Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 5.9e-192 674.1 355 100.0
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 1.8e-127 459.9 358 71.2
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 7.4e-126 454.5 359 70.2
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 7.6e-123 444.5 354 68.6
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 1.5e-118 430.3 370 64.1
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 2.5e-118 429.5 362 65.2
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 3.3e-118 429.1 338 68.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 2.5e-113 412.9 349 64.2
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 7.1e-113 411.4 344 64.5
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 1.6e-112 410.2 349 64.2
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 3.9e-111 405.6 341 64.5
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 5.1e-111 405.2 355 62.3
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 2.2e-109 399.8 412 55.8
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.8e-108 396.7 337 63.5
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 4.6e-104 382.1 338 60.7
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 5.1e-103 378.6 339 59.0
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 4.3e-102 375.6 338 59.8
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 5.7e-102 375.2 359 58.8
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 7.4e-102 374.8 336 60.1
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 9.7e-102 374.4 339 60.2
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.3e-101 374.0 336 59.8
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 1.3e-101 374.0 334 61.4
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.2e-101 373.2 344 59.6
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 6.3e-101 371.7 338 60.4
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 8.2e-101 371.3 336 59.8
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 1.4e-100 370.5 358 56.7
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.4e-100 370.5 343 59.5
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 5.3e-100 368.6 335 59.7
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 5.3e-100 368.6 344 57.6
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 6.9e-100 368.2 352 57.1
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 6.9e-100 368.2 344 58.4
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 9.1e-100 367.9 359 57.1
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 3.4e-99 365.9 348 58.0
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 4.5e-99 365.5 334 59.9
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.9e-99 365.2 336 58.9
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 1.0e-98 364.4 348 56.9
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.0e-98 364.4 339 59.0
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 1.3e-98 364.0 336 58.9
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 5.0e-98 362.1 336 57.4
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 1.1e-97 360.9 339 57.8
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 3.2e-97 359.4 351 56.1
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 4.2e-97 359.0 339 58.7
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 5.5e-97 358.6 369 54.5
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.2e-96 357.5 368 56.2
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 1.2e-96 357.5 396 52.3
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.6e-96 357.1 304 65.8
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 2.1e-96 356.7 336 56.5
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.6e-96 355.9 336 58.6
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 4.7e-96 355.5 355 56.6
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 4.7e-96 355.5 335 57.3
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 1.4e-95 354.0 353 55.5
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 1.8e-95 353.6 304 65.1
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 3.0e-95 352.8 336 54.2
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 3.0e-95 352.8 339 57.2
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 8.8e-95 351.3 336 57.4
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.1e-94 350.9 312 62.2
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 2.0e-94 350.1 340 55.9
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 4.4e-94 349.0 335 57.6
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 4.4e-94 349.0 343 55.7
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 5.7e-94 348.6 338 58.0
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 5.7e-94 348.6 335 57.3
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 6.3e-93 345.1 366 52.2
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 7.0e-92 341.7 340 55.6
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.5e-91 340.5 341 52.5
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 2.6e-91 339.7 335 54.3
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 5.0e-90 335.5 342 54.7
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.1e-89 334.3 346 53.8
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 5.5e-89 332.0 343 54.2
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 5.5e-89 332.0 357 51.0
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 7.2e-89 331.6 370 51.4
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 7.2e-89 331.6 343 54.2
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 9.4e-89 331.3 359 53.5
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 1.2e-88 330.9 351 53.6
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.6e-88 330.5 341 54.5
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 6.1e-88 328.6 341 54.3
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.0e-87 327.8 452 45.4
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 3.0e-87 326.2 342 51.2
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 3.0e-87 326.2 341 53.7
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 3.0e-87 326.2 343 52.2
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.2e-87 325.5 336 55.4
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 6.7e-87 325.1 465 44.1
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 8.8e-87 324.7 334 54.8
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 1.1e-86 324.3 351 51.3
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 5.7e-86 322.0 341 53.1
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 7.4e-86 321.6 351 51.3
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 9.7e-86 321.2 278 63.7
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 3.7e-85 319.3 293 60.4
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 1.1e-84 317.8 378 49.2
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.4e-84 317.4 366 50.3
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 5.3e-84 315.5 340 53.5
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 7.0e-84 315.1 343 52.5
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 3.5e-83 312.8 296 57.8
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 5.9e-83 312.0 314 54.1
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 8.5e-82 308.1 310 56.1
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 9.4e-81 304.7 314 57.3
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 1.2e-80 304.3 252 69.4
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 2.7e-80 303.1 298 56.7
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 6.1e-80 302.0 332 51.2
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 1.0e-79 301.2 367 49.0
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.8e-79 300.4 313 53.7
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.2e-78 297.7 331 52.9
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 2.0e-78 297.0 309 55.7
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.5e-78 295.0 300 56.7
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 1.7e-77 293.9 329 51.1
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.7e-77 292.7 300 56.0
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 3.7e-77 292.7 426 44.1
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 1.1e-76 291.2 300 54.3
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 4.1e-76 289.3 323 52.6
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 7.7e-75 285.0 258 61.2
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 1.7e-74 283.9 348 46.3
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.9e-73 280.4 314 51.0
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 4.2e-73 279.3 552 37.1
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 4.2e-73 279.3 271 56.5
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 5.5e-73 278.9 329 50.5
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 3.0e-71 273.1 305 50.8
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 5.7e-70 268.9 305 51.8
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.7e-66 257.3 224 61.2
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.7e-66 257.3 339 43.7
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 4.2e-65 252.7 307 48.5
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 9.8e-62 241.5 356 41.6
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 9.8e-62 241.5 349 43.8
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 8.6e-58 228.4 253 52.6
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 7.3e-57 225.3 328 44.8
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 9.2e-52 208.4 187 62.6
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 1.5e-49 201.1 153 66.0
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 1.2e-46 191.4 154 65.6
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 6.4e-45 185.7 160 61.9
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 5.4e-44 182.6 127 73.2
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.7e-43 180.3 201 49.8
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 3.0e-42 176.8 320 37.2
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 3.3e-41 173.3 362 34.0
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 9.5e-41 171.8 270 43.0
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 1.8e-39 167.5 339 34.2
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.0e-38 164.1 224 46.9
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 7.8e-35 152.1 171 51.5
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 1.7e-34 151.0 295 35.9
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.6e-34 149.1 133 58.6
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 2.8e-32 143.7 119 63.0
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 2.8e-32 143.7 119 63.0
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.9e-28 131.0 104 67.3
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 2.4e-28 130.6 236 40.7
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.1e-25 121.7 121 55.4
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-24 117.5 152 46.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 3.1e-23 113.6 105 58.1
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 6.9e-23 112.5 256 37.1
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 9.3e-20 102.1 116 49.1
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 9.3e-20 102.1 115 47.8
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.6e-16 91.3 354 26.6
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.0e-14 84.3 115 41.7
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 3.2e-12 77.0 90 48.9
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 9.0e-07 58.9 70 45.7
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 1.5e-06 58.2 47 59.6
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.5e-06 58.2 253 22.9
BolC4t26969H Brassica oleracea HOM05D004482 ORTHO05D005212 2.6e-06 57.4 64 50.0
BcaC02g08439 Brassica carinata HOM05D004482 ORTHO05D005212 5.8e-06 56.2 70 44.3
C04p54180 Brassica napus HOM05D004482 ORTHO05D005212 7.6e-06 55.8 64 48.4


User provided reference genes

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