Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 2.0e-80 302.4 153 100.0
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 3.1e-65 251.9 148 87.8
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 7.2e-62 240.7 140 89.3
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 2.1e-61 239.2 148 83.1
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 2.1e-61 239.2 148 83.1
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 6.1e-61 237.7 140 88.6
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 6.1e-61 237.7 140 88.6
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 6.1e-61 237.7 140 88.6
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 1.4e-60 236.5 140 87.9
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 2.3e-60 235.7 144 85.4
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 4.0e-60 235.0 144 84.0
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 4.0e-60 235.0 144 84.0
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 1.1e-59 233.4 139 87.8
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 3.3e-59 231.9 148 81.8
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 7.5e-59 230.7 139 87.8
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 9.7e-59 230.3 138 88.4
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.3e-58 229.9 142 83.1
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 3.7e-58 228.4 142 82.4
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 3.7e-58 228.4 139 87.1
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 3.7e-58 228.4 139 87.1
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 4.8e-58 228.0 136 87.5
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 1.4e-57 226.5 148 81.1
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 3.1e-57 225.3 139 86.3
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 1.7e-55 219.5 130 86.9
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 7.2e-54 214.2 145 77.9
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 7.2e-54 214.2 145 77.9
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 6.1e-53 211.1 145 76.6
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 6.1e-53 211.1 145 76.6
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 3.0e-52 208.8 145 75.9
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.5e-51 206.5 108 95.4
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.4e-51 205.3 148 73.6
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.4e-51 205.3 148 73.6
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 4.4e-51 204.9 148 73.6
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.7e-50 203.0 148 73.0
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 3.7e-50 201.8 106 95.3
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 6.3e-50 201.1 148 73.0
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 6.3e-50 201.1 148 73.0
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 6.3e-50 201.1 140 77.1
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 1.4e-49 199.9 140 76.4
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 1.4e-49 199.9 148 72.3
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 3.1e-49 198.7 140 75.7
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.2e-48 196.8 148 70.9
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 2.0e-48 196.1 139 75.5
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 2.7e-48 195.7 129 78.3
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 4.5e-48 194.9 101 96.0
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 1.3e-47 193.4 134 78.4
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.3e-47 193.4 134 78.4
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.3e-47 193.4 134 78.4
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 1.3e-47 193.4 134 78.4
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 1.3e-47 193.4 134 78.4
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.3e-47 193.4 148 73.0
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 1.3e-47 193.4 148 73.0
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 1.3e-47 193.4 148 73.0
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 2.9e-47 192.2 130 77.7
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 2.9e-47 192.2 130 77.7
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 3.8e-47 191.8 135 76.3
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 3.8e-47 191.8 148 68.9
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.0e-47 191.4 137 74.5
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 1.5e-46 189.9 134 78.4
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 3.2e-46 188.7 148 68.2
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 7.2e-46 187.6 134 75.4
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.2e-45 186.8 148 67.6
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 4.0e-44 181.8 125 77.6
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 6.8e-44 181.0 97 93.8
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 6.8e-44 181.0 97 92.8
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 8.8e-44 180.6 97 93.8
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 8.8e-44 180.6 97 93.8
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 4.4e-43 178.3 140 68.6
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 4.4e-43 178.3 127 74.0
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 7.5e-43 177.6 94 93.6
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 9.8e-43 177.2 125 76.8
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 9.8e-43 177.2 94 95.7
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 9.8e-43 177.2 94 95.7
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 1.7e-42 176.4 94 94.7
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 3.1e-41 172.2 98 86.7
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 4.7e-37 158.3 94 85.1
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.6e-35 152.5 146 61.0
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 3.4e-35 152.1 85 89.4
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 8.6e-31 137.5 89 82.0
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 8.3e-26 120.9 87 75.9
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 1.9e-25 119.8 66 89.4
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 9.2e-25 117.5 74 82.4
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 9.2e-25 117.5 74 82.4
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 6.6e-23 111.3 84 73.8
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 1.1e-22 110.5 64 90.6
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 5.6e-22 108.2 73 76.7
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 4.7e-21 105.1 62 83.9
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 1.5e-19 100.1 49 98.0
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.4e-19 99.0 96 58.3
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 5.8e-19 98.2 66 78.8
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 1.7e-18 96.7 56 87.5
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.0e-15 87.4 49 83.7
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 4.0e-12 75.5 40 90.0
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 6.4e-10 68.2 57 61.4
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 1.1e-09 67.4 37 91.9
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 1.9e-09 66.6 39 87.2
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 1.9e-09 66.6 43 72.1
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 5.4e-09 65.1 39 79.5
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 5.4e-09 65.1 89 48.3
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.7e-07 60.1 30 93.3
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 8.6e-07 57.8 27 100.0
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 1.5e-06 57.0 38 78.9


User provided reference genes

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