Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 1.1e-236 823.2 478 100.0
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 7.9e-99 365.2 484 53.7
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.4e-58 231.5 490 38.8
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 8.6e-45 185.7 454 34.4
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 3.3e-44 183.7 504 37.7
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 6.2e-43 179.5 483 34.6
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 2.3e-42 177.6 503 36.6
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 3.4e-41 173.7 503 34.0
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 6.4e-40 169.5 521 32.1
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 3.5e-38 163.7 469 37.3
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.5e-36 158.3 519 32.9
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 4.7e-35 153.3 444 31.3
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.8e-34 151.4 465 35.9
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 2.3e-34 151.0 494 35.2
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 2.3e-34 151.0 411 33.3
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 4.0e-34 150.2 477 34.2
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 4.0e-34 150.2 437 31.4
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 9.8e-33 145.6 461 35.1
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 9.8e-33 145.6 438 32.2
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.7e-32 144.8 477 32.5
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 2.9e-32 144.1 437 32.0
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 3.7e-32 143.7 437 33.2
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 3.7e-32 143.7 437 33.2
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 4.9e-32 143.3 512 34.0
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 3.0e-29 134.0 426 32.6
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.5e-28 131.7 463 33.0
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 5.6e-28 129.8 466 34.1
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 5.6e-28 129.8 511 32.3
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 7.3e-28 129.4 442 31.0
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 7.3e-28 129.4 542 30.4
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 9.5e-28 129.0 431 31.8
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 1.2e-27 128.6 511 31.5
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 2.1e-27 127.9 429 31.9
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.6e-27 127.1 508 33.9
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 8.1e-27 125.9 412 30.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.1e-26 124.0 446 34.1
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 8.9e-26 122.5 463 30.5
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 3.4e-25 120.6 435 31.3
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 3.4e-25 120.6 460 29.8
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 1.9e-23 114.8 439 29.8
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.9e-23 114.8 480 30.4
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 2.4e-23 114.4 365 34.2
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 2.4e-23 114.4 423 31.0
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 5.4e-23 113.2 477 29.1
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 2.7e-22 110.9 472 31.8
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 6.0e-22 109.8 472 28.2
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 7.8e-22 109.4 428 30.4
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 1.7e-21 108.2 339 31.0
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 3.9e-21 107.1 530 29.1
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 1.1e-20 105.5 456 29.6
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 3.3e-20 104.0 498 27.9
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 4.3e-20 103.6 562 28.5
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 4.3e-20 103.6 473 29.8
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 9.6e-20 102.4 431 28.5
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 1.6e-19 101.7 514 31.9
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.8e-19 100.9 436 29.1
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.6e-19 100.5 465 27.5
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 6.2e-19 99.8 434 29.0
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 8.1e-19 99.4 506 32.8
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 8.1e-19 99.4 506 32.8
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 1.4e-18 98.6 489 30.1
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 8.9e-18 95.9 483 26.9
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-17 95.5 463 27.4
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 1.2e-17 95.5 446 30.0
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 1.5e-17 95.1 402 28.1
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-17 94.7 407 28.5
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 2.0e-17 94.7 467 29.1
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.6e-17 94.4 392 29.1
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 3.4e-17 94.0 511 34.1
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 4.4e-17 93.6 413 30.3
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 4.4e-17 93.6 473 27.1
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 5.8e-17 93.2 436 27.8
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 5.8e-17 93.2 498 26.3
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 7.6e-17 92.8 554 24.2
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.7e-16 91.7 429 29.1
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.2e-16 91.3 446 26.7
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 3.8e-16 90.5 426 26.5
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 4.2e-15 87.0 63 68.3
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 7.1e-15 86.3 457 28.7
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 2.1e-14 84.7 537 27.0
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 2.7e-14 84.3 188 38.8
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 3.5e-14 84.0 428 30.6
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 4.6e-14 83.6 414 29.5
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 4.6e-14 83.6 409 29.1
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 7.8e-14 82.8 410 25.6
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 1.0e-13 82.4 510 25.7
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 1.0e-13 82.4 223 35.0
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-13 82.0 417 28.1
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 1.3e-13 82.0 417 28.1
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 1.3e-13 82.0 212 35.4
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 2.3e-13 81.3 480 26.7
Hma1.2p1_0723F.1_g208790 Hydrangea macrophylla HOM05D003733 ORTHO05D004035 3.0e-13 80.9 202 36.1
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 3.0e-13 80.9 538 23.6
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 5.1e-13 80.1 382 29.1
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 8.7e-13 79.3 455 26.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 1.1e-12 79.0 488 26.4
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 1.1e-12 79.0 488 26.4
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.5e-12 78.6 411 28.7
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 1.5e-12 78.6 460 29.8
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 5.6e-12 76.6 485 26.6
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 9.6e-12 75.9 445 26.7
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 1.3e-11 75.5 422 26.8
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 2.1e-11 74.7 445 27.4
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 3.6e-11 73.9 459 25.1
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.4e-10 72.0 480 27.3
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 1.4e-10 72.0 431 26.9
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 3.1e-10 70.9 474 25.7
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.1e-10 70.9 529 25.5
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 4.0e-10 70.5 150 34.0
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 4.0e-10 70.5 486 24.7
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 4.0e-10 70.5 500 25.8
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 9.0e-10 69.3 79 54.4
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 1.2e-09 68.9 289 31.5
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 1.5e-09 68.6 480 26.7
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 2.6e-09 67.8 485 26.2
CANSAT11G2490 Cannabis sativa HOM05D003733 ORTHO05D004035 2.6e-09 67.8 114 55.3
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 2.6e-09 67.8 455 28.6
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 4.5e-09 67.0 400 26.8
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 7.6e-09 66.2 414 26.8
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 9.9e-09 65.9 428 26.6
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 9.9e-09 65.9 514 26.3
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.3e-08 65.5 157 32.5
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 1.7e-08 65.1 439 26.2
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 3.8e-08 63.9 57 54.4
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 6.4e-08 63.2 479 25.7
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 6.4e-08 63.2 499 23.0
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 1.1e-07 62.4 221 29.0
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 1.4e-07 62.0 212 35.4
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.4e-07 62.0 130 32.3
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 1.9e-07 61.6 510 24.9
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 3.2e-07 60.8 484 25.8
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.2e-07 60.5 533 26.3
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 9.3e-07 59.3 77 40.3
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 2.7e-06 57.8 93 39.8
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 2.7e-06 57.8 481 24.9
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 2.7e-06 57.8 471 26.5
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.5e-06 57.4 377 26.8
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 3.5e-06 57.4 154 33.8
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 4.6e-06 57.0 554 24.5
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 6.0e-06 56.6 489 24.3
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 6.0e-06 56.6 460 25.2


User provided reference genes

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