Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g5066 Utricularia gibba HOM05D007628 ORTHO05D007342 5.3e-43 177.2 83 100.0
FvH4_5g32140 Fragaria vesca HOM05D007628 ORTHO05D007342 7.2e-16 87.0 72 51.4
FAN08G3537 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.2e-16 87.0 72 51.4
FAN18G2608 Fragaria x ananassa HOM05D007628 ORTHO05D007342 7.2e-16 87.0 72 51.4
FAN08G0137 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.1e-15 85.5 70 51.4
FAN08G3446 Fragaria x ananassa HOM05D007628 ORTHO05D007342 2.1e-15 85.5 70 51.4
RcHm_v2.0_Chr7g0228231 Rosa chinensis HOM05D007628 ORTHO05D007342 8.0e-15 83.6 72 48.6
FvH4_5g32170 Fragaria vesca HOM05D007628 ORTHO05D007342 1.8e-14 82.4 70 50.0
FvH4_6g07490 Fragaria vesca HOM05D007628 ORTHO05D007342 2.3e-14 82.0 72 50.0
FAN14G5279 Fragaria x ananassa HOM05D007628 ORTHO05D007342 4.0e-14 81.3 73 49.3
unitig_578.g16589 Utricularia gibba HOM05D007628 ORTHO05D007342 6.8e-14 80.5 87 51.7
RcHm_v2.0_Chr7g0228331 Rosa chinensis HOM05D007628 ORTHO05D007342 1.5e-13 79.3 72 48.6
RcHm_v2.0_Chr7g0228201 Rosa chinensis HOM05D007628 ORTHO05D007342 2.0e-13 79.0 72 45.8
unitig_8.g5068 Utricularia gibba HOM05D007628 ORTHO05D007342 2.0e-13 79.0 79 48.1
Prupe.1G552600 Prunus persica HOM05D007628 ORTHO05D007342 5.7e-13 77.4 73 47.9
FvH4_5g32180 Fragaria vesca HOM05D007628 ORTHO05D007342 7.5e-13 77.0 71 46.5
AUR62004619 Chenopodium quinoa HOM05D007628 ORTHO05D007342 1.7e-12 75.9 54 57.4
FAN08G2431 Fragaria x ananassa HOM05D007628 ORTHO05D007342 3.7e-12 74.7 79 44.3
Prupe.1G552700 Prunus persica HOM05D007628 ORTHO05D007342 3.7e-12 74.7 72 47.2
AUR62022642 Chenopodium quinoa HOM05D007628 ORTHO05D007342 6.3e-12 73.9 54 55.6
Medtr4g032865 Medicago truncatula HOM05D007628 ORTHO05D007342 1.1e-11 73.2 73 46.6
RcHm_v2.0_Chr7g0228221 Rosa chinensis HOM05D007628 ORTHO05D007342 1.4e-11 72.8 77 41.6
Medtr4g032815 Medicago truncatula HOM05D007628 ORTHO05D007342 1.8e-11 72.4 75 48.0
Psat7g225960 Pisum sativum HOM05D007628 ORTHO05D007342 2.4e-11 72.0 51 60.8
Psat7g225920 Pisum sativum HOM05D007628 ORTHO05D007342 1.2e-10 69.7 51 58.8
Sc01g0001910 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.6e-10 69.3 79 44.3
Psat7g225880 Pisum sativum HOM05D007628 ORTHO05D007342 3.5e-10 68.2 49 57.1
Cc00_g22140 Coffea canephora HOM05D007628 ORTHO05D007342 4.5e-10 67.8 74 43.2
Os03g0734300 Oryza sativa ssp. japonica HOM05D007628 ORTHO05D007342 4.5e-10 67.8 71 43.7
TPR.G34100 Trifolium pratense HOM05D007628 ORTHO05D007342 4.5e-10 67.8 73 42.5
Cc10_g10210 Coffea canephora HOM05D007628 ORTHO05D007342 5.9e-10 67.4 75 41.3
Migut.C01297 Erythranthe guttata HOM05D007628 ORTHO05D007342 5.9e-10 67.4 52 57.7
arahy.Tifrunner.gnm1.ann1.UI0JR9 Arachis hypogaea HOM05D007628 ORTHO05D007342 1.0e-09 66.6 78 44.9
CAN.G508.19 Capsicum annuum HOM05D008200 ORTHO05D007342 1.0e-09 66.6 82 43.9
Lalb_Chr20g0108111 Lupinus albus HOM05D007628 ORTHO05D007342 2.2e-09 65.5 74 41.9
Lalb_Chr25g0283251 Lupinus albus HOM05D007628 ORTHO05D007342 2.2e-09 65.5 82 43.9
arahy.Tifrunner.gnm1.ann1.GT4ITC Arachis hypogaea HOM05D007628 ORTHO05D007342 2.9e-09 65.1 73 42.5
CAN.G308.48 Capsicum annuum HOM05D007628 ORTHO05D007342 2.9e-09 65.1 51 51.0
unitig_578.g16588 Utricularia gibba HOM05D007628 ORTHO05D007342 2.9e-09 65.1 49 55.1
Haze_21289 Corylus avellana HOM05D017027 ORTHO05D007342 3.8e-09 64.7 52 53.8
Psat7g226000 Pisum sativum HOM05D007628 ORTHO05D007342 3.8e-09 64.7 72 45.8
arahy.Tifrunner.gnm1.ann1.L82REB Arachis hypogaea HOM05D007628 ORTHO05D007342 8.5e-09 63.5 71 40.8
TPR.G34119 Trifolium pratense HOM05D007628 ORTHO05D007342 1.1e-08 63.2 51 49.0
SalBow7G2761 Salvia bowleyana HOM05D007628 ORTHO05D007342 1.5e-08 62.8 64 42.2
EL10Ac1g00115 Beta vulgaris HOM05D007628 ORTHO05D007342 2.5e-08 62.0 44 59.1
Ah.09g230940 Amaranthus hybridus HOM05D007628 ORTHO05D007342 5.5e-08 60.8 48 50.0
Eucgr.F03003 Eucalyptus grandis HOM05D007628 ORTHO05D007342 5.5e-08 60.8 71 45.1
Lj4g0016425 Lotus japonicus HOM05D007628 ORTHO05D007342 5.5e-08 60.8 74 44.6
RcHm_v2.0_Chr7g0228301 Rosa chinensis HOM05D007628 ORTHO05D007342 7.2e-08 60.5 72 36.1
Hund27101 Selenicereus undatus HOM05D007628 ORTHO05D007342 7.2e-08 60.5 69 46.4
Nitab4.5_0005382g0020 Nicotiana tabacum HOM05D008200 ORTHO05D007342 1.2e-07 59.7 83 34.9
Sc16g0006710 Simmondsia chinensis HOM05D007628 ORTHO05D007342 1.2e-07 59.7 72 45.8
PGSC0003DMG400002110 Solanum tuberosum HOM05D008200 ORTHO05D007342 1.6e-07 59.3 83 36.1
PGR042G2312 Punica granatum HOM05D007628 ORTHO05D007342 2.1e-07 58.9 67 47.8
QL02p025976 Quercus lobata HOM05D007628 ORTHO05D007342 2.1e-07 58.9 65 41.5
QL93p0163_0044 Quercus lobata HOM05D007628 ORTHO05D007342 2.1e-07 58.9 65 41.5
QL02p025972 Quercus lobata HOM05D007628 ORTHO05D007342 8.0e-07 57.0 64 39.1
QL93p0163_0041 Quercus lobata HOM05D007628 ORTHO05D007342 8.0e-07 57.0 64 39.1
Lj4g0001077 Lotus japonicus HOM05D007628 ORTHO05D007342 1.0e-06 56.6 73 39.7
Manes.18G103800 Manihot esculenta HOM05D007628 ORTHO05D007342 1.0e-06 56.6 64 40.6
Solyc03g020050.3 Solanum lycopersicum HOM05D008200 ORTHO05D010849 1.8e-06 55.8 51 43.1
Sopen03g029570 Solanum pennellii HOM05D008200 ORTHO05D010849 1.8e-06 55.8 51 43.1
TPR.G34134 Trifolium pratense HOM05D007628 ORTHO05D007342 1.8e-06 55.8 73 37.0
CAN.G861.42 Capsicum annuum HOM05D008200 ORTHO05D010849 2.3e-06 55.5 52 46.2
PGSC0003DMG400015290 Solanum tuberosum HOM05D008200 ORTHO05D010849 2.3e-06 55.5 52 48.1
PGSC0003DMG400024075 Solanum tuberosum HOM05D008200 ORTHO05D007342 2.3e-06 55.5 83 33.7
Peaxi162Scf00071g00435 Petunia axillaris HOM05D008200 ORTHO05D010849 3.0e-06 55.1 81 37.0
Hund02181 Selenicereus undatus HOM05D007628 ORTHO05D007342 3.0e-06 55.1 79 40.5
PGSC0003DMG400024067 Solanum tuberosum HOM05D008200 ORTHO05D007342 3.0e-06 55.1 83 33.7
Peaxi162Scf00071g00049 Petunia axillaris HOM05D008200 ORTHO05D007342 6.8e-06 53.9 83 32.5
CSS0040221 Camellia sinensis var. sinensis HOM05D007628 ORTHO05D007342 8.8e-06 53.5 74 41.9
CAN.G201.40 Capsicum annuum HOM05D008200 ORTHO05D007342 8.8e-06 53.5 83 31.3


User provided reference genes

Program Settings