005081 ORTHO05D005506 9.2e-35 151.4 250 42.8
AUR62033253 Chenopodium quinoa HOM05D005081 ORTHO05D005506 2.0e-34 150.2 251 43.8
Hma1.2p1_0022F.1_g014783 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 2.7e-34 149.8 247 41.3
Lsat_1_v5_gn_7_59220 Lactuca sativa HOM05D005081 ORTHO05D005506 3.5e-34 149.4 243 43.6
Cpa.g.sc115.44 Carica papaya HOM05D005081 ORTHO05D005506 4.6e-34 149.1 240 42.5
TAR383G1035 Trochodendron aralioides HOM05D005081 ORTHO05D005506 4.6e-34 149.1 248 40.7
Peaxi162Scf00315g00813 Petunia axillaris HOM05D005081 ORTHO05D005506 1.3e-33 147.5 250 40.0
Actinidia29969 Actinidia chinensis HOM05D005081 ORTHO05D005506 1.7e-33 147.1 241 39.0
TAR625G0352 Trochodendron aralioides HOM05D005081 ORTHO05D005506 2.3e-33 146.7 245 38.4
Oeu008926.1 Olea europaea HOM05D005081 ORTHO05D005506 3.0e-33 146.4 242 39.3
HanXRQChr10g0303491 Helianthus annuus HOM05D005081 ORTHO05D005506 6.6e-33 145.2 237 40.5
Peaxi162Scf00889g00221 Petunia axillaris HOM05D005081 ORTHO05D005506 6.6e-33 145.2 249 40.2
vmacro20793 Vaccinium macrocarpon HOM05D005081 ORTHO05D005506 3.3e-32 142.9 251 38.2
SalBow6G6882 Salvia bowleyana HOM05D005081 ORTHO05D005506 5.6e-32 142.1 239 39.7
Hund26317 Selenicereus undatus HOM05D005081 ORTHO05D005506 9.5e-32 141.4 246 39.8
CsaV3_1G032220 Cucumis sativus L. HOM05D005081 ORTHO05D005506 3.6e-31 139.4 258 38.8
MBI16_g18201_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 6.2e-31 138.7 247 38.5
Nitab4.5_0000053g0180 Nicotiana tabacum HOM05D005081 ORTHO05D005506 1.1e-30 137.9 247 39.3
Manes.15G189400 Manihot esculenta HOM05D005081 ORTHO05D005506 3.1e-30 136.3 246 38.6
Ah.14g083630 Amaranthus hybridus HOM05D005081 ORTHO05D005506 6.8e-30 135.2 240 40.8
CSS0043250 Camellia sinensis var. sinensis HOM05D005081 ORTHO05D005506 6.8e-30 135.2 248 36.3
Eucgr.C02188 Eucalyptus grandis HOM05D005081 ORTHO05D005506 8.9e-30 134.8 262 37.0
MELO3C017390.2 Cucumis melo HOM05D005081 ORTHO05D005506 1.2e-29 134.4 258 38.0
Dinv02618 Davidia involucrata HOM05D005081 ORTHO05D005506 1.2e-29 134.4 200 45.5
PGR044G2548 Punica granatum HOM05D005081 ORTHO05D005506 1.5e-29 134.0 244 41.4
QL11p009451 Quercus lobata HOM05D005081 ORTHO05D005506 1.5e-29 134.0 246 39.4
Sc08g0004640 Simmondsia chinensis HOM05D005081 ORTHO05D005506 4.4e-29 132.5 249 38.2
ClCG06G014000 Citrullus lanatus HOM05D005081 ORTHO05D005506 1.3e-28 131.0 254 39.4
EL10Ac8g18324 Beta vulgaris HOM05D005081 ORTHO05D005506 2.2e-28 130.2 262 38.5
Actinidia38513 Actinidia chinensis HOM05D005081 ORTHO05D005506 6.4e-28 128.6 237 36.7
Hund09052 Selenicereus undatus HOM05D005081 ORTHO05D005506 8.3e-28 128.3 253 35.6
CiPaw.15G154600 Carya illinoinensis HOM05D005081 ORTHO05D005506 1.9e-27 127.1 249 36.5
RcHm_v2.0_Chr4g0398241 Rosa chinensis HOM05D005081 ORTHO05D005506 2.4e-27 126.7 244 37.3
FAN22G0520 Fragaria x ananassa HOM05D005081 ORTHO05D005506 3.2e-27 126.3 239 37.2
Haze_19038 Corylus avellana HOM05D001026 ORTHO05D003027 4.1e-27 125.9 243 37.0
TWI32G0620 Tripterygium wilfordii HOM05D005081 ORTHO05D005506 4.1e-27 125.9 247 36.4
ECA240G1118 Erigeron canadensis HOM05D005081 ORTHO05D005506 2.7e-26 123.2 251 38.6
Atru.chr12.2077 Acer truncatum HOM05D005081 ORTHO05D005506 3.5e-26 122.9 244 36.9
ECA234G2314 Erigeron canadensis HOM05D005081 ORTHO05D005506 3.5e-26 122.9 242 38.0
Sed0028150 Sechium edule HOM05D005081 ORTHO05D005506 4.6e-26 122.5 239 37.7
FAN12G4058 Fragaria x ananassa HOM05D005081 ORTHO05D005506 1.0e-25 121.3 238 35.7
FvH4_4g06450 Fragaria vesca HOM05D005081 ORTHO05D005506 1.3e-25 120.9 238 35.7
Gohir.A05G408500 Gossypium hirsutum HOM05D005081 ORTHO05D005506 1.3e-25 120.9 239 36.4
Ah.09g230120 Amaranthus hybridus HOM05D005081 ORTHO05D005506 3.9e-25 119.4 261 35.2
Potri.018G132600 Populus trichocarpa HOM05D005081 ORTHO05D005506 5.1e-25 119.0 264 37.5
Gohir.D04G006900 Gossypium hirsutum HOM05D005081 ORTHO05D005506 6.6e-25 118.6 239 36.0
FAN07G0684 Fragaria x ananassa HOM05D005081 ORTHO05D005506 8.6e-25 118.2 237 36.3
FAN17G0390 Fragaria x ananassa HOM05D005081 ORTHO05D005506 8.6e-25 118.2 239 36.0
Gorai.012G008600 Gossypium raimondii HOM05D005081 ORTHO05D005506 8.6e-25 118.2 239 36.0
HanXRQChr03g0067191 Helianthus annuus HOM05D005081 ORTHO05D005506 8.6e-25 118.2 247 39.3
Duzib170G0058 Durio zibethinus HOM05D005081 ORTHO05D005506 1.5e-24 117.5 240 36.7
Hma1.2p1_0022F.1_g014780 Hydrangea macrophylla HOM05D005081 ORTHO05D005506 1.9e-24 117.1 239 37.2
CANSAT80G2033 Cannabis sativa HOM05D005081 ORTHO05D005506 2.5e-24 116.7 255 34.9
THA.LOC104808906 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 3.3e-24 116.3 248 34.3
CiPaw.16G103000 Carya illinoinensis HOM05D005081 ORTHO05D005506 5.6e-24 115.5 249 34.5
Cc10_g11560 Coffea canephora HOM05D005081 ORTHO05D005506 5.6e-24 115.5 217 38.7
PSO170G2950 Papaver somniferum HOM05D005081 ORTHO05D005506 1.2e-23 114.4 255 34.9
Sed0020945 Sechium edule HOM05D005081 ORTHO05D005506 1.2e-23 114.4 246 37.4
Aqoxy7G02679 Aquilegia oxysepala HOM05D005081 ORTHO05D005506 2.8e-23 113.2 242 36.8
Carub.0007s3114 Capsella rubella HOM05D005081 ORTHO05D005506 3.6e-23 112.8 259 32.4
CDE02G3184 Ceratophyllum demersum HOM05D005081 ORTHO05D005506 8.1e-23 111.7 201 40.3
PSO063G3463 Papaver somniferum HOM05D005081 ORTHO05D005506 1.1e-22 111.3 256 34.8
Sabra06G0052800 Salix brachista HOM05D005081 ORTHO05D005506 5.2e-22 109.0 270 35.6
Thecc.09G189400 Theobroma cacao HOM05D005081 ORTHO05D005506 6.8e-22 108.6 244 32.4
THA.LOC104826579 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 8.9e-22 108.2 241 33.2
AL7G44130 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.2e-21 107.8 256 32.8
THA.LOC104815319 Tarenaya hassleriana HOM05D005081 ORTHO05D005506 2.0e-21 107.1 249 32.1
Actinidia31880 Actinidia chinensis HOM05D005081 ORTHO05D005506 3.4e-21 106.3 252 34.5
Duzib168G1013 Durio zibethinus HOM05D005081 ORTHO05D005506 4.4e-21 105.9 234 34.6
Aa31LG4G14880 Aethionema arabicum HOM05D005081 ORTHO05D005506 7.6e-21 105.1 249 33.3
AT5G35320 Arabidopsis thaliana HOM05D005081 ORTHO05D005506 7.6e-21 105.1 258 32.6
Lalb_Chr05g0223691 Lupinus albus HOM05D005081 ORTHO05D005506 1.3e-20 104.4 248 33.5
AL3G43930 Arabidopsis lyrata HOM05D005081 ORTHO05D005506 1.7e-20 104.0 231 34.6
Carub.0003s2733 Capsella rubella HOM05D005081 ORTHO05D005506 2.9e-20 103.2 234 34.6
Potri.006G070900 Populus trichocarpa HOM05D005081 ORTHO05D005506 3.8e-20 102.8 272 34.2
MD13G1236100 Malus domestica HOM05D005081 ORTHO05D005506 4.9e-20 102.4 224 33.0
CARHR217350 Cardamine hirsuta HOM05D005081 ORTHO05D005506 1.6e-18 97.4 248 31.5
Thhalv10003466m.g Eutrema salsugineum HOM05D005081 ORTHO05D005506 3.5e-18 96.3 252 32.5
HPP92_017106 Vanilla planifolia HOM05D005081 ORTHO05D005506 3.5e-18 96.3 228 33.8
HPP92_017096 Vanilla planifolia HOM05D005081 ORTHO05D005506 6.0e-18 95.5 228 34.2
Sabra18G0112300 Salix brachista HOM05D005081 ORTHO05D005506 1.0e-17 94.7 248 33.9
Ca_17410_v3 Cicer arietinum L. HOM05D005081 ORTHO05D005506 1.3e-17 94.4 237 32.9
Medtr8g101480 Medicago truncatula HOM05D005081 ORTHO05D005506 1.3e-17 94.4 230 34.3
MBI13_g31561_MAGBIO Magnolia biondii HOM05D005081 ORTHO05D005506 2.3e-17 93.6 222 31.1
DCAR_019825 Daucus carota HOM05D005081 ORTHO05D005506 3.0e-17 93.2 227 38.3
Prupe.1G067800 Prunus persica HOM05D005081 ORTHO05D005506 8.7e-17 91.7 226 30.5
A03p44750 Brassica napus HOM05D005081 ORTHO05D005506 1.9e-16 90.5 246 34.1
Ciclev10012648m.g Citrus clementina HOM05D005081 ORTHO05D005506 1.9e-16 90.5 244 31.1
BraA03t13610Z Brassica rapa HOM05D005081 ORTHO05D005506 3.3e-16 89.7 244 33.6
Os02g0141500 Oryza sativa ssp. japonica HOM05D005081 ORTHO05D005506 4.3e-16 89.4 240 30.8
Sp3g25120 Schrenkiella parvula HOM05D005081 ORTHO05D005506 4.3e-16 89.4 249 30.1
Lj4g0023825 Lotus japonicus HOM05D005081 ORTHO05D005506 1.6e-15 87.4 247 33.6
ATR0626G171 Amborella trichopoda HOM05D005081 ORTHO05D005506 2.8e-15 86.7 252 32.5
TPR.G25464 Trifolium pratense HOM05D005081 ORTHO05D005506 4.4e-13 79.3 262 29.8
Prupe.1G455900 Prunus persica HOM05D005081 ORTHO05D005506 2.9e-12 76.6 232 28.4
Peaxi162Scf00566g00025 Petunia axillaris HOM05D005081 ORTHO05D005506 1.9e-11 73.9 124 34.7
Phvul.002G303500 Phaseolus vulgaris HOM05D005081 ORTHO05D005506 2.4e-11 73.6 246 30.9
BcaB08g34509 Brassica carinata HOM05D005081 ORTHO05D005506 3.2e-11 73.2 251 28.7
Zm00001eb208100 Zea mays HOM05D005081 ORTHO05D005506 3.2e-11 73.2 246 32.9
Peaxi162Scf00083g00112 Petunia axillaris HOM05D005081 ORTHO05D005506 4.2e-11 72.8 128 32.0
Peaxi162Scf00460g00005 Petunia axillaris HOM05D005081 ORTHO05D005506 5.4e-11 72.4 123 33.3
Peaxi162Scf01260g00001 Petunia axillaris HOM05D005081 ORTHO05D005506 5.4e-11 72.4 121 34.7
Duzib168G0721 Durio zibethinus HOM05D005081 ORTHO05D005506 9.3e-11 71.6 240 30.0
Glyma.08G028300 Glycine max HOM05D005081 ORTHO05D005506 9.3e-11 71.6 244 29.5
arahy.Tifrunner.gnm1.ann1.TAK2NC Arachis hypogaea HOM05D005081 ORTHO05D005506 1.2e-10 71.2 249 27.3
VMungo0251G2709 Vigna mungo HOM05D005081 ORTHO05D005506 2.7e-10 70.1 232 28.9
Peaxi162Scf00740g00003 Petunia axillaris HOM05D005081 ORTHO05D005506 6.0e-10 68.9 116 33.6
arahy.Tifrunner.gnm1.ann1.FV9V0P Arachis hypogaea HOM05D005081 ORTHO05D005506 6.6e-09 65.5 191 32.5
Peaxi162Scf00228g00099 Petunia axillaris HOM05D005081 ORTHO05D005506 6.6e-09 65.5 122 34.4
Lalb_Chr11g0064261 Lupinus albus HOM05D005081 ORTHO05D005506 1.9e-08 63.9 231 28.6
FAN20G0355 Fragaria x ananassa HOM05D026897 ORTHO05D005506 3.3e-08 63.2 169 28.4
FvH4_2g36450 Fragaria vesca HOM05D026897 ORTHO05D005506 4.3e-08 62.8 216 27.3
FAN15G2850 Fragaria x ananassa HOM05D026897 ORTHO05D005506 4.3e-08 62.8 215 26.0
Psat7g022000 Pisum sativum HOM05D005081 ORTHO05D005506 4.3e-08 62.8 150 36.0
FAN27G3206 Fragaria x ananassa HOM05D026897 ORTHO05D005506 5.6e-08 62.4 216 27.3
BcaC01g03146 Brassica carinata HOM05D005081 ORTHO05D005506 2.1e-07 60.5 246 24.4
C03p55600 Brassica napus HOM05D005081 ORTHO05D005506 2.1e-07 60.5 246 24.4
BolC3t17837H Brassica oleracea HOM05D005081 ORTHO05D005506 2.1e-07 60.5 246 24.4
Glyma.05G221800 Glycine max HOM05D005081 ORTHO05D005506 3.6e-07 59.7 254 27.6
CARHR103910 Cardamine hirsuta HOM05D005081 ORTHO05D005506 4.8e-07 59.3 58 50.0
Peaxi162Scf00020g00002 Petunia axillaris HOM05D005081 ORTHO05D005506 8.1e-07 58.5 90 34.4
MD16G1241100 Malus domestica HOM05D005081 ORTHO05D005506 1.1e-06 58.2 115 42.6
HPP92_018333 Vanilla planifolia HOM05D005081 ORTHO05D005506 5.3e-06 55.8 98 35.7


User provided reference genes

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