Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g4905 Utricularia gibba HOM05D004775 ORTHO05D005351 1.0e-133 479.9 224 100.0
unitig_578.g16108 Utricularia gibba HOM05D004775 ORTHO05D005351 2.8e-99 365.5 235 74.9
MSTRG.932 Avicennia marina HOM05D004775 ORTHO05D005351 3.7e-91 338.6 207 77.8
MSTRG.24993 Avicennia marina HOM05D004775 ORTHO05D005351 1.2e-89 333.6 208 77.4
Dinv42587 Davidia involucrata HOM05D004775 ORTHO05D005351 9.8e-84 313.9 198 74.7
Peaxi162Scf00962g00039 Petunia axillaris HOM05D004775 ORTHO05D005351 2.9e-83 312.4 201 72.6
Nitab4.5_0018050g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 3.2e-82 308.9 188 75.5
Solyc04g076670.3 Solanum lycopersicum HOM05D004775 ORTHO05D005351 9.2e-82 307.4 198 73.2
Sopen04g030390 Solanum pennellii HOM05D004775 ORTHO05D005351 9.2e-82 307.4 198 73.2
CSS0014871 Camellia sinensis var. sinensis HOM05D004775 ORTHO05D005351 3.0e-80 302.4 196 73.5
Migut.C00072 Erythranthe guttata HOM05D004775 ORTHO05D005351 5.0e-80 301.6 212 69.3
Actinidia10268 Actinidia chinensis HOM05D004775 ORTHO05D005351 6.6e-80 301.2 205 71.7
Oeu038164.1 Olea europaea HOM05D004775 ORTHO05D005351 6.6e-80 301.2 202 70.8
Nitab4.5_0003184g0020 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.1e-79 300.4 198 72.2
Atru.chr13.955 Acer truncatum HOM05D004775 ORTHO05D005351 2.5e-79 299.3 198 71.2
CAN.G723.7 Capsicum annuum HOM05D004775 ORTHO05D005351 3.3e-79 298.9 198 70.2
Gohir.A05G216900 Gossypium hirsutum HOM05D004775 ORTHO05D005351 9.5e-79 297.4 197 72.1
Cc10_g08310 Coffea canephora HOM05D004775 ORTHO05D005351 2.1e-78 296.2 198 70.7
CAN.G1104.13 Capsicum annuum HOM05D004775 ORTHO05D005351 8.0e-78 294.3 206 69.9
Gohir.D05G220600 Gossypium hirsutum HOM05D004775 ORTHO05D005351 8.0e-78 294.3 197 70.6
PGR042G0432 Punica granatum HOM05D004775 ORTHO05D005351 8.0e-78 294.3 185 71.9
CANSAT25G1480 Cannabis sativa HOM05D004775 ORTHO05D005351 1.0e-77 293.9 190 72.1
TWI56G0975 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 1.0e-77 293.9 195 71.3
CiPaw.07G162400 Carya illinoinensis HOM05D004775 ORTHO05D005351 1.4e-77 293.5 199 70.9
Thecc.08G074700 Theobroma cacao HOM05D004775 ORTHO05D005351 1.4e-77 293.5 198 70.7
Duzib093G0042 Durio zibethinus HOM05D004775 ORTHO05D005351 1.8e-77 293.1 198 69.7
COL.COLO4_35296 Corchorus olitorius HOM05D004775 ORTHO05D005351 2.3e-77 292.7 198 70.7
Duzib116G0735 Durio zibethinus HOM05D004775 ORTHO05D005351 2.3e-77 292.7 187 73.3
Manes.18G057500 Manihot esculenta HOM05D004775 ORTHO05D005351 2.3e-77 292.7 190 69.5
Hma1.2p1_0125F.1_g058660 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 5.2e-77 291.6 187 72.7
Gohir.D01G113700 Gossypium hirsutum HOM05D004775 ORTHO05D005351 6.8e-77 291.2 193 71.0
TWI12G1154 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 6.8e-77 291.2 189 70.4
Glyma.14G183500 Glycine max HOM05D004775 ORTHO05D005351 8.9e-77 290.8 210 66.7
Lalb_Chr17g0344651 Lupinus albus HOM05D004775 ORTHO05D005351 1.2e-76 290.4 194 66.5
MD15G1389500 Malus domestica HOM05D004775 ORTHO05D005351 2.0e-76 289.7 188 69.1
QL12p039787 Quercus lobata HOM05D004775 ORTHO05D005351 2.0e-76 289.7 190 70.5
Gohir.A01G125800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 3.4e-76 288.9 184 72.3
Glyma.02G216500 Glycine max HOM05D004775 ORTHO05D005351 4.4e-76 288.5 203 67.0
Gorai.002G138100 Gossypium raimondii HOM05D004775 ORTHO05D005351 5.8e-76 288.1 184 72.3
TWI36G1537 Tripterygium wilfordii HOM05D004775 ORTHO05D005351 5.8e-76 288.1 189 70.4
LjContig00408g0019215 Lotus japonicus HOM05D004775 ORTHO05D005351 7.5e-76 287.7 211 65.4
Ciclev10002525m.g Citrus clementina HOM05D004775 ORTHO05D005351 1.7e-75 286.6 188 71.3
Gorai.009G227600 Gossypium raimondii HOM05D004775 ORTHO05D005351 1.7e-75 286.6 197 70.6
Duzib041G0637 Durio zibethinus HOM05D004775 ORTHO05D005351 2.9e-75 285.8 227 63.9
arahy.Tifrunner.gnm1.ann1.ZY5S91 Arachis hypogaea HOM05D004775 ORTHO05D005351 4.9e-75 285.0 192 69.8
Sc26g0003070 Simmondsia chinensis HOM05D004775 ORTHO05D005351 4.9e-75 285.0 200 66.0
Prupe.1G538600 Prunus persica HOM05D004775 ORTHO05D005351 6.4e-75 284.6 187 69.5
TPR.G27047 Trifolium pratense HOM05D004775 ORTHO05D005351 6.4e-75 284.6 198 66.2
MELO3C003503.2 Cucumis melo HOM05D004775 ORTHO05D005351 8.3e-75 284.3 195 66.7
CsaV3_3G048130 Cucumis sativus L. HOM05D004775 ORTHO05D005351 8.3e-75 284.3 194 67.0
Potri.002G109800 Populus trichocarpa HOM05D004775 ORTHO05D005351 8.3e-75 284.3 192 70.3
Sed0023619 Sechium edule HOM05D004775 ORTHO05D005351 8.3e-75 284.3 193 65.3
Sed0025083 Sechium edule HOM05D004775 ORTHO05D005351 8.3e-75 284.3 204 65.2
Gohir.A06G030500 Gossypium hirsutum HOM05D004775 ORTHO05D005351 2.4e-74 282.7 185 69.2
Lalb_Chr11g0064841 Lupinus albus HOM05D004775 ORTHO05D005351 3.2e-74 282.3 197 64.0
TAR381G0646 Trochodendron aralioides HOM05D004775 ORTHO05D005351 3.2e-74 282.3 189 68.3
Psat2g064440 Pisum sativum HOM05D004775 ORTHO05D005351 5.4e-74 281.6 201 65.2
Gohir.D06G029800 Gossypium hirsutum HOM05D004775 ORTHO05D005351 7.0e-74 281.2 185 69.2
Nn5g29801 Nelumbo nucifera HOM05D004775 ORTHO05D005351 7.0e-74 281.2 188 67.6
Gorai.010G032800 Gossypium raimondii HOM05D004775 ORTHO05D005351 9.2e-74 280.8 185 68.6
Ca_15537_v3 Cicer arietinum L. HOM05D000583 ORTHO05D000442 4.6e-73 278.5 199 65.3
Solyc12g088070.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 4.6e-73 278.5 189 67.7
DCAR_020031 Daucus carota HOM05D004775 ORTHO05D005351 7.8e-73 277.7 205 66.3
MD08G1206200 Malus domestica HOM05D004775 ORTHO05D005351 1.3e-72 276.9 178 70.2
Medtr5g066840 Medicago truncatula HOM05D004775 ORTHO05D005351 3.0e-72 275.8 199 63.3
Psat0s3268g0200 Pisum sativum HOM05D004775 ORTHO05D005351 3.9e-72 275.4 188 67.0
TAR625G1011 Trochodendron aralioides HOM05D004775 ORTHO05D005351 3.9e-72 275.4 190 63.7
Cpa.g.sc177.17 Carica papaya HOM05D004775 ORTHO05D005351 2.5e-71 272.7 186 69.9
RcHm_v2.0_Chr7g0233601 Rosa chinensis HOM05D004775 ORTHO05D005351 2.5e-71 272.7 214 65.4
Sopen12g030090 Solanum pennellii HOM05D004775 ORTHO05D005351 2.5e-71 272.7 190 67.4
Dinv44879 Davidia involucrata HOM05D000583 ORTHO05D000442 9.5e-71 270.8 163 74.8
TPR.G12363 Trifolium pratense HOM05D004775 ORTHO05D005351 9.5e-71 270.8 192 65.1
FAN08G1925 Fragaria x ananassa HOM05D004775 ORTHO05D005351 6.2e-70 268.1 208 63.9
THA.LOC104823690 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 6.2e-70 268.1 186 64.5
ECA246G4228 Erigeron canadensis HOM05D004775 ORTHO05D005351 8.1e-70 267.7 185 64.9
THA.LOC104816787 Tarenaya hassleriana HOM05D004775 ORTHO05D005351 1.8e-69 266.5 185 64.3
FAN18G1173 Fragaria x ananassa HOM05D004775 ORTHO05D005351 3.1e-69 265.8 208 63.5
Medtr3g111440 Medicago truncatula HOM05D004775 ORTHO05D005351 2.0e-68 263.1 197 61.9
Ca_05476_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 4.4e-68 261.9 197 61.9
Ca_30556_v3 Cicer arietinum L. HOM05D004775 ORTHO05D005351 4.4e-68 261.9 197 61.9
Carub.0001s0930 Capsella rubella HOM05D004775 ORTHO05D005351 7.5e-68 261.2 185 63.8
AL1G20520 Arabidopsis lyrata HOM05D004775 ORTHO05D005351 1.7e-67 260.0 185 63.2
Thhalv10008829m.g Eutrema salsugineum HOM05D004775 ORTHO05D005351 2.2e-67 259.6 186 64.0
CARHR009970 Cardamine hirsuta HOM05D004775 ORTHO05D005351 3.7e-67 258.8 185 62.7
Aqoxy6G00652 Aquilegia oxysepala HOM05D004775 ORTHO05D005351 6.4e-67 258.1 187 64.2
PSO532G0015 Papaver somniferum HOM05D004775 ORTHO05D005351 1.1e-66 257.3 190 64.2
PSO541G5225 Papaver somniferum HOM05D004775 ORTHO05D005351 1.1e-66 257.3 190 63.7
GSVIVG01009216001 Vitis vinifera HOM05D004775 ORTHO05D005351 2.4e-66 256.1 193 62.2
vmacro21362 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 3.2e-66 255.8 266 52.6
BolC5t29556H Brassica oleracea HOM05D004775 ORTHO05D005351 7.1e-66 254.6 184 61.4
FAN04G2969 Fragaria x ananassa HOM05D004775 ORTHO05D005351 7.1e-66 254.6 208 61.5
BolC8t48959H Brassica oleracea HOM05D004775 ORTHO05D005351 2.1e-65 253.1 185 62.2
BcaC07g38533 Brassica carinata HOM05D004775 ORTHO05D005351 3.5e-65 252.3 185 62.2
HanXRQChr02g0046001 Helianthus annuus HOM05D004775 ORTHO05D005351 3.5e-65 252.3 188 59.0
A08p34290 Brassica napus HOM05D004775 ORTHO05D005351 6.0e-65 251.5 185 61.6
BraA08t35340Z Brassica rapa HOM05D004775 ORTHO05D005351 6.0e-65 251.5 185 62.2
PSO541G4289 Papaver somniferum HOM05D004775 ORTHO05D005351 6.0e-65 251.5 190 63.7
AT1G09920 Arabidopsis thaliana HOM05D004775 ORTHO05D005351 7.8e-65 251.1 185 61.6
Sabra02G0086400 Salix brachista HOM05D004775 ORTHO05D005351 7.8e-65 251.1 264 50.4
BcaC05g24832 Brassica carinata HOM05D004775 ORTHO05D005351 1.7e-64 250.0 185 60.5
Aa31LG1G4980 Aethionema arabicum HOM05D000583 ORTHO05D000442 2.3e-64 249.6 186 61.3
ECA247G3351 Erigeron canadensis HOM05D004775 ORTHO05D005351 2.3e-64 249.6 185 63.8
Lsat_1_v5_gn_6_107340 Lactuca sativa HOM05D004775 ORTHO05D005351 3.9e-64 248.8 185 64.9
Actinidia19256 Actinidia chinensis HOM05D004775 ORTHO05D005351 5.1e-64 248.4 143 76.9
CAN.G1104.12 Capsicum annuum HOM05D004775 ORTHO05D005351 8.6e-64 247.7 199 58.8
Sp1g08560 Schrenkiella parvula HOM05D004775 ORTHO05D005351 1.5e-63 246.9 181 61.9
C05p08040 Brassica napus HOM05D004775 ORTHO05D005351 1.2e-62 243.8 178 61.8
C08p13270 Brassica napus HOM05D004775 ORTHO05D005351 1.6e-62 243.4 179 62.6
A06p06630 Brassica napus HOM05D004775 ORTHO05D005351 4.7e-62 241.9 178 61.2
BraA06t23877Z Brassica rapa HOM05D004775 ORTHO05D005351 4.7e-62 241.9 178 61.2
GSVIVG01009218001 Vitis vinifera HOM05D004775 ORTHO05D005351 4.4e-60 235.3 202 57.9
ClCG11G014720 Citrullus lanatus HOM05D004775 ORTHO05D005351 1.3e-59 233.8 157 69.4
Phvul.008G183600 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 3.7e-59 232.3 160 68.1
Nitab4.5_0000354g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 8.4e-59 231.1 169 63.9
Phvul.009G145000 Phaseolus vulgaris HOM05D004775 ORTHO05D005351 1.4e-58 230.3 188 58.5
Solyc12g088060.2 Solanum lycopersicum HOM05D004775 ORTHO05D005351 7.1e-58 228.0 281 44.8
Zm00001eb017320 Zea mays HOM05D004775 ORTHO05D005351 3.5e-57 225.7 194 53.6
unitig_37.g13069 Utricularia gibba HOM05D000316 ORTHO05D005351 1.1e-55 220.7 188 60.6
Glyma.06G092700 Glycine max HOM05D004775 ORTHO05D005351 1.9e-55 219.9 198 54.5
PGSC0003DMG402002053 Solanum tuberosum HOM05D004775 ORTHO05D005351 4.3e-55 218.8 199 54.8
Nitab4.5_0000885g0090 Nicotiana tabacum HOM05D004775 ORTHO05D005351 1.2e-54 217.2 178 60.7
ATR0800G163 Amborella trichopoda HOM05D004775 ORTHO05D005351 3.6e-54 215.7 159 59.1
CDE01G0193 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 1.8e-53 213.4 189 54.0
Lsat_1_v5_gn_1_840 Lactuca sativa HOM05D004775 ORTHO05D005351 2.4e-53 213.0 210 52.4
Hma1.2p1_0010F.1_g006440 Hydrangea macrophylla HOM05D004775 ORTHO05D005351 3.1e-53 212.6 135 73.3
CDE02G4408 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 6.8e-53 211.5 184 54.3
SEGI_14572 Sequoiadendron giganteum HOM05D004775 ORTHO05D005351 8.9e-53 211.1 191 50.8
Eucgr.F00443 Eucalyptus grandis HOM05D004775 ORTHO05D005351 1.2e-52 210.7 185 56.2
Zm00001eb110680 Zea mays HOM05D004775 ORTHO05D005351 6.4e-51 204.9 196 48.0
EL10Ac1g00475 Beta vulgaris HOM05D004775 ORTHO05D005351 3.2e-50 202.6 191 53.4
Zm00001eb394470 Zea mays HOM05D004775 ORTHO05D005351 3.2e-50 202.6 188 53.7
Os03g0356652 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 9.3e-50 201.1 192 51.6
MBI16_g12296_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 6.0e-49 198.4 152 61.2
HanXRQChr05g0163501 Helianthus annuus HOM05D004775 ORTHO05D005351 8.7e-48 194.5 160 57.5
HanXRQChr10g0277731 Helianthus annuus HOM05D004775 ORTHO05D005351 1.5e-47 193.7 151 60.9
Hund17253 Selenicereus undatus HOM05D004775 ORTHO05D005351 1.5e-47 193.7 166 57.8
VMungo1309G0719 Vigna mungo HOM05D004775 ORTHO05D005351 4.3e-47 192.2 183 50.3
Os07g0657500 Oryza sativa ssp. japonica HOM05D004775 ORTHO05D005351 1.4e-45 187.2 182 46.7
VMungo0647G0779 Vigna mungo HOM05D004775 ORTHO05D005351 1.4e-45 187.2 137 67.2
Nn1g05655 Nelumbo nucifera HOM05D004775 ORTHO05D005351 9.0e-45 184.5 99 76.8
Haze_22493 Corylus avellana HOM05D004775 ORTHO05D005351 1.3e-43 180.6 181 51.9
FvH4_5g34100 Fragaria vesca HOM05D004775 ORTHO05D005351 1.4e-42 177.2 144 61.8
Mapoly0004s0283 Marchantia polymorpha HOM05D004775 ORTHO05D005351 1.9e-42 176.8 201 41.8
Manes.12G122400 Manihot esculenta HOM05D004775 ORTHO05D005351 4.3e-39 165.6 189 43.4
BcaB03g13545 Brassica carinata HOM05D004775 ORTHO05D005351 1.1e-37 161.0 131 58.0
Sopen12g030080 Solanum pennellii HOM05D000583 ORTHO05D000442 7.6e-36 154.8 144 54.2
AUR62019121 Chenopodium quinoa HOM05D004775 ORTHO05D005351 1.8e-32 143.7 196 42.3
AUR62014379 Chenopodium quinoa HOM05D004775 ORTHO05D005351 3.0e-32 142.9 190 42.6
SGA_v2.0_scaffold74G24544 Striga asiatica HOM05D004775 ORTHO05D005351 3.9e-32 142.5 202 42.6
BraA09t41874Z Brassica rapa HOM05D000348 ORTHO05D000244 6.7e-32 141.7 184 41.8
BcaC07g41856 Brassica carinata HOM05D004775 ORTHO05D005351 1.1e-31 141.0 184 41.8
BolC8t52458H Brassica oleracea HOM05D000348 ORTHO05D000244 1.1e-31 141.0 184 41.8
MBI05_g43456_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 3.5e-25 119.4 89 58.4
MBI10_g33158_MAGBIO Magnolia biondii HOM05D004775 ORTHO05D005351 1.9e-23 113.6 88 58.0
vmacro22764 Vaccinium macrocarpon HOM05D004775 ORTHO05D005351 7.2e-18 95.1 67 67.2
unitig_26.g9928 Utricularia gibba HOM05D006348 ORTHO05D008261 1.4e-13 80.9 169 28.4
Dinv36973 Davidia involucrata HOM05D004775 ORTHO05D005351 1.4e-10 70.9 156 33.3
Medtr3g099560 Medicago truncatula HOM05D004775 ORTHO05D005351 4.2e-10 69.3 39 74.4
CDE07G0871 Ceratophyllum demersum HOM05D004775 ORTHO05D005351 5.5e-10 68.9 49 53.1
Nn1g03434 Nelumbo nucifera HOM05D006348 ORTHO05D008261 1.6e-09 67.4 168 26.8
Zm00001eb329620 Zea mays HOM05D004775 ORTHO05D005351 6.1e-09 65.5 119 32.8
Glyma.04G091000 Glycine max HOM05D004775 ORTHO05D005351 3.7e-06 56.2 48 62.5


User provided reference genes

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