Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_82.g26987 Utricularia gibba HOM05D005174 ORTHO05D006784 2.3e-162 575.5 287 100.0
MSTRG.1457 Avicennia marina HOM05D005174 ORTHO05D006784 4.0e-82 308.9 306 55.6
Dinv40398 Davidia involucrata HOM05D005174 ORTHO05D006784 6.9e-82 308.1 309 56.0
GSVIVG01008896001 Vitis vinifera HOM05D005174 ORTHO05D006784 7.6e-81 304.7 309 54.7
Migut.C01145 Erythranthe guttata HOM05D005174 ORTHO05D006784 1.7e-80 303.5 295 55.9
SGA_v2.0_scaffold52G18977 Striga asiatica HOM05D005174 ORTHO05D006784 4.9e-80 302.0 301 56.8
CSS0047682 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.2e-78 297.4 301 54.8
CSS0048949 Camellia sinensis var. sinensis HOM05D005174 ORTHO05D006784 1.3e-77 293.9 302 53.6
Sopen06g020560 Solanum pennellii HOM05D005174 ORTHO05D006784 6.7e-77 291.6 309 54.4
PGSC0003DMG400017574 Solanum tuberosum HOM05D005174 ORTHO05D006784 6.7e-77 291.6 309 54.4
SalBow7G2597 Salvia bowleyana HOM05D005174 ORTHO05D006784 1.5e-76 290.4 349 49.9
arahy.Tifrunner.gnm1.ann1.3YB7R6 Arachis hypogaea HOM05D005174 ORTHO05D006784 2.5e-76 289.7 308 53.2
Solyc06g060420.3 Solanum lycopersicum HOM05D005174 ORTHO05D006784 2.5e-76 289.7 311 54.3
HanXRQChr02g0041151 Helianthus annuus HOM05D005174 ORTHO05D006784 3.7e-75 285.8 306 53.6
COL.COLO4_12205 Corchorus olitorius HOM05D005174 ORTHO05D006784 2.4e-74 283.1 310 51.6
Phvul.009G123200 Phaseolus vulgaris HOM05D005174 ORTHO05D006784 2.4e-74 283.1 311 52.1
Eucgr.H00450 Eucalyptus grandis HOM05D005174 ORTHO05D006784 4.0e-74 282.3 309 51.8
Gohir.A05G233700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 4.0e-74 282.3 309 51.5
Gorai.009G244400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.3e-74 282.0 309 51.5
Thecc.08G122000 Theobroma cacao HOM05D005174 ORTHO05D006784 5.3e-74 282.0 310 51.3
Gohir.D02G080900 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.5e-73 280.4 302 51.7
Nitab4.5_0008211g0030 Nicotiana tabacum HOM05D005174 ORTHO05D006784 1.5e-73 280.4 321 50.8
Gorai.005G090400 Gossypium raimondii HOM05D005174 ORTHO05D006784 5.8e-73 278.5 309 50.5
Prupe.1G501000 Prunus persica HOM05D005174 ORTHO05D006784 1.0e-72 277.7 308 52.3
Gohir.D05G236100 Gossypium hirsutum HOM05D005174 ORTHO05D006784 1.3e-72 277.3 309 50.8
Lj5g0013947 Lotus japonicus HOM05D005174 ORTHO05D006784 1.7e-72 276.9 307 52.4
VMungo1309G0682 Vigna mungo HOM05D005174 ORTHO05D006784 2.2e-72 276.6 313 53.4
TAR381G1686 Trochodendron aralioides HOM05D005174 ORTHO05D006784 4.9e-72 275.4 307 52.8
Manes.02G161600 Manihot esculenta HOM05D005174 ORTHO05D006784 6.5e-72 275.0 311 50.8
Ca_13578_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 1.4e-71 273.9 310 50.6
Glyma.06G111200 Glycine max HOM05D005174 ORTHO05D006784 1.4e-71 273.9 313 51.4
PGR044G1014 Punica granatum HOM05D005174 ORTHO05D006784 1.9e-71 273.5 311 49.5
Cpa.g.sc36.39 Carica papaya HOM05D005174 ORTHO05D006784 4.2e-71 272.3 309 49.8
Cc01_g07610 Coffea canephora HOM05D005174 ORTHO05D006784 4.2e-71 272.3 308 53.6
Duzib093G0119 Durio zibethinus HOM05D005174 ORTHO05D006784 5.5e-71 271.9 311 49.5
Lj1g0014313 Lotus japonicus HOM05D005174 ORTHO05D006784 5.5e-71 271.9 309 50.8
Potri.005G175900 Populus trichocarpa HOM05D005174 ORTHO05D006784 9.3e-71 271.2 308 50.0
Lsat_1_v5_gn_4_135460 Lactuca sativa HOM05D005174 ORTHO05D006784 2.1e-70 270.0 325 48.9
TWI56G0960 Tripterygium wilfordii HOM05D005174 ORTHO05D006784 2.7e-70 269.6 301 50.5
Duzib116G0013 Durio zibethinus HOM05D005174 ORTHO05D006784 4.6e-70 268.9 322 48.1
Sed0012589 Sechium edule HOM05D005174 ORTHO05D006784 1.3e-69 267.3 308 49.7
CsaV3_4G028370 Cucumis sativus L. HOM05D005174 ORTHO05D006784 1.8e-69 266.9 306 50.3
Medtr3g072620 Medicago truncatula HOM05D005174 ORTHO05D006784 3.9e-69 265.8 317 50.5
Eucgr.L02995 Eucalyptus grandis HOM05D005174 ORTHO05D006784 5.1e-69 265.4 293 52.2
Oeu047941.1 Olea europaea HOM05D005174 ORTHO05D006784 5.1e-69 265.4 318 50.0
ClCG11G015640 Citrullus lanatus HOM05D005174 ORTHO05D006784 6.7e-69 265.0 306 49.7
PSO782G4297 Papaver somniferum HOM05D005174 ORTHO05D006784 6.7e-69 265.0 310 48.4
Psat5g120840 Pisum sativum HOM05D005174 ORTHO05D006784 8.7e-69 264.6 310 50.0
Glyma.14G147200 Glycine max HOM05D005174 ORTHO05D006784 1.1e-68 264.2 311 48.2
ECA232G2439 Erigeron canadensis HOM05D005174 ORTHO05D006784 1.9e-68 263.5 302 50.3
Ciclev10001813m.g Citrus clementina HOM05D005174 ORTHO05D006784 5.7e-68 261.9 309 50.5
TPR.G22992 Trifolium pratense HOM05D005174 ORTHO05D006784 5.7e-68 261.9 314 50.0
MD15G1352500 Malus domestica HOM05D005174 ORTHO05D006784 7.4e-68 261.5 303 48.8
Nn5g28198 Nelumbo nucifera HOM05D005174 ORTHO05D006784 9.7e-68 261.2 305 50.2
arahy.Tifrunner.gnm1.ann1.Z8FB5F Arachis hypogaea HOM05D005174 ORTHO05D006784 1.3e-67 260.8 363 44.6
CANSAT25G0921 Cannabis sativa HOM05D005174 ORTHO05D006784 1.3e-67 260.8 309 48.5
Peaxi162Scf00051g00623 Petunia axillaris HOM05D005174 ORTHO05D006784 1.3e-67 260.8 297 50.8
vmacro00818 Vaccinium macrocarpon HOM05D005174 ORTHO05D006784 1.6e-67 260.4 285 54.0
PSO170G4538 Papaver somniferum HOM05D005174 ORTHO05D006784 6.3e-67 258.5 307 47.2
Lalb_Chr08g0241531 Lupinus albus HOM05D005174 ORTHO05D006784 8.2e-67 258.1 304 49.3
Lalb_Chr17g0343851 Lupinus albus HOM05D005174 ORTHO05D006784 8.2e-67 258.1 311 48.2
RcHm_v2.0_Chr6g0295461 Rosa chinensis HOM05D005174 ORTHO05D006784 4.1e-66 255.8 302 49.3
Cfa015995 Carpinus fangiana HOM05D005174 ORTHO05D006784 5.3e-66 255.4 300 49.3
FvH4_2g26610 Fragaria vesca HOM05D005174 ORTHO05D006784 9.0e-66 254.6 310 47.7
FAN24G0526 Fragaria x ananassa HOM05D005174 ORTHO05D006784 9.0e-66 254.6 310 47.7
QL09p035644 Quercus lobata HOM05D005174 ORTHO05D006784 9.0e-66 254.6 298 49.0
Hund24749 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.2e-65 254.2 311 46.9
Sc01g0001320 Simmondsia chinensis HOM05D005174 ORTHO05D006784 2.0e-65 253.4 310 47.4
AT1G44835 Arabidopsis thaliana HOM05D005174 ORTHO05D006784 3.4e-65 252.7 298 47.7
AL1G52500 Arabidopsis lyrata HOM05D005174 ORTHO05D006784 5.9e-65 251.9 299 46.8
CiPaw.05G223800 Carya illinoinensis HOM05D005174 ORTHO05D006784 1.0e-64 251.1 293 49.5
THA.LOC104806814 Tarenaya hassleriana HOM05D005174 ORTHO05D006784 1.0e-64 251.1 306 48.0
Aqoxy6G00176 Aquilegia oxysepala HOM05D005174 ORTHO05D006784 1.3e-64 250.8 303 48.2
Actinidia29457 Actinidia chinensis HOM05D005174 ORTHO05D006784 2.2e-64 250.0 300 48.7
CAN.G1396.5 Capsicum annuum HOM05D005174 ORTHO05D006784 2.9e-64 249.6 255 55.3
BolC6t35233H Brassica oleracea HOM05D005174 ORTHO05D006784 3.8e-64 249.2 298 46.6
Sp1g33700 Schrenkiella parvula HOM05D005174 ORTHO05D006784 3.8e-64 249.2 296 47.6
Thhalv10004660m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 5.0e-64 248.8 298 48.3
BcaC08g42881 Brassica carinata HOM05D005174 ORTHO05D006784 6.5e-64 248.4 296 47.0
Sabra05G0132500 Salix brachista HOM05D005174 ORTHO05D006784 8.5e-64 248.1 363 41.3
CARHR036100 Cardamine hirsuta HOM05D005174 ORTHO05D006784 3.2e-63 246.1 300 47.0
RhsimUnG0094500 Rhododendron simsii HOM05D005174 ORTHO05D006784 3.2e-63 246.1 251 57.8
C06p00970 Brassica napus HOM05D005174 ORTHO05D006784 5.5e-63 245.4 298 46.6
Carub.0001s3538 Capsella rubella HOM05D005174 ORTHO05D006784 7.2e-63 245.0 299 46.8
BraA08t32633Z Brassica rapa HOM05D005174 ORTHO05D006784 9.4e-63 244.6 294 46.3
A08p06300 Brassica napus HOM05D005174 ORTHO05D006784 1.2e-62 244.2 294 45.9
Psat2g085920 Pisum sativum HOM05D005174 ORTHO05D006784 1.6e-62 243.8 360 43.9
ATR0193G024 Amborella trichopoda HOM05D005174 ORTHO05D006784 2.1e-62 243.4 302 47.7
BcaC07g37283 Brassica carinata HOM05D005174 ORTHO05D006784 2.1e-62 243.4 294 45.6
C08p07120 Brassica napus HOM05D005174 ORTHO05D006784 2.1e-62 243.4 294 45.6
BolC8t47557H Brassica oleracea HOM05D005174 ORTHO05D006784 2.1e-62 243.4 294 45.6
Thhalv10021201m.g Eutrema salsugineum HOM05D005174 ORTHO05D006784 2.1e-62 243.4 298 46.6
BcaB04g17581 Brassica carinata HOM05D005174 ORTHO05D006784 6.1e-62 241.9 296 46.6
Nitab4.5_0000633g0140 Nicotiana tabacum HOM05D005174 ORTHO05D006784 6.1e-62 241.9 283 49.8
A10p07300 Brassica napus HOM05D005174 ORTHO05D006784 7.9e-62 241.5 298 46.0
BraSC36t46091Z Brassica rapa HOM05D005174 ORTHO05D006784 7.9e-62 241.5 298 46.0
AUR62042433 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.8e-61 240.4 314 44.6
FAN20G1758 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.3e-61 240.0 302 47.4
Zm00001eb193560 Zea mays HOM05D005174 ORTHO05D006784 9.7e-60 234.6 299 44.8
Aa31LG6G9210 Aethionema arabicum HOM05D005174 ORTHO05D006784 1.3e-59 234.2 303 44.2
AUR62018164 Chenopodium quinoa HOM05D005174 ORTHO05D006784 1.7e-59 233.8 332 42.5
Os02g0767700 Oryza sativa ssp. japonica HOM05D005174 ORTHO05D006784 1.8e-58 230.3 293 45.1
CDE05G2191 Ceratophyllum demersum HOM05D005174 ORTHO05D006784 8.5e-56 221.5 306 44.8
Sc01g0001280 Simmondsia chinensis HOM05D005174 ORTHO05D006784 8.5e-56 221.5 270 48.1
DCAR_017401 Daucus carota HOM05D005174 ORTHO05D006784 1.1e-55 221.1 203 60.6
EL10Ac2g03105 Beta vulgaris HOM05D005174 ORTHO05D006784 1.2e-54 217.6 294 43.9
Atru.chr13.1416 Acer truncatum HOM05D005174 ORTHO05D006784 2.1e-54 216.9 286 45.5
MELO3C032634.2 Cucumis melo HOM05D005174 ORTHO05D006784 1.8e-50 203.8 304 44.1
MBI03_g33021_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 3.8e-48 196.1 291 43.0
HPP92_001042 Vanilla planifolia HOM05D005174 ORTHO05D006784 4.2e-47 192.6 291 41.2
Mapoly0010s0001 Marchantia polymorpha HOM05D005174 ORTHO05D006784 4.4e-44 182.6 305 38.7
Pp3c18_22250 Physcomitrium patens HOM05D005174 ORTHO05D006784 7.4e-44 181.8 320 37.5
FAN15G0922 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.3e-43 181.0 340 37.4
FAN27G1282 Fragaria x ananassa HOM05D005174 ORTHO05D006784 2.6e-41 173.3 310 37.1
SEGI_02373 Sequoiadendron giganteum HOM05D005174 ORTHO05D006784 3.5e-41 172.9 271 38.7
Gohir.A02G073700 Gossypium hirsutum HOM05D005174 ORTHO05D006784 8.0e-38 161.8 290 37.9
Ah.10g032020 Amaranthus hybridus HOM05D005174 ORTHO05D006784 2.6e-36 156.8 312 37.8
FAN20G0512 Fragaria x ananassa HOM05D005174 ORTHO05D006784 1.2e-30 137.9 262 37.0
Lj7A337T25 Lonicera japonica HOM05D005174 ORTHO05D006784 2.6e-28 130.2 190 44.2
PRCOL_00005180 Prasinoderma coloniale HOM05D005174 ORTHO05D006784 4.8e-27 125.9 168 38.7
Haze_00470 Corylus avellana HOM05D005174 ORTHO05D006784 3.8e-24 116.3 109 61.5
Cre10.g425950 Chlamydomonas reinhardtii HOM05D005174 ORTHO05D006784 1.1e-23 114.8 317 30.0
MD08G1166300 Malus domestica HOM05D005174 ORTHO05D006784 8.9e-21 105.1 110 51.8
Haze_00471 Corylus avellana HOM05D005174 ORTHO05D006784 1.2e-20 104.8 181 38.1
Ca_03754_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 3.4e-20 103.2 101 54.5
Sabra15G0076900 Salix brachista HOM05D000453 ORTHO05D000387 1.3e-19 101.3 140 42.9
Hund16845 Selenicereus undatus HOM05D005174 ORTHO05D006784 1.3e-16 91.3 61 67.2
SMO200G0142 Selaginella moellendorffii HOM05D000188 ORTHO05D007139 4.3e-15 86.3 239 31.0
Ca_03755_v3 Cicer arietinum L. HOM05D005174 ORTHO05D006784 9.8e-12 75.1 85 49.4
Cfa010764 Carpinus fangiana HOM05D005174 ORTHO05D006784 4.1e-10 69.7 97 43.3
Glyma.04G251502 Glycine max HOM05D005174 ORTHO05D006784 3.5e-09 66.6 108 38.0
Sabra02G0067100 Salix brachista HOM05D005174 ORTHO05D006784 1.9e-07 60.8 64 46.9
MBI04_g30787_MAGBIO Magnolia biondii HOM05D005174 ORTHO05D006784 9.5e-07 58.5 61 45.9
SGA_v2.0_scaffold24G10473 Striga asiatica HOM05D021410 ORTHO05D401290 4.7e-06 56.2 36 66.7
Oeu059427.1 Olea europaea HOM05D005174 ORTHO05D006784 6.2e-06 55.8 42 57.1
SEGI_30371 Sequoiadendron giganteum HOM05D005174 ORTHO05D050453 6.2e-06 55.8 41 63.4


User provided reference genes

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