Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.6e-58 229.2 116 100.0
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 5.1e-44 181.0 136 70.6
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 8.8e-44 180.3 136 69.9
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 2.5e-43 178.7 136 69.1
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 2.5e-43 178.7 136 69.9
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 4.3e-43 177.9 138 68.8
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 4.3e-43 177.9 138 68.8
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 7.4e-43 177.2 116 78.4
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 9.7e-43 176.8 138 68.1
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.7e-42 176.0 136 66.9
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 6.3e-42 174.1 137 67.2
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 8.2e-42 173.7 136 68.4
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.8e-41 172.6 136 67.6
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.4e-41 172.2 136 69.1
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.1e-41 171.4 136 67.6
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 5.3e-41 171.0 136 66.9
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 6.9e-41 170.6 116 74.1
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 6.9e-41 170.6 116 74.1
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.0e-40 169.1 136 66.9
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 2.0e-40 169.1 127 68.5
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 4.5e-40 167.9 120 74.2
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 5.9e-40 167.5 137 65.0
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 5.9e-40 167.5 136 66.2
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.0e-39 166.8 136 66.2
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.3e-39 166.4 136 66.2
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 1.3e-39 166.4 136 64.7
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 1.7e-39 166.0 136 64.7
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.7e-39 166.0 136 66.2
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.7e-39 166.0 136 66.2
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 2.2e-39 165.6 136 65.4
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 2.2e-39 165.6 136 65.4
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.2e-39 165.6 136 64.0
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 2.2e-39 165.6 137 66.4
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 2.9e-39 165.2 172 55.2
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 2.9e-39 165.2 136 64.7
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 3.8e-39 164.9 136 64.0
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 3.8e-39 164.9 136 65.4
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.8e-39 164.9 136 64.0
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 5.0e-39 164.5 148 62.2
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 5.0e-39 164.5 136 64.7
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.0e-39 164.5 136 64.0
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 5.0e-39 164.5 136 64.0
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 5.0e-39 164.5 136 64.0
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 5.0e-39 164.5 136 65.4
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 5.0e-39 164.5 137 64.2
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 6.5e-39 164.1 116 72.4
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 6.5e-39 164.1 136 65.4
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 8.5e-39 163.7 136 65.4
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 8.5e-39 163.7 136 65.4
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 8.5e-39 163.7 136 65.4
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 8.5e-39 163.7 136 64.0
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 8.5e-39 163.7 136 64.0
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 8.5e-39 163.7 136 64.0
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 1.1e-38 163.3 136 64.0
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 1.4e-38 162.9 136 65.4
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.4e-38 162.9 136 63.2
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 1.9e-38 162.5 136 63.2
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.9e-38 162.5 136 65.4
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.9e-38 162.5 136 65.4
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.9e-38 162.5 136 63.2
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 1.9e-38 162.5 136 65.4
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 1.9e-38 162.5 136 65.4
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 2.5e-38 162.2 136 64.0
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.2e-38 161.8 159 57.2
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 3.2e-38 161.8 136 64.7
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 3.2e-38 161.8 136 62.5
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.2e-38 161.4 153 58.2
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 7.2e-38 160.6 128 66.4
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 9.4e-38 160.2 136 61.8
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 9.4e-38 160.2 136 64.0
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.2e-37 159.8 136 62.5
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.6e-37 159.5 149 59.7
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 1.6e-37 159.5 136 63.2
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 2.7e-37 158.7 110 72.7
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 2.7e-37 158.7 136 64.0
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 4.7e-37 157.9 136 61.0
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 6.1e-37 157.5 136 64.0
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 2.3e-36 155.6 117 70.1
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 2.0e-35 152.5 140 59.3
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 9.7e-35 150.2 136 60.3
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.7e-34 148.3 136 59.6
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 3.7e-34 148.3 169 52.1
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 9.1e-33 143.7 189 46.6
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 1.2e-32 143.3 106 70.8
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 2.0e-32 142.5 139 56.8
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 3.5e-32 141.7 154 54.5
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 1.3e-31 139.8 76 88.2
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 8.5e-31 137.1 85 78.8
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 1.1e-30 136.7 76 85.5
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.1e-30 136.7 76 85.5
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.1e-30 136.7 76 85.5
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.1e-30 136.7 76 85.5
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 1.2e-29 133.3 76 82.9
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.2e-29 133.3 76 84.2
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 1.6e-29 132.9 76 82.9
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 1.6e-29 132.9 155 48.4
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.7e-29 132.1 76 81.6
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 8.0e-29 130.6 76 82.9
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.4e-28 129.8 80 75.0
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.9e-28 128.3 120 58.3
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 3.9e-28 128.3 76 81.6
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.1e-27 126.7 76 80.3
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.5e-27 126.3 76 78.9
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 4.4e-27 124.8 76 78.9
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 4.4e-27 124.8 76 78.9
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 4.4e-27 124.8 76 78.9
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 4.4e-27 124.8 76 78.9
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 5.7e-27 124.4 76 77.6
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 5.7e-27 124.4 95 67.4
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 5.7e-27 124.4 95 67.4
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 5.7e-27 124.4 76 76.3
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 7.4e-27 124.0 76 77.6
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 7.4e-27 124.0 76 78.9
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 9.7e-27 123.6 76 76.3
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.3e-26 123.2 76 76.3
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-26 122.9 76 77.6
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-26 122.9 76 77.6
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.7e-26 122.9 76 77.6
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 1.7e-26 122.9 78 75.6
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 1.7e-26 122.9 76 75.0
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.7e-26 122.9 93 64.5
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 2.2e-26 122.5 76 77.6
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 3.7e-26 121.7 76 76.3
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 3.7e-26 121.7 76 77.6
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 6.3e-26 120.9 76 75.0
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 6.3e-26 120.9 76 75.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 1.1e-25 120.2 73 75.3
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.8e-25 119.4 110 60.0
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 2.4e-25 119.0 76 73.7
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.4e-25 119.0 76 73.7
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 7.0e-25 117.5 76 73.7
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 9.4e-22 107.1 77 63.6
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 2.3e-20 102.4 108 50.9
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 5.7e-19 97.8 56 82.1
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 1.7e-18 96.3 56 80.4
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 1.4e-17 93.2 128 43.0
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 5.3e-17 91.3 142 37.3
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.0e-16 89.4 133 36.8
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 2.9e-15 85.5 49 81.6
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.6e-13 79.7 69 60.9
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 2.0e-11 72.8 79 55.7
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 3.7e-10 68.6 45 71.1
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 8.3e-10 67.4 79 53.2
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.1e-09 65.1 32 96.9
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.2e-08 63.5 31 96.8
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.2e-08 63.5 75 49.3
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.2e-08 63.5 31 96.8
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.7e-08 62.4 31 90.3
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 3.5e-08 62.0 31 93.5
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 3.5e-08 62.0 31 90.3
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.5e-08 62.0 30 96.7
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 4.5e-08 61.6 31 93.5
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 4.5e-08 61.6 31 93.5
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 1.3e-07 60.1 30 93.3
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.3e-07 59.3 30 90.0
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 1.1e-06 57.0 87 41.4


User provided reference genes

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