Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 4750.7 2391 100.0
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 2829.3 2563 60.2
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 2791.1 2585 59.2
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 2764.2 2569 59.5
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 2450.2 2574 53.5
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 2426.4 2578 53.3
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 2410.9 2618 52.8
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 2380.9 2568 52.9
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2369.0 2307 57.0
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 2358.6 2580 52.0
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 2337.0 2568 52.3
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 2333.5 2579 51.9
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 2328.1 2581 51.3
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2325.8 2581 51.2
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 2325.1 2584 51.8
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 2321.2 2592 51.7
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 2318.9 2560 52.4
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2313.1 2576 51.2
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 2305.8 2584 51.4
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 2301.2 2565 51.4
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 2298.5 2572 51.4
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2297.3 2572 51.4
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2296.9 2571 51.4
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2295.4 2574 51.7
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2295.0 2562 52.1
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 2295.0 2632 50.5
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 2291.2 2589 51.3
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2290.0 2573 51.3
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 2290.0 2562 52.1
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 2289.6 2568 50.8
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 2288.8 2572 51.2
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 2288.5 2574 51.8
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2282.3 2501 51.5
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 2281.5 2576 50.9
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2281.1 2553 51.7
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 2260.3 2572 50.7
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2245.7 2594 50.3
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 2243.4 2584 50.7
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 2240.3 2591 49.9
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2233.4 2584 50.0
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 2233.0 2573 50.3
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 2231.8 2584 49.9
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 2230.3 2573 50.0
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2221.4 2595 49.9
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 2218.0 2578 50.3
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 2216.4 2676 48.9
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 2212.2 2559 49.8
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2209.9 2592 49.3
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 2201.0 2599 49.2
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2197.5 2403 52.4
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 2197.5 2591 49.1
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 2194.1 2554 49.7
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 2183.3 2578 49.1
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 2182.5 2583 49.2
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 2181.4 2573 49.6
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 2166.0 2552 49.5
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 2160.6 2576 48.7
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 2160.2 2567 48.6
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 2159.8 2568 49.2
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2155.9 2565 48.7
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 2153.6 2565 48.6
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 2153.3 2569 48.7
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 2146.7 2566 48.3
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 2146.7 2566 48.3
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 2145.5 2565 48.4
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 2144.4 2561 48.3
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 2143.6 2564 48.4
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 2135.5 2563 48.5
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 2130.9 2573 48.2
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 2120.5 2597 48.2
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 2118.6 2563 48.3
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 2107.4 2592 47.8
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 2094.7 2573 47.8
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 2094.3 2550 48.9
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2001.5 2048 54.9
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 1899.4 2530 44.6
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 1868.2 2588 44.0
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 1860.1 2328 47.4
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1752.3 2251 47.3
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 1726.8 2147 48.1
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 1708.7 1619 58.3
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1662.5 2015 48.6
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 1635.9 1712 53.4
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 1592.4 2662 39.4
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1552.3 1523 57.2
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 1531.9 1489 57.2
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1435.2 2666 37.1
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1413.7 2702 35.8
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1408.7 1463 54.8
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1342.8 2592 34.6
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1341.6 2346 38.2
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1330.1 1865 44.8
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1259.2 1023 64.9
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1140.9 1717 42.1
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1105.5 1708 41.1
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 8.3e-306 1055.0 844 63.9
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 6.8e-300 1035.4 1526 42.2
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 1.0e-295 1021.5 972 57.8
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 3.3e-286 989.9 838 61.2
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 6.0e-264 916.0 1303 44.1
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 4.3e-262 909.8 857 57.9
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 5.3e-252 876.3 1463 39.1
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 7.7e-235 819.3 1027 46.9
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 5.0e-234 816.6 866 53.6
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 9.7e-230 802.4 963 49.5
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 3.4e-227 793.9 1011 47.2
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 2.0e-211 741.5 3057 25.3
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 9.8e-182 642.9 441 73.0
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 1.9e-180 638.6 410 78.5
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.5e-177 628.2 922 42.2
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.9e-156 558.9 775 44.0
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 2.0e-134 485.7 812 39.3
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.0e-133 483.4 656 43.4
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 1.9e-121 442.6 451 53.7
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.6e-118 432.2 327 67.3
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 5.3e-103 381.3 270 70.0
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 1.2e-102 380.2 537 44.1
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 2.9e-101 375.6 250 74.0
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 5.9e-86 324.7 750 33.3
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.6e-83 316.6 438 42.7
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 1.3e-80 307.0 244 61.1
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 8.3e-80 304.3 304 55.9
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 1.0e-77 297.4 215 71.6
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 4.3e-76 292.0 427 41.0
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 1.0e-74 287.3 413 41.4
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 2.5e-68 266.2 453 38.0
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 4.3e-68 265.4 501 37.5
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 5.1e-61 241.9 247 51.8
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 7.5e-57 228.0 375 38.9
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 7.5e-57 228.0 329 42.2
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 1.1e-52 214.2 280 44.6
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 8.1e-43 181.4 172 58.7
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 1.5e-41 177.2 260 38.5
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 4.4e-41 175.6 378 31.2
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 9.3e-39 167.9 154 56.5
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 6.2e-35 155.2 157 49.0
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 1.7e-32 147.1 157 51.6
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 6.4e-32 145.2 118 61.0
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.6e-22 114.0 435 26.4
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 6.7e-21 108.6 212 35.8
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 1.5e-20 107.5 81 65.4
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 1.8e-18 100.5 108 51.9
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 4.9e-16 92.4 80 61.2
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.2e-15 89.7 111 43.2
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 3.5e-14 86.3 86 55.8
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 1.5e-12 80.9 70 60.0
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 7.4e-12 78.6 121 40.5
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 1.5e-09 70.9 150 34.7
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.9e-09 68.9 91 41.8
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 7.7e-09 68.6 45 75.6
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 3.6e-06 59.7 180 28.9
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 6.1e-06 58.9 60 45.0


User provided reference genes

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