Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 4.0e-93 344.7 172 100.0
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 9.2e-74 280.4 172 79.1
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 1.7e-72 276.2 163 81.0
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 3.1e-69 265.4 173 75.7
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.1e-69 265.4 172 75.6
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 4.4e-68 261.5 173 74.6
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 2.2e-67 259.2 174 71.8
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 1.1e-66 256.9 172 70.3
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 1.1e-66 256.9 172 70.3
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 2.4e-66 255.8 163 75.5
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.4e-66 255.8 172 69.8
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 3.2e-66 255.4 176 73.3
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 4.1e-66 255.0 169 74.0
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 7.1e-66 254.2 172 69.8
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 7.1e-66 254.2 170 70.0
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 7.1e-66 254.2 176 72.7
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 2.1e-65 252.7 161 73.3
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 2.1e-65 252.7 161 73.3
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 2.1e-65 252.7 161 73.3
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 2.1e-65 252.7 172 73.8
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.7e-65 252.3 174 73.6
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 3.5e-65 251.9 161 72.0
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 3.5e-65 251.9 161 72.0
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 72.3
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 3.5e-65 251.9 173 72.3
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.6e-65 251.5 174 73.0
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.6e-65 251.5 174 73.0
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 4.6e-65 251.5 174 73.0
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 7.8e-65 250.8 161 72.7
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 7.8e-65 250.8 169 71.0
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 1.0e-64 250.4 161 72.0
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.0e-64 250.4 172 72.7
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 1.3e-64 250.0 172 71.5
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.3e-64 250.0 172 69.2
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 1.3e-64 250.0 161 72.7
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 1.3e-64 250.0 161 72.0
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 1.3e-64 250.0 173 71.7
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 1.3e-64 250.0 175 73.7
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 1.3e-64 250.0 173 73.4
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 2.3e-64 249.2 161 72.7
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.3e-64 249.2 161 72.0
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 3.0e-64 248.8 179 72.6
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.0e-64 248.8 164 73.2
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 3.0e-64 248.8 164 73.2
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 3.9e-64 248.4 164 72.6
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 3.9e-64 248.4 164 72.6
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 5.1e-64 248.1 174 71.3
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 5.1e-64 248.1 172 68.6
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 5.1e-64 248.1 174 71.8
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 6.6e-64 247.7 161 72.0
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 6.6e-64 247.7 161 72.0
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 6.6e-64 247.7 162 71.6
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 6.6e-64 247.7 170 70.6
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 8.6e-64 247.3 173 69.4
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 8.6e-64 247.3 161 71.4
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 8.6e-64 247.3 175 71.4
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 8.6e-64 247.3 174 70.7
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 1.1e-63 246.9 179 70.4
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 1.1e-63 246.9 182 69.2
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.5e-63 246.5 166 72.9
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.5e-63 246.5 164 72.6
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.5e-63 246.5 161 70.8
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 1.9e-63 246.1 175 69.7
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.9e-63 246.1 172 67.4
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.9e-63 246.1 170 71.2
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 2.5e-63 245.7 170 70.6
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 2.5e-63 245.7 164 73.8
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 2.5e-63 245.7 170 71.2
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 3.3e-63 245.4 174 69.5
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 5.6e-63 244.6 172 70.9
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 5.6e-63 244.6 175 68.6
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 7.3e-63 244.2 173 71.7
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 7.3e-63 244.2 163 73.0
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 1.2e-62 243.4 175 69.1
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 1.2e-62 243.4 163 72.4
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 2.8e-62 242.3 175 69.7
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 3.6e-62 241.9 177 70.1
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.6e-62 241.9 163 71.8
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 4.7e-62 241.5 182 69.8
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 6.2e-62 241.1 174 69.5
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 6.2e-62 241.1 174 69.5
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 8.1e-62 240.7 226 56.2
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 1.1e-61 240.4 165 71.5
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.4e-61 240.0 176 68.2
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.4e-61 239.2 174 68.4
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 2.4e-61 239.2 174 69.5
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 2.4e-61 239.2 159 72.3
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 5.2e-61 238.0 142 76.8
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 6.9e-61 237.7 164 71.3
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 9.0e-61 237.3 164 72.0
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.6e-60 235.7 202 61.4
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.6e-60 235.7 202 61.4
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.6e-60 235.7 202 61.4
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 2.6e-60 235.7 169 69.8
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 2.6e-60 235.7 169 67.5
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 3.4e-60 235.3 182 66.5
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 4.4e-60 235.0 174 64.9
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 4.4e-60 235.0 162 69.8
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 7.6e-60 234.2 174 69.0
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 9.9e-60 233.8 170 67.6
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 2.2e-59 232.6 174 64.4
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 3.8e-59 231.9 197 63.5
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 1.4e-58 229.9 158 70.9
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 5.4e-58 228.0 162 67.9
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.2e-57 226.9 209 58.9
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 3.9e-56 221.9 220 57.3
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 7.3e-55 217.6 139 73.4
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 6.2e-54 214.5 164 61.6
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 8.1e-54 214.2 177 65.0
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 4.0e-53 211.8 262 46.2
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 9.0e-53 210.7 190 61.1
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 4.5e-52 208.4 174 62.6
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.8e-51 205.3 211 55.0
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 5.1e-48 194.9 143 65.7
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 5.1e-48 194.9 185 58.4
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.5e-47 192.6 120 75.0
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 2.0e-44 183.0 113 73.5
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 2.6e-44 182.6 162 57.4
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 1.5e-39 166.8 173 55.5
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 7.4e-39 164.5 116 66.4
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 2.0e-36 156.4 113 64.6
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 3.2e-34 149.1 108 65.7
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 5.5e-34 148.3 142 46.5
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 1.6e-33 146.7 107 68.2
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 2.7e-33 146.0 108 66.7
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 4.6e-33 145.2 139 46.0
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 7.9e-33 144.4 119 63.0
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.5e-31 140.2 117 63.2
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.3e-30 137.1 110 62.7
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 1.8e-29 133.3 95 69.5
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 1.5e-28 130.2 88 70.5
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.2e-25 120.6 82 72.0
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 1.3e-24 117.1 93 64.5
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 3.9e-24 115.5 142 41.5
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 3.9e-24 115.5 74 70.3
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 3.9e-24 115.5 74 70.3
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 1.4e-21 107.1 63 77.8
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.2e-20 104.0 122 49.2
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.2e-20 104.0 64 75.0
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 2.6e-20 102.8 61 77.0
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 5.9e-20 101.7 102 42.2
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 6.5e-19 98.2 72 63.9
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-18 97.4 122 46.7
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 1.6e-17 93.6 60 71.7
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 1.6e-17 93.6 104 39.4
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 3.9e-16 89.0 106 41.5
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 5.1e-16 88.6 82 50.0
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 2.4e-13 79.7 47 74.5
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 3.4e-12 75.9 136 31.6
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.7e-12 74.7 104 42.3
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.7e-06 57.0 32 84.4


User provided reference genes

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