Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 3.5e-135 485.0 243 100.0
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.8e-78 296.6 245 62.4
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 3.3e-77 292.4 245 62.0
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 2.8e-76 289.3 246 59.8
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 8.4e-73 277.7 246 58.9
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 7.1e-72 274.6 245 58.0
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 3.5e-71 272.3 244 57.4
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 7.9e-71 271.2 247 57.9
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 1.8e-70 270.0 245 58.0
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 3.0e-70 269.2 245 57.6
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 3.0e-70 269.2 244 57.0
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 8.7e-70 267.7 245 58.4
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 1.1e-69 267.3 245 57.6
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 2.5e-69 266.2 240 55.0
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 5.7e-69 265.0 245 56.3
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 7.4e-69 264.6 245 58.4
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 7.4e-69 264.6 245 57.6
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 1.3e-68 263.8 245 58.0
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 1.3e-68 263.8 244 55.3
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.3e-68 263.8 245 57.1
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 1.3e-68 263.8 245 56.7
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 6.3e-68 261.5 247 58.7
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 8.2e-68 261.2 244 54.9
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 1.4e-67 260.4 247 55.5
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 1.4e-67 260.4 245 55.5
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.8e-67 260.0 235 58.3
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 1.8e-67 260.0 247 55.5
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 2.4e-67 259.6 245 58.0
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 3.1e-67 259.2 245 55.1
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 4.1e-67 258.8 246 56.1
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 5.3e-67 258.5 245 54.7
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 5.3e-67 258.5 245 56.7
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 5.3e-67 258.5 247 54.7
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 6.9e-67 258.1 243 57.2
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 9.0e-67 257.7 253 56.5
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.2e-66 257.3 245 55.9
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 4.5e-66 255.4 245 55.9
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 1.7e-65 253.4 248 54.4
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 1.7e-65 253.4 248 54.4
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 1.7e-65 253.4 248 56.5
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 1.7e-65 253.4 240 55.4
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 2.2e-65 253.1 240 55.8
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 5.0e-65 251.9 250 52.4
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 8.5e-65 251.1 246 54.9
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 1.4e-64 250.4 245 53.5
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 1.4e-64 250.4 244 55.3
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 1.9e-64 250.0 245 53.9
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.2e-64 249.2 245 54.7
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 4.2e-64 248.8 247 51.8
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.2e-63 247.3 245 54.3
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 2.1e-63 246.5 245 52.2
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 2.7e-63 246.1 232 53.9
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 3.6e-63 245.7 242 54.1
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 4.6e-63 245.4 251 54.2
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 7.9e-63 244.6 243 52.7
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 1.0e-62 244.2 245 50.6
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.4e-62 243.8 245 50.6
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 3.0e-62 242.7 245 52.7
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 3.9e-62 242.3 246 52.0
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 3.9e-62 242.3 245 50.6
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 3.9e-62 242.3 245 50.6
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 6.7e-62 241.5 245 50.2
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 1.1e-61 240.7 247 51.4
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 1.5e-61 240.4 247 50.6
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 3.3e-61 239.2 232 54.7
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 4.3e-61 238.8 245 50.2
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 4.3e-61 238.8 242 50.4
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 5.7e-61 238.4 245 50.2
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 5.7e-61 238.4 245 49.4
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 5.7e-61 238.4 245 49.4
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 7.4e-61 238.0 245 49.4
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.3e-60 237.3 242 50.4
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 2.8e-60 236.1 245 50.2
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 2.8e-60 236.1 245 50.2
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 2.8e-60 236.1 250 51.6
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 3.7e-60 235.7 245 49.0
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.7e-60 235.7 232 50.9
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.1e-59 234.2 234 51.3
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 1.8e-59 233.4 224 54.5
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 5.3e-59 231.9 234 50.9
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 6.9e-59 231.5 243 49.8
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-58 230.3 232 53.0
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 2.0e-58 229.9 224 54.5
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 5.9e-58 228.4 245 51.0
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 2.9e-57 226.1 244 50.0
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 2.9e-57 226.1 244 50.0
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 2.9e-57 226.1 244 51.2
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 8.8e-54 214.5 245 48.2
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 1.1e-53 214.2 231 52.4
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 7.4e-53 211.5 247 47.0
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 1.7e-52 210.3 213 54.9
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 2.4e-51 206.5 248 46.0
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.1e-51 205.7 241 50.2
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 5.3e-51 205.3 220 52.3
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 7.7e-50 201.4 265 42.6
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 1.1e-48 197.6 208 52.9
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 9.4e-48 194.5 243 47.3
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.0e-45 186.8 213 47.9
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.2e-44 181.4 208 48.1
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 1.8e-43 180.3 194 50.5
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 2.0e-42 176.8 121 69.4
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.2e-41 173.3 144 58.3
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 3.8e-41 172.6 187 52.9
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 7.0e-35 151.8 206 44.7
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-34 149.8 193 45.1
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 8.3e-28 128.3 238 31.5
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.3e-24 116.3 152 46.1
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 5.7e-21 105.5 145 42.8
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.9e-20 102.4 81 58.0
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 8.3e-20 101.7 96 56.2
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.2e-18 97.8 96 54.2
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.6e-18 97.4 260 31.5
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 4.5e-18 95.9 75 57.3
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 5.9e-18 95.5 152 42.1
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 2.3e-17 93.6 84 58.3
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.6e-17 92.0 70 64.3
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.9e-16 90.5 142 42.3
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 9.5e-16 88.2 82 52.4
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 6.1e-15 85.5 84 53.6
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.0e-14 84.7 70 55.7
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.7e-12 77.4 130 37.7
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 6.0e-10 68.9 66 51.5
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 7.8e-10 68.6 58 56.9
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 3.0e-09 66.6 54 57.4
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.9e-08 63.9 148 35.1
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 6.2e-07 58.9 49 49.0
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 6.2e-07 58.9 49 49.0
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.8e-06 57.4 121 33.9
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 5.2e-06 55.8 49 46.9
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 5.2e-06 55.8 49 46.9
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 6.8e-06 55.5 120 33.3
ECA240G4443 Erigeron canadensis HOM05D000331 ORTHO05D006501 8.9e-06 55.1 55 52.7


User provided reference genes

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