Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g15019 Utricularia gibba HOM05D005051 ORTHO05D005945 4.6e-266 920.6 450 100.0
MSTRG.18843 Avicennia marina HOM05D005051 ORTHO05D005945 1.3e-172 610.1 425 68.2
Migut.D02493 Erythranthe guttata HOM05D005051 ORTHO05D005945 5.2e-169 598.2 427 67.7
SalBow6G3716 Salvia bowleyana HOM05D005051 ORTHO05D005945 4.4e-168 595.1 424 67.5
SGA_v2.0_scaffold171G38944 Striga asiatica HOM05D005051 ORTHO05D005945 6.4e-159 564.7 420 65.0
Dinv19188 Davidia involucrata HOM05D005051 ORTHO05D005945 3.8e-151 538.9 434 60.1
Haze_24821 Corylus avellana HOM05D005051 ORTHO05D005945 1.6e-149 533.5 430 60.0
Cfa002585 Carpinus fangiana HOM05D005051 ORTHO05D005945 2.7e-149 532.7 430 60.2
Actinidia30063 Actinidia chinensis HOM05D005051 ORTHO05D005945 4.6e-149 531.9 433 60.3
vmacro02772 Vaccinium macrocarpon HOM05D005051 ORTHO05D005945 1.3e-148 530.4 433 61.0
ECA236G0910 Erigeron canadensis HOM05D005051 ORTHO05D005945 1.7e-148 530.0 432 60.2
Lj2A1128T45 Lonicera japonica HOM05D005051 ORTHO05D005945 3.9e-148 528.9 427 61.1
PGSC0003DMG400023098 Solanum tuberosum HOM05D005051 ORTHO05D005945 3.3e-147 525.8 430 60.0
CiPaw.03G147700 Carya illinoinensis HOM05D005051 ORTHO05D005945 1.3e-146 523.9 429 59.2
Peaxi162Scf00398g00089 Petunia axillaris HOM05D005051 ORTHO05D005945 2.1e-146 523.1 431 60.1
Solyc09g059960.3 Solanum lycopersicum HOM05D005051 ORTHO05D005945 6.2e-146 521.5 433 59.8
Sopen09g023140 Solanum pennellii HOM05D005051 ORTHO05D005945 6.2e-146 521.5 438 59.4
Lsat_1_v5_gn_8_89520 Lactuca sativa HOM05D005051 ORTHO05D005945 8.1e-146 521.2 423 59.6
QL09p053053 Quercus lobata HOM05D005051 ORTHO05D005945 8.1e-146 521.2 429 58.3
CSS0047345 Camellia sinensis var. sinensis HOM05D005051 ORTHO05D005945 1.4e-145 520.4 433 60.0
CAN.G3.1 Capsicum annuum HOM05D005051 ORTHO05D005945 4.0e-145 518.8 436 58.9
Cc01_g16860 Coffea canephora HOM05D005051 ORTHO05D005945 9.0e-145 517.7 437 59.0
MD13G1217900 Malus domestica HOM05D005051 ORTHO05D005945 9.0e-145 517.7 424 59.2
Cpa.g.sc8.135 Carica papaya HOM05D005051 ORTHO05D005945 1.5e-144 516.9 429 58.7
RcHm_v2.0_Chr6g0284351 Rosa chinensis HOM05D005051 ORTHO05D005945 1.5e-144 516.9 429 58.5
Manes.13G046400 Manihot esculenta HOM05D005051 ORTHO05D005945 2.6e-144 516.2 426 60.3
Sabra14G0142400 Salix brachista HOM05D005051 ORTHO05D005945 1.3e-143 513.8 426 59.6
QL09p052190 Quercus lobata HOM05D005051 ORTHO05D005945 1.7e-143 513.5 429 57.6
TWI36G0473 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 4.9e-143 511.9 429 59.4
FAN27G0551 Fragaria x ananassa HOM05D005051 ORTHO05D005945 1.4e-142 510.4 429 57.8
Duzib138G1384 Durio zibethinus HOM05D005051 ORTHO05D005945 1.9e-142 510.0 430 57.9
FvH4_2g18730 Fragaria vesca HOM05D005051 ORTHO05D005945 1.9e-142 510.0 429 57.3
Oeu018495.2 Olea europaea HOM05D005051 ORTHO05D005945 1.9e-142 510.0 430 58.6
Atru.chr6.1506 Acer truncatum HOM05D005051 ORTHO05D005945 4.2e-142 508.8 432 57.9
FAN24G2416 Fragaria x ananassa HOM05D005051 ORTHO05D005945 4.2e-142 508.8 429 57.1
Potri.014G190600 Populus trichocarpa HOM05D005051 ORTHO05D005945 5.4e-142 508.4 424 59.7
TAR365G1079 Trochodendron aralioides HOM05D005051 ORTHO05D005945 5.4e-142 508.4 434 57.6
HanXRQChr04g0108251 Helianthus annuus HOM05D005051 ORTHO05D005945 1.6e-141 506.9 428 57.7
Eucgr.E03305 Eucalyptus grandis HOM05D005051 ORTHO05D005945 2.1e-141 506.5 430 57.9
Oeu035785.1 Olea europaea HOM05D005051 ORTHO05D005945 2.7e-141 506.1 421 59.4
AUR62008933 Chenopodium quinoa HOM05D005051 ORTHO05D005945 3.5e-141 505.8 428 56.5
PGR083G2429 Punica granatum HOM05D005051 ORTHO05D005945 3.5e-141 505.8 429 58.5
Duzib211G0096 Durio zibethinus HOM05D005051 ORTHO05D005945 4.6e-141 505.4 430 57.9
Gohir.A07G158000 Gossypium hirsutum HOM05D005051 ORTHO05D005945 4.6e-141 505.4 424 57.8
Lalb_Chr13g0291091 Lupinus albus HOM05D005051 ORTHO05D005945 4.6e-141 505.4 432 58.6
DCAR_012658 Daucus carota HOM05D005051 ORTHO05D005945 6.0e-141 505.0 430 57.2
FAN15G1450 Fragaria x ananassa HOM05D005051 ORTHO05D005945 6.0e-141 505.0 421 58.0
Psat4g199920 Pisum sativum HOM05D005051 ORTHO05D005945 6.0e-141 505.0 428 57.2
Gohir.D07G164100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 1.8e-140 503.4 430 57.0
AUR62001109 Chenopodium quinoa HOM05D005051 ORTHO05D005945 2.3e-140 503.1 428 56.3
Medtr8g013045 Medicago truncatula HOM05D005051 ORTHO05D005945 2.3e-140 503.1 429 57.1
Gorai.001G188000 Gossypium raimondii HOM05D005051 ORTHO05D005945 3.9e-140 502.3 430 56.7
TPR.G17135 Trifolium pratense HOM05D005051 ORTHO05D005945 5.1e-140 501.9 429 56.6
Sc17g0002210 Simmondsia chinensis HOM05D005051 ORTHO05D005945 6.7e-140 501.5 430 57.0
Thecc.01G222800 Theobroma cacao HOM05D005051 ORTHO05D005945 6.7e-140 501.5 433 57.3
Prupe.8G200800 Prunus persica HOM05D005051 ORTHO05D005945 8.7e-140 501.1 421 57.5
PSO384G3368 Papaver somniferum HOM05D005051 ORTHO05D005945 1.5e-139 500.4 439 56.3
ClCG09G008890 Citrullus lanatus HOM05D005051 ORTHO05D005945 1.9e-139 500.0 430 57.0
Nitab4.5_0000045g0340 Nicotiana tabacum HOM05D005051 ORTHO05D005945 1.9e-139 500.0 431 58.9
Gohir.A11G139100 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.5e-139 499.6 429 55.7
COL.COLO4_15648 Corchorus olitorius HOM05D005051 ORTHO05D005945 3.3e-139 499.2 430 56.5
Nn2g14125 Nelumbo nucifera HOM05D005051 ORTHO05D005945 3.3e-139 499.2 432 56.7
EL10Ac7g17867 Beta vulgaris HOM05D005051 ORTHO05D005945 2.8e-138 496.1 428 55.1
arahy.Tifrunner.gnm1.ann1.SK15G6 Arachis hypogaea HOM05D005051 ORTHO05D005945 3.7e-138 495.7 428 55.1
arahy.Tifrunner.gnm1.ann1.8DP3DE Arachis hypogaea HOM05D005051 ORTHO05D005945 4.8e-138 495.4 428 55.1
PSO339G3208 Papaver somniferum HOM05D005051 ORTHO05D005945 4.8e-138 495.4 439 56.0
Phvul.010G020500 Phaseolus vulgaris HOM05D005051 ORTHO05D005945 1.1e-137 494.2 427 56.9
MELO3C021052.2 Cucumis melo HOM05D005051 ORTHO05D005945 3.1e-137 492.7 430 57.0
Ciclev10019161m.g Citrus clementina HOM05D005051 ORTHO05D005945 1.2e-136 490.7 429 56.2
Ca_23236_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.4e-136 489.2 429 56.2
Lj3g0013392 Lotus japonicus HOM05D005051 ORTHO05D005945 7.6e-136 488.0 428 55.1
THA.LOC104818965 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 7.6e-136 488.0 417 58.3
MD16G1223000 Malus domestica HOM05D005051 ORTHO05D005945 1.3e-135 487.3 415 56.6
Glyma.03G064400 Glycine max HOM05D005051 ORTHO05D005945 1.7e-135 486.9 427 56.4
CsaV3_7G026000 Cucumis sativus L. HOM05D005051 ORTHO05D005945 2.9e-135 486.1 430 55.6
Sed0004391 Sechium edule HOM05D005051 ORTHO05D005945 2.9e-135 486.1 429 55.5
Ah.02g115620 Amaranthus hybridus HOM05D005051 ORTHO05D005945 3.8e-135 485.7 429 55.0
THA.LOC104802665 Tarenaya hassleriana HOM05D005051 ORTHO05D005945 4.9e-135 485.3 417 58.0
VMungo1309G1922 Vigna mungo HOM05D005051 ORTHO05D005945 6.4e-135 485.0 427 56.0
Glyma.16G101100 Glycine max HOM05D005051 ORTHO05D005945 1.9e-134 483.4 429 55.9
Carub.0003s0666 Capsella rubella HOM05D005051 ORTHO05D005945 1.2e-133 480.7 417 56.1
Sed0023522 Sechium edule HOM05D005051 ORTHO05D005945 1.2e-133 480.7 429 54.8
AL3G18390 Arabidopsis lyrata HOM05D005051 ORTHO05D005945 2.1e-133 479.9 420 56.0
AT3G07140 Arabidopsis thaliana HOM05D005051 ORTHO05D005945 1.8e-132 476.9 420 55.5
CARHR081740 Cardamine hirsuta HOM05D005051 ORTHO05D005945 1.8e-132 476.9 421 56.8
BraA05t22834Z Brassica rapa HOM05D005051 ORTHO05D005945 2.3e-132 476.5 418 56.7
GSVIVG01011065001 Vitis vinifera HOM05D005051 ORTHO05D005945 2.3e-132 476.5 428 56.5
BcaC05g29752 Brassica carinata HOM05D005051 ORTHO05D005945 3.0e-132 476.1 417 56.6
A05p41070 Brassica napus HOM05D005051 ORTHO05D005945 3.0e-132 476.1 418 56.5
Aa31LG5G17700 Aethionema arabicum HOM05D005051 ORTHO05D005945 8.7e-132 474.6 417 56.8
Gohir.D11G145300 Gossypium hirsutum HOM05D005051 ORTHO05D005945 2.5e-131 473.0 433 53.8
Hund18405 Selenicereus undatus HOM05D005051 ORTHO05D005945 4.3e-131 472.2 424 55.7
ATR0564G162 Amborella trichopoda HOM05D005051 ORTHO05D005945 5.6e-131 471.9 442 53.2
Thhalv10020265m.g Eutrema salsugineum HOM05D005051 ORTHO05D005945 9.6e-131 471.1 417 54.7
BolC5t34674H Brassica oleracea HOM05D005051 ORTHO05D005945 1.6e-130 470.3 418 56.2
BcaC05g29842 Brassica carinata HOM05D005051 ORTHO05D005945 1.1e-129 467.6 418 56.0
C05p60240 Brassica napus HOM05D005051 ORTHO05D005945 1.1e-129 467.6 418 55.7
CDE05G0682 Ceratophyllum demersum HOM05D005051 ORTHO05D005945 5.8e-128 461.8 426 53.8
Zm00001eb269850 Zea mays HOM05D005051 ORTHO05D005945 2.9e-127 459.5 422 53.8
Medtr8g013050 Medicago truncatula HOM05D005051 ORTHO05D005945 3.8e-127 459.1 430 53.5
Aqoxy4G00040 Aquilegia oxysepala HOM05D005051 ORTHO05D005945 1.9e-126 456.8 423 53.7
SHI23570 Sapria himalayana HOM05D005051 ORTHO05D005945 1.2e-125 454.1 425 52.5
SEGI_10192 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 3.9e-124 449.1 463 49.7
SEGI_29510 Sequoiadendron giganteum HOM05D005051 ORTHO05D005945 8.5e-119 431.4 454 48.9
Mapoly0173s0012 Marchantia polymorpha HOM05D005051 ORTHO05D005945 2.2e-114 416.8 453 47.5
Gorai.007G155800 Gossypium raimondii HOM05D005051 ORTHO05D005945 2.0e-107 393.7 395 50.6
SMO259G0038 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.7e-101 373.2 424 46.5
Sp2g19120 Schrenkiella parvula HOM05D005051 ORTHO05D005945 4.8e-90 335.9 417 45.6
Actinidia31469 Actinidia chinensis HOM05D005051 ORTHO05D005945 3.1e-89 333.2 448 42.2
Sp3g06080 Schrenkiella parvula HOM05D005051 ORTHO05D005945 2.9e-87 326.6 328 50.9
Pp3c21_19350 Physcomitrium patens HOM05D005051 ORTHO05D005945 3.8e-87 326.2 465 38.7
QL09p053462 Quercus lobata HOM05D005051 ORTHO05D005945 7.2e-86 322.0 393 44.0
CBR_g44939 Chara braunii HOM05D005051 ORTHO05D005945 4.2e-78 296.2 607 32.0
AagrBONN_evm.TU.Sc2ySwM_368.938 Anthoceros agrestis HOM05D005051 ORTHO05D005945 8.9e-68 261.9 410 36.3
COL.COLO4_36899 Corchorus olitorius HOM05D005051 ORTHO05D005945 2.5e-62 243.8 145 72.4
Ca_23237_v3 Cicer arietinum L. HOM05D005051 ORTHO05D005945 3.9e-55 219.9 240 48.3
QL09p048654 Quercus lobata HOM05D005051 ORTHO05D005945 1.1e-49 201.8 243 44.9
TWI18G1080 Tripterygium wilfordii HOM05D005051 ORTHO05D005945 1.1e-49 201.8 226 48.7
SMO259G0024 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.0e-47 195.3 373 37.5
SMO259G0021 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 2.1e-45 187.6 295 40.7
Glyma.13G196100 Glycine max HOM05D005051 ORTHO05D005945 1.2e-43 181.8 186 50.0
MCO05G006 Micromonas commoda HOM05D005051 ORTHO05D005945 6.4e-42 176.0 443 31.6
SMO174G0204 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.3e-34 151.8 283 36.4
PRCOL_00003451 Prasinoderma coloniale HOM05D002267 ORTHO05D005902 1.4e-33 148.3 472 28.0
Cfa025345 Carpinus fangiana HOM05D005051 ORTHO05D005945 5.4e-33 146.4 470 26.4
Os11g0479232 Oryza sativa ssp. japonica HOM05D005051 ORTHO05D005945 2.7e-32 144.1 120 59.2
TPR.G17133 Trifolium pratense HOM05D005051 ORTHO05D005945 6.0e-32 142.9 145 48.3
Medtr6g061260 Medicago truncatula HOM05D005051 ORTHO05D005945 8.1e-29 132.5 140 52.1
SMO108G0003 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 1.1e-28 132.1 221 37.6
SMO108G0001 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.1e-28 130.6 221 37.1
SMO108G0002 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.1e-28 130.6 221 37.1
SMO108G0004 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.1e-28 130.6 221 37.1
SMO108G0005 Selaginella moellendorffii HOM05D005051 ORTHO05D005945 3.1e-28 130.6 221 37.1
Cre10.g441100 Chlamydomonas reinhardtii HOM05D005051 ORTHO05D005945 1.9e-25 121.3 527 26.6
Glyma.13G182400 Glycine max HOM05D005051 ORTHO05D005945 2.4e-25 120.9 114 50.9
SMO259G0051 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 3.0e-23 114.0 186 39.2
SMO259G0015 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 5.1e-23 113.2 186 39.2
SMO313G0001 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 6.7e-23 112.8 186 38.7
SMO259G0055 Selaginella moellendorffii HOM05D012679 ORTHO05D005945 1.9e-22 111.3 169 41.4
Sed0011580 Sechium edule HOM05D005051 ORTHO05D005945 1.8e-20 104.8 246 32.1
Glyma.13G258850 Glycine max HOM05D005051 ORTHO05D005945 1.0e-18 99.0 164 40.2
Glyma.13G368132 Glycine max HOM05D005051 ORTHO05D005945 1.6e-13 81.6 114 42.1
Zm00001eb184180 Zea mays HOM05D005051 ORTHO05D005945 1.1e-09 68.9 40 70.0
Glyma.13G059866 Glycine max HOM05D005051 ORTHO05D005945 3.2e-09 67.4 43 67.4
Medtr6g061110 Medicago truncatula HOM05D005051 ORTHO05D000004 1.8e-07 61.6 40 65.0


User provided reference genes

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