Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g4877 Utricularia gibba HOM05D003282 ORTHO05D003637 1.7e-45 185.7 95 100.0
unitig_578.g16150 Utricularia gibba HOM05D003282 ORTHO05D003637 8.0e-27 123.6 92 68.5
MSTRG.1025 Avicennia marina HOM05D003282 ORTHO05D003637 9.1e-15 83.6 76 52.6
SalBow7G2612 Salvia bowleyana HOM05D003282 ORTHO05D003637 2.0e-14 82.4 70 55.7
Oeu038172.1 Olea europaea HOM05D003282 ORTHO05D003637 4.5e-14 81.3 69 56.5
Actinidia08246 Actinidia chinensis HOM05D003282 ORTHO05D003637 5.0e-13 77.8 66 56.1
MSTRG.25035 Avicennia marina HOM05D003282 ORTHO05D003637 5.0e-13 77.8 82 46.3
Oeu053615.1 Olea europaea HOM05D003282 ORTHO05D003637 5.0e-13 77.8 77 46.8
Oeu053619.1 Olea europaea HOM05D003282 ORTHO05D003637 5.0e-13 77.8 69 52.2
Oeu053620.1 Olea europaea HOM05D003282 ORTHO05D003637 5.0e-13 77.8 69 52.2
Migut.C00484 Erythranthe guttata HOM05D003282 ORTHO05D003637 1.5e-12 76.3 62 56.5
Migut.N02784 Erythranthe guttata HOM05D003282 ORTHO05D003637 1.9e-12 75.9 82 47.6
CAN.G724.28 Capsicum annuum HOM05D003282 ORTHO05D003637 3.2e-12 75.1 70 54.3
Peaxi162Scf00081g00214 Petunia axillaris HOM05D003282 ORTHO05D003637 4.2e-12 74.7 88 46.6
SalBow2G2343 Salvia bowleyana HOM05D003282 ORTHO05D003637 4.2e-12 74.7 87 41.4
Lj4C71T11 Lonicera japonica HOM05D003282 ORTHO05D003637 5.5e-12 74.3 62 56.5
Nitab4.5_0002484g0080 Nicotiana tabacum HOM05D003282 ORTHO05D003637 5.5e-12 74.3 73 52.1
Nitab4.5_0004654g0010 Nicotiana tabacum HOM05D003282 ORTHO05D003637 1.2e-11 73.2 66 56.1
Oeu037484.1 Olea europaea HOM05D003282 ORTHO05D003637 2.1e-11 72.4 71 49.3
SGA_v2.0_scaffold238G43958 Striga asiatica HOM05D003282 ORTHO05D003637 2.1e-11 72.4 58 55.2
Lsat_1_v5_gn_1_24481 Lactuca sativa HOM05D003282 ORTHO05D003637 3.6e-11 71.6 81 49.4
Glyma.14G089021 Glycine max HOM05D003282 ORTHO05D003637 4.7e-11 71.2 73 46.6
HanXRQChr05g0150961 Helianthus annuus HOM05D003282 ORTHO05D003637 4.7e-11 71.2 71 46.5
Lsat_1_v5_gn_6_110941 Lactuca sativa HOM05D003282 ORTHO05D003637 4.7e-11 71.2 75 46.7
Lalb_Chr22g0355661 Lupinus albus HOM05D003282 ORTHO05D003637 4.7e-11 71.2 75 49.3
Peaxi162Scf00160g00052 Petunia axillaris HOM05D003282 ORTHO05D003637 4.7e-11 71.2 87 46.0
Nitab4.5_0002314g0080 Nicotiana tabacum HOM05D003282 ORTHO05D003637 6.1e-11 70.9 75 46.7
Oeu016577.1 Olea europaea HOM05D003282 ORTHO05D003637 6.1e-11 70.9 72 50.0
Actinidia22697 Actinidia chinensis HOM05D003282 ORTHO05D003637 8.0e-11 70.5 67 49.3
HanXRQChr12g0369291 Helianthus annuus HOM05D003282 ORTHO05D003637 1.0e-10 70.1 88 46.6
Prupe.1G422400 Prunus persica HOM05D003282 ORTHO05D003637 1.0e-10 70.1 81 46.9
Nitab4.5_0008551g0010 Nicotiana tabacum HOM05D003282 ORTHO05D003637 1.4e-10 69.7 75 48.0
Sopen04g031410 Solanum pennellii HOM05D003282 ORTHO05D003637 1.4e-10 69.7 65 56.9
CSS0046043 Camellia sinensis var. sinensis HOM05D003282 ORTHO05D003637 2.3e-10 68.9 74 43.2
Haze_22432 Corylus avellana HOM05D003282 ORTHO05D003637 2.3e-10 68.9 69 50.7
Duzib041G0425 Durio zibethinus HOM05D003282 ORTHO05D003637 2.3e-10 68.9 67 49.3
Peaxi162Scf00551g00011 Petunia axillaris HOM05D003282 ORTHO05D003637 2.3e-10 68.9 66 48.5
vmacro22051 Vaccinium macrocarpon HOM05D003282 ORTHO05D003637 2.3e-10 68.9 71 53.5
Solyc04g077810.1 Solanum lycopersicum HOM05D003282 ORTHO05D003637 3.0e-10 68.6 65 55.4
PGSC0003DMG400010618 Solanum tuberosum HOM05D003282 ORTHO05D003637 3.0e-10 68.6 65 55.4
Glyma.06G046800 Glycine max HOM05D003282 ORTHO05D003637 4.0e-10 68.2 88 44.3
Glyma.17G234800 Glycine max HOM05D003282 ORTHO05D003637 4.0e-10 68.2 67 47.8
Gorai.005G099300 Gossypium raimondii HOM05D003282 ORTHO05D003637 5.2e-10 67.8 80 45.0
Potri.002G118200 Populus trichocarpa HOM05D003282 ORTHO05D003637 5.2e-10 67.8 68 54.4
SalBow7G3247 Salvia bowleyana HOM05D003282 ORTHO05D003637 5.2e-10 67.8 59 52.5
Sabra14G0009700 Salix brachista HOM05D003282 ORTHO05D003637 6.8e-10 67.4 65 56.9
TWI12G0431 Tripterygium wilfordii HOM05D003282 ORTHO05D003637 6.8e-10 67.4 58 56.9
VMungo0647G2568 Vigna mungo HOM05D003282 ORTHO05D003637 6.8e-10 67.4 72 47.2
DCAR_008857 Daucus carota HOM05D003282 ORTHO05D003637 8.8e-10 67.0 84 40.5
DCAR_020050 Daucus carota HOM05D003282 ORTHO05D003637 8.8e-10 67.0 67 47.8
DCAR_020051 Daucus carota HOM05D003282 ORTHO05D003637 8.8e-10 67.0 67 47.8
Rhsim07G0219700 Rhododendron simsii HOM05D003282 ORTHO05D003637 8.8e-10 67.0 71 50.7
Cc10_g04990 Coffea canephora HOM05D003282 ORTHO05D003637 1.2e-09 66.6 75 44.0
Manes.18G046800 Manihot esculenta HOM05D003282 ORTHO05D003637 1.2e-09 66.6 92 41.3
Lalb_Chr14g0368171 Lupinus albus HOM05D003282 ORTHO05D003637 1.5e-09 66.2 71 47.9
Nn1g04545 Nelumbo nucifera HOM05D003282 ORTHO05D003637 1.5e-09 66.2 71 49.3
Thecc.08G088400 Theobroma cacao HOM05D003282 ORTHO05D003637 1.5e-09 66.2 65 47.7
DCAR_012817 Daucus carota HOM05D003282 ORTHO05D003637 2.0e-09 65.9 81 44.4
Gohir.A06G024200 Gossypium hirsutum HOM05D003282 ORTHO05D003637 2.0e-09 65.9 65 46.2
HanXRQChr09g0266811 Helianthus annuus HOM05D003282 ORTHO05D003637 2.0e-09 65.9 68 47.1
Cfa013774 Carpinus fangiana HOM05D003282 ORTHO05D003637 2.6e-09 65.5 76 46.1
COL.COLO4_28502 Corchorus olitorius HOM05D003282 ORTHO05D003637 2.6e-09 65.5 70 48.6
Eucgr.F02249 Eucalyptus grandis HOM05D003282 ORTHO05D003637 2.6e-09 65.5 60 50.0
Gohir.A02G080900 Gossypium hirsutum HOM05D003282 ORTHO05D003637 2.6e-09 65.5 74 43.2
Gohir.D02G088600 Gossypium hirsutum HOM05D003282 ORTHO05D003637 2.6e-09 65.5 80 43.8
Sabra02G0092800 Salix brachista HOM05D003282 ORTHO05D003637 2.6e-09 65.5 71 50.7
Duzib093G1075 Durio zibethinus HOM05D003282 ORTHO05D003637 3.4e-09 65.1 65 47.7
TWI56G0432 Tripterygium wilfordii HOM05D003282 ORTHO05D003637 3.4e-09 65.1 61 52.5
ClCG05G020620 Citrullus lanatus HOM05D003282 ORTHO05D003637 4.4e-09 64.7 78 41.0
HanXRQChr04g0102441 Helianthus annuus HOM05D003282 ORTHO05D003637 4.4e-09 64.7 82 43.9
MD07G1211400 Malus domestica HOM05D003282 ORTHO05D003637 4.4e-09 64.7 67 44.8
Medtr1g017990 Medicago truncatula HOM05D003282 ORTHO05D003637 4.4e-09 64.7 96 39.6
Phvul.009G072000 Phaseolus vulgaris HOM05D003282 ORTHO05D003637 4.4e-09 64.7 96 38.5
TAR381G0972 Trochodendron aralioides HOM05D003282 ORTHO05D003637 4.4e-09 64.7 88 36.4
TAR625G1300 Trochodendron aralioides HOM05D003282 ORTHO05D003637 4.4e-09 64.7 71 46.5
Ciclev10002231m.g Citrus clementina HOM05D003282 ORTHO05D003637 5.7e-09 64.3 81 42.0
MD15G1068500 Malus domestica HOM05D003282 ORTHO05D003637 5.7e-09 64.3 85 38.8
Phvul.001G028100 Phaseolus vulgaris HOM05D003282 ORTHO05D003637 5.7e-09 64.3 72 44.4
ATR0739G137 Amborella trichopoda HOM05D003282 ORTHO05D003637 7.5e-09 63.9 89 40.4
MELO3C016821.2 Cucumis melo HOM05D003282 ORTHO05D003637 7.5e-09 63.9 65 46.2
Glyma.04G046000 Glycine max HOM05D003282 ORTHO05D003637 7.5e-09 63.9 78 39.7
Manes.05G182200 Manihot esculenta HOM05D003282 ORTHO05D003637 7.5e-09 63.9 78 44.9
VMungo1309G1277 Vigna mungo HOM05D003282 ORTHO05D003637 7.5e-09 63.9 78 41.0
Actinidia10202 Actinidia chinensis HOM05D000139 ORTHO05D009860 9.8e-09 63.5 79 43.0
Cpa.g.sc142.29 Carica papaya HOM05D003282 ORTHO05D003637 9.8e-09 63.5 66 47.0
Lsat_1_v5_gn_4_132700 Lactuca sativa HOM05D003282 ORTHO05D003637 9.8e-09 63.5 87 42.5
Potri.014G015800 Populus trichocarpa HOM05D003282 ORTHO05D003637 1.3e-08 63.2 88 43.2
Prupe.2G244200 Prunus persica HOM05D003282 ORTHO05D003637 1.3e-08 63.2 63 47.6
QL12p038149 Quercus lobata HOM05D003282 ORTHO05D003637 1.3e-08 63.2 79 40.5
Gohir.A13G096700 Gossypium hirsutum HOM05D003282 ORTHO05D003637 1.7e-08 62.8 94 39.4
Gohir.D13G101800 Gossypium hirsutum HOM05D003282 ORTHO05D003637 1.7e-08 62.8 94 39.4
Gorai.013G114000 Gossypium raimondii HOM05D003282 ORTHO05D003637 1.7e-08 62.8 94 39.4
Lj1g0007382 Lotus japonicus HOM05D003282 ORTHO05D003637 2.2e-08 62.4 88 38.6
CSS0025102 Camellia sinensis var. sinensis HOM05D003282 ORTHO05D003637 2.8e-08 62.0 73 39.7
CSS0044747 Camellia sinensis var. sinensis HOM05D003282 ORTHO05D003637 2.8e-08 62.0 73 39.7
PGR083G0104 Punica granatum HOM05D003282 ORTHO05D003637 2.8e-08 62.0 68 45.6
RcHm_v2.0_Chr6g0309661 Rosa chinensis HOM05D003282 ORTHO05D003637 2.8e-08 62.0 64 46.9
Rhsim06G0062500 Rhododendron simsii HOM05D003282 ORTHO05D003637 3.7e-08 61.6 75 44.0
CsaV3_4G035060 Cucumis sativus L. HOM05D003282 ORTHO05D003637 4.9e-08 61.2 60 46.7
FvH4_2g33050 Fragaria vesca HOM05D003282 ORTHO05D003637 4.9e-08 61.2 68 44.1
FAN20G2529 Fragaria x ananassa HOM05D003282 ORTHO05D003637 4.9e-08 61.2 66 45.5
FAN24G0457 Fragaria x ananassa HOM05D003282 ORTHO05D003637 4.9e-08 61.2 68 44.1
FAN27G3264 Fragaria x ananassa HOM05D003282 ORTHO05D003637 4.9e-08 61.2 66 45.5
Gohir.D06G021300 Gossypium hirsutum HOM05D003282 ORTHO05D003637 4.9e-08 61.2 65 43.1
Gorai.010G025900 Gossypium raimondii HOM05D003282 ORTHO05D003637 4.9e-08 61.2 65 43.1
Psat5g038040 Pisum sativum HOM05D003282 ORTHO05D003637 4.9e-08 61.2 72 41.7
Psat6g018120 Pisum sativum HOM05D003282 ORTHO05D003637 4.9e-08 61.2 70 45.7
CANSAT25G2311 Cannabis sativa HOM05D003282 ORTHO05D003637 6.3e-08 60.8 65 47.7
CiPaw.07G174500 Carya illinoinensis HOM05D003282 ORTHO05D003637 8.3e-08 60.5 69 44.9
CiPaw.08G050400 Carya illinoinensis HOM05D003282 ORTHO05D003637 8.3e-08 60.5 71 45.1
Dinv44952 Davidia involucrata HOM05D003282 ORTHO05D003637 8.3e-08 60.5 92 37.0
Sed0008207 Sechium edule HOM05D003282 ORTHO05D003637 8.3e-08 60.5 78 44.9
Nitab4.5_0000800g0090 Nicotiana tabacum HOM05D003282 ORTHO05D003637 1.4e-07 59.7 66 45.5
Nitab4.5_0007031g0010 Nicotiana tabacum HOM05D003282 ORTHO05D003637 1.4e-07 59.7 76 43.4
Solyc12g088330.1 Solanum lycopersicum HOM05D003282 ORTHO05D003637 1.4e-07 59.7 91 39.6
Lj5g0017072 Lotus japonicus HOM05D003282 ORTHO05D003637 1.8e-07 59.3 93 39.8
Nn5g30605 Nelumbo nucifera HOM05D003282 ORTHO05D003637 1.8e-07 59.3 63 46.0
TPR.G37725 Trifolium pratense HOM05D003282 ORTHO05D003637 1.8e-07 59.3 70 44.3
Aqoxy5G00861 Aquilegia oxysepala HOM05D003282 ORTHO05D003637 3.1e-07 58.5 68 42.6
MD01G1144800 Malus domestica HOM05D003282 ORTHO05D003637 3.1e-07 58.5 54 48.1
THA.LOC104816757 Tarenaya hassleriana HOM05D003282 ORTHO05D003637 3.1e-07 58.5 83 36.1
Atru.chr13.836 Acer truncatum HOM05D003282 ORTHO05D003637 4.1e-07 58.2 67 41.8
Sc24g0002380 Simmondsia chinensis HOM05D003282 ORTHO05D003637 4.1e-07 58.2 68 41.2
Thecc.05G238800 Theobroma cacao HOM05D003282 ORTHO05D003637 4.1e-07 58.2 70 44.3
AUR62022478 Chenopodium quinoa HOM05D003282 ORTHO05D003637 5.4e-07 57.8 87 39.1
AUR62037413 Chenopodium quinoa HOM05D003282 ORTHO05D003637 5.4e-07 57.8 87 39.1
FAN15G3410 Fragaria x ananassa HOM05D003282 ORTHO05D003637 5.4e-07 57.8 57 45.6
Lalb_Chr11g0062891 Lupinus albus HOM05D003282 ORTHO05D003637 9.2e-07 57.0 72 40.3
PSO541G1417 Papaver somniferum HOM05D003282 ORTHO05D003637 9.2e-07 57.0 77 41.6
Ah.05g167090 Amaranthus hybridus HOM05D003282 ORTHO05D003637 1.2e-06 56.6 73 41.1
arahy.Tifrunner.gnm1.ann1.L3I3WK Arachis hypogaea HOM05D003282 ORTHO05D003637 1.6e-06 56.2 72 40.3
MD08G1082000 Malus domestica HOM05D003282 ORTHO05D003637 1.6e-06 56.2 68 35.3
arahy.Tifrunner.gnm1.ann1.TP4UKQ Arachis hypogaea HOM05D003282 ORTHO05D003637 2.7e-06 55.5 80 36.2
Sed0011240 Sechium edule HOM05D003282 ORTHO05D003637 2.7e-06 55.5 67 38.8
COL.COLO4_07066 Corchorus olitorius HOM05D003282 ORTHO05D003637 3.5e-06 55.1 87 40.2
HanXRQChr02g0039181 Helianthus annuus HOM05D003282 ORTHO05D003637 3.5e-06 55.1 82 32.9
PSO675G3363 Papaver somniferum HOM05D003282 ORTHO05D003637 3.5e-06 55.1 72 44.4
Sc02g0007910 Simmondsia chinensis HOM05D003282 ORTHO05D003637 3.5e-06 55.1 67 38.8
unitig_8.g5044 Utricularia gibba HOM05D003282 ORTHO05D003637 3.5e-06 55.1 81 35.8
BcaC07g41826 Brassica carinata HOM05D002240 ORTHO05D002453 4.5e-06 54.7 78 39.7
FvH4_7g23760 Fragaria vesca HOM05D003282 ORTHO05D003637 4.5e-06 54.7 65 38.5
FAN01G3110 Fragaria x ananassa HOM05D003282 ORTHO05D003637 4.5e-06 54.7 65 38.5
FAN06G1275 Fragaria x ananassa HOM05D003282 ORTHO05D003637 4.5e-06 54.7 65 38.5
A09p65150 Brassica napus HOM05D002240 ORTHO05D002453 5.9e-06 54.3 78 39.7
BraA09t41858Z Brassica rapa HOM05D002240 ORTHO05D002453 5.9e-06 54.3 78 39.7
Eucgr.F00084 Eucalyptus grandis HOM05D003282 ORTHO05D003637 5.9e-06 54.3 68 41.2
VMungo0464G1205 Vigna mungo HOM05D003282 ORTHO05D003637 5.9e-06 54.3 93 36.6
PSO541G4649 Papaver somniferum HOM05D003282 ORTHO05D003637 7.8e-06 53.9 78 35.9


User provided reference genes

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