Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 8.2e-33 143.3 80 100.0
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 3.8e-22 107.8 80 68.8
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 7.2e-21 103.6 80 66.2
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 3.9e-19 97.8 80 63.8
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 1.5e-18 95.9 80 63.8
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 3.3e-18 94.7 80 62.5
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 5.7e-18 94.0 78 57.7
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.7e-18 94.0 80 63.8
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.4e-18 93.6 80 63.8
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 9.7e-18 93.2 80 61.2
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 9.7e-18 93.2 80 61.2
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.2e-17 92.0 80 62.5
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.2e-17 92.0 80 62.5
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.2e-17 92.0 80 62.5
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 2.8e-17 91.7 80 58.8
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 2.8e-17 91.7 80 61.2
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 2.8e-17 91.7 81 61.7
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 4.8e-17 90.9 80 60.0
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 4.8e-17 90.9 80 60.0
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 4.8e-17 90.9 80 60.0
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 4.8e-17 90.9 80 60.0
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 6.3e-17 90.5 80 61.2
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 6.3e-17 90.5 80 58.8
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 6.3e-17 90.5 80 61.2
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 6.3e-17 90.5 80 61.2
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 1.4e-16 89.4 80 58.8
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-16 89.4 80 58.8
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 1.4e-16 89.4 80 57.5
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 1.4e-16 89.4 80 58.8
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 1.8e-16 89.0 80 60.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.8e-16 89.0 80 58.8
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 2.4e-16 88.6 80 57.5
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 3.1e-16 88.2 80 55.0
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 3.1e-16 88.2 80 57.5
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 3.1e-16 88.2 80 60.0
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 60.0
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 58.8
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 58.8
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 58.8
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 4.1e-16 87.8 80 57.5
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 5.3e-16 87.4 80 58.8
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 5.3e-16 87.4 80 60.0
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 7.0e-16 87.0 80 56.2
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 7.0e-16 87.0 80 57.5
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 9.1e-16 86.7 80 58.8
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 9.1e-16 86.7 82 57.3
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 9.1e-16 86.7 82 59.8
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 1.2e-15 86.3 80 62.5
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 1.6e-15 85.9 80 56.2
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 2.0e-15 85.5 80 57.5
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 2.0e-15 85.5 79 60.8
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 2.0e-15 85.5 80 56.2
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 2.6e-15 85.1 80 53.8
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 2.6e-15 85.1 80 61.2
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.6e-15 85.1 70 62.9
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 3.5e-15 84.7 78 56.4
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 3.5e-15 84.7 80 57.5
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 5.9e-15 84.0 80 56.2
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 5.9e-15 84.0 80 55.0
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 5.9e-15 84.0 80 57.5
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 7.7e-15 83.6 47 74.5
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 7.7e-15 83.6 80 56.2
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 7.7e-15 83.6 80 55.0
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 7.7e-15 83.6 70 61.4
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 7.7e-15 83.6 80 53.8
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 7.7e-15 83.6 80 53.8
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 1.3e-14 82.8 47 74.5
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 1.3e-14 82.8 81 58.0
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 1.3e-14 82.8 80 53.8
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 2.2e-14 82.0 45 80.0
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 2.2e-14 82.0 80 55.0
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 2.9e-14 81.6 81 55.6
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 2.9e-14 81.6 47 78.7
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 2.9e-14 81.6 80 57.5
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 3.8e-14 81.3 81 55.6
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 3.8e-14 81.3 50 68.0
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 3.8e-14 81.3 80 56.2
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 5.0e-14 80.9 45 80.0
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 6.5e-14 80.5 51 72.5
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 6.5e-14 80.5 51 72.5
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 6.5e-14 80.5 79 54.4
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 75.6
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 80.0
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 80.0
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 80.0
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 80.0
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 80.0
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 80.0
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 80.0
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 80.0
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 8.5e-14 80.1 45 80.0
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 8.5e-14 80.1 80 62.5
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 8.5e-14 80.1 72 54.2
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 1.1e-13 79.7 78 55.1
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.5e-13 79.3 78 50.0
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.5e-13 79.3 80 55.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.5e-13 79.3 81 53.1
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 2.5e-13 78.6 48 70.8
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 2.5e-13 78.6 44 77.3
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 2.5e-13 78.6 80 53.8
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 2.5e-13 78.6 78 53.8
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 2.5e-13 78.6 45 80.0
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 3.2e-13 78.2 80 55.0
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 4.2e-13 77.8 79 53.2
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 4.2e-13 77.8 45 77.8
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 4.2e-13 77.8 78 53.8
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 5.5e-13 77.4 75 56.0
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.5e-13 77.4 80 52.5
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 5.5e-13 77.4 67 52.2
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 5.5e-13 77.4 50 66.0
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 5.5e-13 77.4 44 77.3
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 7.2e-13 77.0 47 72.3
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 7.2e-13 77.0 79 54.4
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 7.2e-13 77.0 47 70.2
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 7.2e-13 77.0 78 52.6
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 9.4e-13 76.6 44 77.3
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 1.2e-12 76.3 82 52.4
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.2e-12 76.3 80 61.2
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 1.2e-12 76.3 80 51.2
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.2e-12 76.3 81 60.5
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 2.1e-12 75.5 46 67.4
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 2.1e-12 75.5 78 47.4
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.1e-12 75.5 72 52.8
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 2.1e-12 75.5 47 68.1
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 3.6e-12 74.7 80 50.0
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 3.6e-12 74.7 70 48.6
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 4.7e-12 74.3 79 51.9
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 4.7e-12 74.3 44 72.7
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 4.7e-12 74.3 49 59.2
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 6.1e-12 73.9 50 62.0
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 6.1e-12 73.9 50 70.0
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 1.0e-11 73.2 81 56.8
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 1.0e-11 73.2 81 56.8
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 1.0e-11 73.2 81 56.8
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 1.0e-11 73.2 81 56.8
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 1.0e-11 73.2 80 56.2
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 1.0e-11 73.2 81 56.8
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 1.4e-11 72.8 81 55.6
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 1.8e-11 72.4 79 54.4
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 3.0e-11 71.6 68 54.4
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 6.7e-11 70.5 72 44.4
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 2.6e-10 68.6 49 63.3
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 4.4e-10 67.8 47 57.4
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 2.2e-09 65.5 63 58.7
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 3.1e-08 61.6 70 48.6
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 4.1e-08 61.2 71 46.5
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 4.1e-08 61.2 70 47.1
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.5e-07 57.8 35 68.6
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 7.7e-07 57.0 58 53.4
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 1.0e-06 56.6 61 52.5


User provided reference genes

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