Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g5004 Utricularia gibba HOM05D004183 ORTHO05D005022 0.0e+00 1607.8 880 100.0
MSTRG.24596 Avicennia marina HOM05D004183 ORTHO05D005022 1.6e-275 953.0 921 61.8
Migut.N00455 Erythranthe guttata HOM05D004183 ORTHO05D005022 2.2e-272 942.6 925 54.7
Oeu006040.1 Olea europaea HOM05D004183 ORTHO05D005022 5.5e-247 858.2 921 51.6
SGA_v2.0_scaffold7G03721 Striga asiatica HOM05D004183 ORTHO05D005022 8.8e-237 824.3 923 48.8
Solyc07g008760.4 Solanum lycopersicum HOM05D004183 ORTHO05D005022 1.1e-236 823.9 904 56.4
Sopen07g004700 Solanum pennellii HOM05D004183 ORTHO05D005022 6.9e-234 814.7 920 55.3
Cc03_g10770 Coffea canephora HOM05D004183 ORTHO05D005022 2.7e-222 776.2 924 48.9
CAN.G333.6 Capsicum annuum HOM05D004183 ORTHO05D005022 3.6e-222 775.8 923 54.2
Actinidia11211 Actinidia chinensis HOM05D004183 ORTHO05D005022 1.7e-219 766.9 942 53.6
Dinv04533 Davidia involucrata HOM05D004183 ORTHO05D005022 1.1e-218 764.2 925 46.9
Peaxi162Scf01600g00023 Petunia axillaris HOM05D004183 ORTHO05D005022 1.1e-218 764.2 912 53.8
Nitab4.5_0010834g0010 Nicotiana tabacum HOM05D004183 ORTHO05D005022 3.1e-218 762.7 917 49.9
Nitab4.5_0000617g0040 Nicotiana tabacum HOM05D004183 ORTHO05D005022 1.5e-212 743.8 916 52.6
CSS0046717 Camellia sinensis var. sinensis HOM05D004183 ORTHO05D005022 1.8e-210 736.9 935 51.9
Sed0016560 Sechium edule HOM05D004183 ORTHO05D005022 1.4e-202 710.7 916 44.2
MD10G1031900 Malus domestica HOM05D004183 ORTHO05D005022 4.3e-199 699.1 940 43.8
Medtr3g098060 Medicago truncatula HOM05D004183 ORTHO05D005022 3.0e-197 693.0 929 44.3
Ca_17037_v3 Cicer arietinum L. HOM05D004183 ORTHO05D005022 1.2e-196 691.0 936 44.2
PGR102G1375 Punica granatum HOM05D004183 ORTHO05D005022 1.5e-196 690.6 915 44.2
GSVIVG01000237001 Vitis vinifera HOM05D004183 ORTHO05D005022 2.0e-196 690.3 932 44.4
Psat5g056520 Pisum sativum HOM05D004183 ORTHO05D005022 8.3e-195 684.9 923 43.4
TPR.G7801 Trifolium pratense HOM05D004183 ORTHO05D005022 5.4e-194 682.2 934 43.4
Prupe.2G030300 Prunus persica HOM05D004183 ORTHO05D005022 1.2e-193 681.0 927 49.1
Lj1g0005856 Lotus japonicus HOM05D004183 ORTHO05D005022 2.0e-193 680.2 924 42.5
MELO3C019211.2 Cucumis melo HOM05D004183 ORTHO05D005022 4.6e-193 679.1 919 43.1
Duzib268G1261 Durio zibethinus HOM05D004183 ORTHO05D005022 6.6e-192 675.2 929 43.4
CsaV3_2G035420 Cucumis sativus L. HOM05D004183 ORTHO05D005022 1.1e-191 674.5 921 42.7
FvH4_7g02460 Fragaria vesca HOM05D004183 ORTHO05D005022 4.3e-191 672.5 928 43.8
Nn5g26963 Nelumbo nucifera HOM05D004183 ORTHO05D005022 6.2e-190 668.7 928 42.9
Thecc.07G183400 Theobroma cacao HOM05D004183 ORTHO05D005022 6.2e-190 668.7 916 43.3
Lalb_Chr08g0237701 Lupinus albus HOM05D004183 ORTHO05D005022 1.1e-189 667.9 927 41.7
TWI75G1732 Tripterygium wilfordii HOM05D004183 ORTHO05D005022 3.1e-189 666.4 924 43.4
ClCG06G014020 Citrullus lanatus HOM05D004183 ORTHO05D005022 4.0e-189 666.0 877 44.4
FAN06G5080 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.0e-188 663.7 919 43.5
Glyma.04G204500 Glycine max HOM05D004183 ORTHO05D005022 1.7e-187 660.6 931 42.4
Phvul.009G160200 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 2.2e-187 660.2 918 42.6
RcHm_v2.0_Chr1g0321111 Rosa chinensis HOM05D004183 ORTHO05D005022 2.2e-187 660.2 932 43.0
Gorai.002G109500 Gossypium raimondii HOM05D004183 ORTHO05D005022 2.7e-185 653.3 926 42.0
Rhsim03G0265100 Rhododendron simsii HOM05D004183 ORTHO05D005022 6.0e-185 652.1 941 41.7
Sc24g0002700 Simmondsia chinensis HOM05D004183 ORTHO05D005022 1.0e-184 651.4 928 42.5
Gohir.A01G099200 Gossypium hirsutum HOM05D004183 ORTHO05D005022 6.6e-184 648.7 926 41.6
FAN03G0165 Fragaria x ananassa HOM05D004183 ORTHO05D005022 1.1e-183 647.9 929 42.9
CANSAT78G1267 Cannabis sativa HOM05D004183 ORTHO05D005022 1.9e-183 647.1 928 44.1
Duzib106G0093 Durio zibethinus HOM05D004183 ORTHO05D005022 1.2e-182 644.4 923 42.0
BraA10t44272Z Brassica rapa HOM05D004183 ORTHO05D005022 1.5e-180 637.5 928 41.6
Potri.004G080800 Populus trichocarpa HOM05D004183 ORTHO05D005022 1.5e-180 637.5 919 41.2
Atru.chr3.3380 Acer truncatum HOM05D004183 ORTHO05D005022 5.8e-180 635.6 804 44.7
A10p22130 Brassica napus HOM05D004183 ORTHO05D005022 9.9e-180 634.8 927 41.5
C09p59920 Brassica napus HOM05D004183 ORTHO05D005022 1.3e-179 634.4 927 41.4
BcaB08g36793 Brassica carinata HOM05D004183 ORTHO05D005022 1.7e-179 634.0 920 44.2
CDE11G0898 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 3.7e-179 632.9 940 40.6
BolC9t58828H Brassica oleracea HOM05D004183 ORTHO05D005022 6.4e-179 632.1 930 41.4
EL10Ac8g19353 Beta vulgaris HOM05D004183 ORTHO05D005022 1.1e-178 631.3 915 42.3
Eucgr.H05055 Eucalyptus grandis HOM05D004183 ORTHO05D005022 1.4e-178 630.9 709 49.1
Aqoxy7G00086 Aquilegia oxysepala HOM05D004183 ORTHO05D005022 4.1e-178 629.4 933 42.1
Gohir.D01G083800 Gossypium hirsutum HOM05D004183 ORTHO05D005022 7.1e-178 628.6 926 41.1
THA.LOC104827224 Tarenaya hassleriana HOM05D004183 ORTHO05D005022 1.6e-177 627.5 921 41.8
PSO782G1025 Papaver somniferum HOM05D004183 ORTHO05D005022 2.1e-177 627.1 943 41.6
PSO063G6994 Papaver somniferum HOM05D004183 ORTHO05D005022 1.0e-176 624.8 942 41.3
ATR0810G041 Amborella trichopoda HOM05D004183 ORTHO05D005022 5.2e-173 612.5 939 38.6
Lsat_1_v5_gn_3_54960 Lactuca sativa HOM05D004183 ORTHO05D005022 3.8e-171 606.3 908 43.5
HanXRQChr15g0484541 Helianthus annuus HOM05D004183 ORTHO05D005022 6.4e-171 605.5 909 42.1
C03p09610 Brassica napus HOM05D004183 ORTHO05D005022 1.1e-170 604.7 913 42.9
Thhalv10012633m.g Eutrema salsugineum HOM05D004183 ORTHO05D005022 1.4e-170 604.4 912 44.1
Phvul.009G192300 Phaseolus vulgaris HOM05D004183 ORTHO05D005022 3.2e-170 603.2 933 40.2
Sp6g26960 Schrenkiella parvula HOM05D004183 ORTHO05D005022 4.1e-170 602.8 911 44.2
BolC3t13450H Brassica oleracea HOM05D004183 ORTHO05D005022 2.7e-169 600.1 915 42.8
arahy.Tifrunner.gnm1.ann1.RUK03S Arachis hypogaea HOM05D004183 ORTHO05D005022 4.6e-169 599.4 885 42.1
ECA246G4622 Erigeron canadensis HOM05D004183 ORTHO05D005022 4.6e-169 599.4 755 51.8
arahy.Tifrunner.gnm1.ann1.4S33SI Arachis hypogaea HOM05D004183 ORTHO05D005022 1.5e-167 594.3 881 41.7
Carub.0006s1546 Capsella rubella HOM05D004183 ORTHO05D005022 5.6e-167 592.4 923 41.6
CARHR195930 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.2e-166 591.3 910 41.3
AL6G28330 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 3.6e-166 589.7 915 43.3
FAN10G3177 Fragaria x ananassa HOM05D004183 ORTHO05D005022 2.4e-165 587.0 936 40.6
Sabra04G0053600 Salix brachista HOM05D004183 ORTHO05D005022 3.1e-165 586.6 993 37.8
BcaB01g05214 Brassica carinata HOM05D004183 ORTHO05D005022 9.0e-165 585.1 908 42.6
Manes.10G067101 Manihot esculenta HOM05D004183 ORTHO05D005022 2.4e-162 577.0 675 47.3
Haze_19348 Corylus avellana HOM05D004183 ORTHO05D005022 1.0e-160 571.6 870 41.1
COL.COLO4_19761 Corchorus olitorius HOM05D004183 ORTHO05D005022 3.0e-160 570.1 881 40.2
Aa31LG11G12400 Aethionema arabicum HOM05D004183 ORTHO05D005022 6.6e-160 568.9 941 43.1
AT5G37130 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 4.5e-156 556.2 922 39.7
AUR62027369 Chenopodium quinoa HOM05D004183 ORTHO05D005022 4.6e-153 546.2 716 44.6
Zm00001eb096590 Zea mays HOM05D004183 ORTHO05D005022 8.7e-152 542.0 917 39.8
Ah.09g232030 Amaranthus hybridus HOM05D004183 ORTHO05D005022 9.6e-151 538.5 735 44.5
DCAR_009033 Daucus carota HOM05D004183 ORTHO05D005022 1.4e-149 534.6 641 48.8
RcHm_v2.0_Chr1g0320601 Rosa chinensis HOM05D004183 ORTHO05D005022 1.8e-149 534.3 707 44.4
A03p08250 Brassica napus HOM05D004183 ORTHO05D005022 1.2e-148 531.6 686 46.9
Os07g0455100 Oryza sativa ssp. japonica HOM05D004183 ORTHO05D005022 8.4e-147 525.4 908 39.1
BcaC04g18812 Brassica carinata HOM05D004183 ORTHO05D005022 1.4e-146 524.6 924 38.3
AT5G17270 Arabidopsis thaliana HOM05D004183 ORTHO05D005022 9.3e-146 521.9 673 48.6
vmacro06007 Vaccinium macrocarpon HOM05D004183 ORTHO05D005022 3.0e-144 516.9 1062 34.4
CiPaw.15G184500 Carya illinoinensis HOM05D004183 ORTHO05D005022 8.4e-139 498.8 496 53.2
BraA03t10145Z Brassica rapa HOM05D004183 ORTHO05D005022 2.0e-132 477.6 902 38.5
Ciclev10033903m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.8e-131 473.4 556 48.2
AL6G28350 Arabidopsis lyrata HOM05D004183 ORTHO05D005022 7.2e-122 442.6 847 38.1
Mapoly0026s0116 Marchantia polymorpha HOM05D004183 ORTHO05D005022 1.0e-120 438.7 961 35.6
Ciclev10030817m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.8e-115 420.2 898 35.4
AUR62031288 Chenopodium quinoa HOM05D004183 ORTHO05D005022 2.6e-111 407.5 479 46.8
Ciclev10031527m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.3e-110 402.9 445 49.4
VMungo1309G0357 Vigna mungo HOM05D004183 ORTHO05D005022 4.1e-109 400.2 930 31.6
VMungo1309G2786 Vigna mungo HOM05D004183 ORTHO05D005022 9.4e-98 362.5 425 47.3
Pp3c1_12830 Physcomitrium patens HOM05D004183 ORTHO05D005022 2.6e-95 354.4 932 35.2
SHI30096 Sapria himalayana HOM05D004183 ORTHO05D005022 1.1e-93 349.0 918 31.2
HPP92_011016 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.7e-92 344.4 456 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1225 Anthoceros agrestis HOM05D004183 ORTHO05D005022 2.0e-87 328.2 436 42.7
VMungo1309G0778 Vigna mungo HOM05D004183 ORTHO05D005022 3.9e-75 287.3 475 39.2
Cpa.g.sc178.29 Carica papaya HOM05D004183 ORTHO05D005022 1.5e-71 275.4 398 42.7
Hund12628 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.1e-69 269.2 193 66.8
Hund27690 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.1e-69 269.2 193 66.8
Glyma.06G161100 Glycine max HOM05D004183 ORTHO05D005022 1.9e-69 268.5 470 37.4
Ciclev10033525m.g Citrus clementina HOM05D004183 ORTHO05D005022 3.0e-67 261.2 479 35.9
RcHm_v2.0_Chr1g0319751 Rosa chinensis HOM05D004183 ORTHO05D005022 2.1e-65 255.0 356 43.0
RcHm_v2.0_Chr1g0320041 Rosa chinensis HOM05D004183 ORTHO05D005022 1.2e-63 249.2 486 35.6
CBR_g19343 Chara braunii HOM05D004183 ORTHO05D005022 2.1e-60 238.4 392 37.5
MCO15G220 Micromonas commoda HOM05D004183 ORTHO05D005022 1.9e-53 215.3 405 32.8
AUR62031284 Chenopodium quinoa HOM05D004183 ORTHO05D005022 1.2e-52 212.6 470 34.9
Cre09.g401700 Chlamydomonas reinhardtii HOM05D004183 ORTHO05D005022 1.1e-50 206.1 465 30.1
RcHm_v2.0_Chr1g0320901 Rosa chinensis HOM05D004183 ORTHO05D005022 1.5e-50 205.7 330 40.3
Ciclev10031844m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.6e-49 202.2 240 47.5
RcHm_v2.0_Chr1g0319801 Rosa chinensis HOM05D004183 ORTHO05D005022 8.1e-49 199.9 182 56.0
CARHR154510 Cardamine hirsuta HOM05D004183 ORTHO05D005022 1.5e-47 195.7 240 45.8
COL.COLO4_14587 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.5e-47 195.7 477 31.9
SMO147G0329 Selaginella moellendorffii HOM05D004183 ORTHO05D005022 1.5e-47 195.7 391 48.3
RcHm_v2.0_Chr1g0319811 Rosa chinensis HOM05D004183 ORTHO05D005022 3.8e-46 191.0 366 35.0
RcHm_v2.0_Chr1g0320781 Rosa chinensis HOM05D004183 ORTHO05D005022 3.8e-46 191.0 230 47.4
CARHR154500 Cardamine hirsuta HOM05D004183 ORTHO05D005022 8.4e-46 189.9 216 45.8
SEGI_18489 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 6.6e-43 180.3 299 38.1
BcaB01g04945 Brassica carinata HOM05D004183 ORTHO05D005022 8.7e-43 179.9 343 38.5
Ciclev10033738m.g Citrus clementina HOM05D004183 ORTHO05D005022 1.5e-42 179.1 420 32.9
PRCOL_00002789 Prasinoderma coloniale HOM05D004183 ORTHO05D005022 5.3e-40 170.6 382 31.9
SEGI_41562 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 2.2e-38 165.2 137 54.7
Ciclev10033659m.g Citrus clementina HOM05D004183 ORTHO05D005022 4.2e-37 161.0 465 28.0
Ciclev10033120m.g Citrus clementina HOM05D004183 ORTHO05D005022 7.4e-34 150.2 106 65.1
Cpa.g.sc178.30 Carica papaya HOM05D004183 ORTHO05D005022 1.3e-33 149.4 281 35.9
Hund12629 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.1e-26 126.3 176 40.3
Hund27689 Selenicereus undatus HOM05D004183 ORTHO05D005022 1.1e-26 126.3 176 40.3
RcHm_v2.0_Chr1g0319861 Rosa chinensis HOM05D004183 ORTHO05D005022 7.4e-26 123.6 193 38.9
Cfa027322 Carpinus fangiana HOM05D004183 ORTHO05D005022 1.8e-19 102.4 475 24.2
RcHm_v2.0_Chr1g0320761 Rosa chinensis HOM05D004183 ORTHO05D005022 3.0e-19 101.7 106 50.0
MBI08_g38580_MAGBIO Magnolia biondii HOM05D004183 ORTHO05D005022 3.9e-19 101.3 78 66.7
CARHR154520 Cardamine hirsuta HOM05D004183 ORTHO05D005022 4.3e-18 97.8 161 36.0
BcaB01g04944 Brassica carinata HOM05D004183 ORTHO05D005022 5.7e-18 97.4 183 37.7
RcHm_v2.0_Chr1g0320911 Rosa chinensis HOM05D004183 ORTHO05D005022 5.7e-18 97.4 164 37.8
RcHm_v2.0_Chr1g0319761 Rosa chinensis HOM05D004183 ORTHO05D005022 1.6e-17 95.9 164 37.2
HPP92_027571 Vanilla planifolia HOM05D004183 ORTHO05D005022 2.8e-17 95.1 77 59.7
CBR_g19342 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-16 93.2 138 37.0
Ciclev10032594m.g Citrus clementina HOM05D004183 ORTHO05D005022 6.1e-12 77.4 252 30.2
COL.COLO4_14589 Corchorus olitorius HOM05D004183 ORTHO05D005022 1.0e-11 76.6 197 31.5
SEGI_41292 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 1.4e-11 76.3 203 32.0
CDE09G0586 Ceratophyllum demersum HOM05D004183 ORTHO05D005022 8.2e-09 67.0 75 42.7
BcaC08g45519 Brassica carinata HOM05D004183 ORTHO05D005022 1.0e-06 60.1 105 32.4
SEGI_06721 Sequoiadendron giganteum HOM05D004183 ORTHO05D005022 8.5e-06 57.0 125 36.0


User provided reference genes

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