Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g4839 Utricularia gibba HOM05D001864 ORTHO05D005589 3.1e-122 441.8 223 100.0
unitig_578.g16197 Utricularia gibba HOM05D001864 ORTHO05D005589 5.2e-37 158.7 177 52.0
SGA_v2.0_scaffold84G26524 Striga asiatica HOM05D001864 ORTHO05D005589 3.3e-31 139.4 177 46.3
MSTRG.22159 Avicennia marina HOM05D001864 ORTHO05D005589 5.3e-29 132.1 181 44.2
Migut.N02891 Erythranthe guttata HOM05D001864 ORTHO05D005589 2.0e-28 130.2 174 46.0
MSTRG.24452 Avicennia marina HOM05D001864 ORTHO05D005589 2.9e-27 126.3 180 43.9
SalBow7G3512 Salvia bowleyana HOM05D001864 ORTHO05D005589 2.3e-24 116.7 171 40.9
Cc10_g07110 Coffea canephora HOM05D001864 ORTHO05D005589 1.1e-23 114.4 178 38.2
Oeu053215.1 Olea europaea HOM05D001864 ORTHO05D005589 1.1e-23 114.4 173 42.8
Actinidia33131 Actinidia chinensis HOM05D001864 ORTHO05D005589 1.9e-23 113.6 181 40.3
Actinidia29591 Actinidia chinensis HOM05D001864 ORTHO05D005589 9.6e-23 111.3 172 41.3
Oeu046306.1 Olea europaea HOM05D001864 ORTHO05D005589 2.8e-22 109.8 171 41.5
CSS0006485 Camellia sinensis var. sinensis HOM05D001864 ORTHO05D005589 3.6e-22 109.4 173 38.7
Hma1.2p1_0575F.1_g181650 Hydrangea macrophylla HOM05D001864 ORTHO05D005589 4.0e-21 105.9 170 37.6
Dinv44781 Davidia involucrata HOM05D001864 ORTHO05D005589 5.3e-21 105.5 171 35.1
Lj1g0010905 Lotus japonicus HOM05D001864 ORTHO05D005589 5.3e-21 105.5 168 38.7
Lj4C101T10 Lonicera japonica HOM05D001864 ORTHO05D005589 1.2e-20 104.4 172 36.0
Thecc.08G105600 Theobroma cacao HOM05D001864 ORTHO05D005589 2.6e-20 103.2 170 38.2
FAN13G2763 Fragaria x ananassa HOM05D001864 ORTHO05D005589 3.4e-20 102.8 174 36.8
MD15G1370700 Malus domestica HOM05D001864 ORTHO05D005589 3.4e-20 102.8 98 50.0
Nn1g05383 Nelumbo nucifera HOM05D001864 ORTHO05D005589 3.4e-20 102.8 170 36.5
CSS0032152 Camellia sinensis var. sinensis HOM05D001864 ORTHO05D005589 4.5e-20 102.4 171 38.0
Glyma.06G103000 Glycine max HOM05D001864 ORTHO05D005589 5.8e-20 102.1 95 51.6
arahy.Tifrunner.gnm1.ann1.S8GTV1 Arachis hypogaea HOM05D001864 ORTHO05D005589 7.6e-20 101.7 89 53.9
arahy.Tifrunner.gnm1.ann1.XFU76C Arachis hypogaea HOM05D001864 ORTHO05D005589 7.6e-20 101.7 89 53.9
FvH4_5g37130 Fragaria vesca HOM05D001864 ORTHO05D005589 7.6e-20 101.7 174 36.8
FAN04G1761 Fragaria x ananassa HOM05D001864 ORTHO05D005589 7.6e-20 101.7 174 36.8
FAN18G4216 Fragaria x ananassa HOM05D001864 ORTHO05D005589 7.6e-20 101.7 174 36.8
MD08G1184200 Malus domestica HOM05D001864 ORTHO05D005589 7.6e-20 101.7 95 49.5
VMungo1309G2150 Vigna mungo HOM05D001864 ORTHO05D005589 7.6e-20 101.7 154 37.0
Gorai.010G039900 Gossypium raimondii HOM05D001864 ORTHO05D005589 9.9e-20 101.3 97 53.6
Prupe.1G518400 Prunus persica HOM05D001864 ORTHO05D005589 9.9e-20 101.3 108 46.3
Duzib116G0470 Durio zibethinus HOM05D001864 ORTHO05D005589 1.3e-19 100.9 168 39.3
Phvul.009G031500 Phaseolus vulgaris HOM05D001864 ORTHO05D005589 1.3e-19 100.9 95 52.6
FAN08G3035 Fragaria x ananassa HOM05D001864 ORTHO05D005589 1.7e-19 100.5 174 36.8
Gohir.D06G035900 Gossypium hirsutum HOM05D001864 ORTHO05D005589 1.7e-19 100.5 97 53.6
Medtr3g074620 Medicago truncatula HOM05D001864 ORTHO05D005589 1.7e-19 100.5 164 36.0
Gohir.A06G035300 Gossypium hirsutum HOM05D001864 ORTHO05D005589 2.2e-19 100.1 97 52.6
TPR.G26155 Trifolium pratense HOM05D001864 ORTHO05D005589 2.2e-19 100.1 168 37.5
Atru.chr13.1174 Acer truncatum HOM05D001864 ORTHO05D005589 2.9e-19 99.8 170 35.9
Ca_15251_v3 Cicer arietinum L. HOM05D001864 ORTHO05D005589 2.9e-19 99.8 145 44.8
QL12p036962 Quercus lobata HOM05D001864 ORTHO05D005589 3.8e-19 99.4 95 51.6
EL10Ac1g01208 Beta vulgaris HOM05D001864 ORTHO05D005589 4.9e-19 99.0 168 35.7
Cpa.g.sc36.142 Carica papaya HOM05D001864 ORTHO05D005589 4.9e-19 99.0 89 53.9
Solyc04g074240.3 Solanum lycopersicum HOM05D001864 ORTHO05D005589 4.9e-19 99.0 172 36.6
Duzib041G0589 Durio zibethinus HOM05D001864 ORTHO05D005589 6.4e-19 98.6 94 53.2
Nitab4.5_0000232g0070 Nicotiana tabacum HOM05D001864 ORTHO05D005589 6.4e-19 98.6 89 55.1
Nitab4.5_0006616g0020 Nicotiana tabacum HOM05D001864 ORTHO05D005589 6.4e-19 98.6 89 55.1
Cfa013643 Carpinus fangiana HOM05D001864 ORTHO05D005589 8.4e-19 98.2 161 36.6
PGR042G1033 Punica granatum HOM05D001864 ORTHO05D005589 8.4e-19 98.2 179 36.3
TWI56G0625 Tripterygium wilfordii HOM05D001864 ORTHO05D005589 8.4e-19 98.2 171 36.8
TAR381G0584 Trochodendron aralioides HOM05D001864 ORTHO05D005589 8.4e-19 98.2 173 35.3
Glyma.04G101300 Glycine max HOM05D001864 ORTHO05D005589 1.4e-18 97.4 95 51.6
Rhsim07G0203100 Rhododendron simsii HOM05D001864 ORTHO05D005589 1.4e-18 97.4 170 37.1
Sopen04g029380 Solanum pennellii HOM05D001864 ORTHO05D005589 1.4e-18 97.4 172 36.0
PGSC0003DMG400006416 Solanum tuberosum HOM05D001864 ORTHO05D005589 1.4e-18 97.4 178 37.1
TAR076G0003 Trochodendron aralioides HOM05D001864 ORTHO05D005589 1.4e-18 97.4 170 34.7
AUR62027771 Chenopodium quinoa HOM05D001864 ORTHO05D005589 1.9e-18 97.1 169 34.9
RcHm_v2.0_Chr7g0238681 Rosa chinensis HOM05D001864 ORTHO05D005589 1.9e-18 97.1 89 50.6
CANSAT25G0016 Cannabis sativa HOM05D001864 ORTHO05D005589 2.4e-18 96.7 174 38.5
Gohir.D02G083600 Gossypium hirsutum HOM05D001864 ORTHO05D005589 2.4e-18 96.7 95 50.5
Gorai.005G094200 Gossypium raimondii HOM05D001864 ORTHO05D005589 2.4e-18 96.7 95 50.5
Peaxi162Scf00392g00414 Petunia axillaris HOM05D001864 ORTHO05D005589 2.4e-18 96.7 112 45.5
Psat5g138800 Pisum sativum HOM05D001864 ORTHO05D005589 2.4e-18 96.7 167 37.1
Potri.002G097601 Populus trichocarpa HOM05D001864 ORTHO05D005589 2.4e-18 96.7 170 37.1
CiPaw.08G045800 Carya illinoinensis HOM05D001864 ORTHO05D005589 4.2e-18 95.9 177 36.7
Ciclev10001862m.g Citrus clementina HOM05D001864 ORTHO05D005589 4.2e-18 95.9 172 36.6
Sabra05G0123700 Salix brachista HOM05D001864 ORTHO05D005589 4.2e-18 95.9 165 36.4
Sed0006709 Sechium edule HOM05D001864 ORTHO05D005589 4.2e-18 95.9 87 51.7
TWI12G0733 Tripterygium wilfordii HOM05D001864 ORTHO05D005589 4.2e-18 95.9 170 37.1
Sp1g29830 Schrenkiella parvula HOM05D001864 ORTHO05D005589 5.5e-18 95.5 169 36.7
ClCG08G011140 Citrullus lanatus HOM05D001864 ORTHO05D005589 7.1e-18 95.1 173 37.6
COL.COLO4_16383 Corchorus olitorius HOM05D001864 ORTHO05D005589 7.1e-18 95.1 170 36.5
Duzib093G1826 Durio zibethinus HOM05D001864 ORTHO05D005589 7.1e-18 95.1 171 37.4
CsaV3_2G029720 Cucumis sativus L. HOM05D001864 ORTHO05D005589 9.3e-18 94.7 167 38.3
Gohir.A02G076400 Gossypium hirsutum HOM05D001864 ORTHO05D005589 9.3e-18 94.7 95 49.5
HanXRQChr05g0145431 Helianthus annuus HOM05D001864 ORTHO05D005589 9.3e-18 94.7 172 36.6
Lalb_Chr23g0270551 Lupinus albus HOM05D001864 ORTHO05D005589 9.3e-18 94.7 89 51.7
Hund26966 Selenicereus undatus HOM05D001864 ORTHO05D005589 9.3e-18 94.7 176 34.1
Glyma.04G101100 Glycine max HOM05D001864 ORTHO05D005589 1.2e-17 94.4 180 36.1
Manes.02G151800 Manihot esculenta HOM05D001864 ORTHO05D005589 1.2e-17 94.4 166 36.1
CAN.G193.34 Capsicum annuum HOM05D001864 ORTHO05D005589 1.6e-17 94.0 89 51.7
Potri.005G164200 Populus trichocarpa HOM05D001864 ORTHO05D005589 1.6e-17 94.0 162 35.8
Sabra02G0076600 Salix brachista HOM05D001864 ORTHO05D005589 1.6e-17 94.0 157 37.6
BcaB04g17851 Brassica carinata HOM05D001864 ORTHO05D005589 2.7e-17 93.2 168 36.9
Thhalv10001824m.g Eutrema salsugineum HOM05D001864 ORTHO05D005589 2.7e-17 93.2 91 50.5
Ah.05g169900 Amaranthus hybridus HOM05D001864 ORTHO05D005589 3.5e-17 92.8 169 33.1
CiPaw.07G179100 Carya illinoinensis HOM05D001864 ORTHO05D005589 3.5e-17 92.8 160 37.5
Haze_22277 Corylus avellana HOM05D001864 ORTHO05D005589 3.5e-17 92.8 87 50.6
MELO3C011030.2 Cucumis melo HOM05D001864 ORTHO05D005589 3.5e-17 92.8 167 37.7
Actinidia10327 Actinidia chinensis HOM05D001864 ORTHO05D005589 6.0e-17 92.0 185 33.0
BcaC07g37528 Brassica carinata HOM05D001864 ORTHO05D005589 6.0e-17 92.0 89 50.6
BolC8t47846H Brassica oleracea HOM05D001864 ORTHO05D005589 6.0e-17 92.0 89 50.6
vmacro04740 Vaccinium macrocarpon HOM05D001864 ORTHO05D005589 6.0e-17 92.0 176 35.2
AT1G34780 Arabidopsis thaliana HOM05D001864 ORTHO05D005589 7.9e-17 91.7 89 49.4
Carub.0001s3271 Capsella rubella HOM05D001864 ORTHO05D005589 7.9e-17 91.7 89 50.6
CARHR034050 Cardamine hirsuta HOM05D001864 ORTHO05D005589 7.9e-17 91.7 103 47.6
AL1G49810 Arabidopsis lyrata HOM05D001864 ORTHO05D005589 1.0e-16 91.3 89 49.4
A05p23880 Brassica napus HOM05D001864 ORTHO05D005589 1.0e-16 91.3 93 46.2
BraA05t21264Z Brassica rapa HOM05D001864 ORTHO05D005589 1.0e-16 91.3 93 46.2
A08p08150 Brassica napus HOM05D001864 ORTHO05D005589 1.3e-16 90.9 89 49.4
BraA08t32837Z Brassica rapa HOM05D001864 ORTHO05D005589 1.3e-16 90.9 89 49.4
ECA232G3609 Erigeron canadensis HOM05D001864 ORTHO05D005589 1.8e-16 90.5 140 35.0
TAR628G0769 Trochodendron aralioides HOM05D001864 ORTHO05D005589 1.8e-16 90.5 174 33.9
Eucgr.F00332 Eucalyptus grandis HOM05D001864 ORTHO05D005589 3.0e-16 89.7 86 51.2
Lsat_1_v5_gn_6_103221 Lactuca sativa HOM05D001864 ORTHO05D005589 3.9e-16 89.4 170 32.9
PSO210G3292 Papaver somniferum HOM05D001864 ORTHO05D005589 3.9e-16 89.4 168 31.5
Lsat_1_v5_gn_9_41741 Lactuca sativa HOM05D001864 ORTHO05D005589 5.1e-16 89.0 171 36.3
PSO781G0164 Papaver somniferum HOM05D001864 ORTHO05D005589 5.1e-16 89.0 171 33.9
TWI36G0392 Tripterygium wilfordii HOM05D001864 ORTHO05D005589 6.7e-16 88.6 170 34.7
BcaC05g27751 Brassica carinata HOM05D001864 ORTHO05D005589 8.7e-16 88.2 89 47.2
C05p37410 Brassica napus HOM05D001864 ORTHO05D005589 8.7e-16 88.2 169 37.3
BolC5t32483H Brassica oleracea HOM05D001864 ORTHO05D005589 8.7e-16 88.2 169 37.3
Manes.18G066600 Manihot esculenta HOM05D001864 ORTHO05D005589 8.7e-16 88.2 93 48.4
THA.LOC104816697 Tarenaya hassleriana HOM05D001864 ORTHO05D005589 8.7e-16 88.2 170 37.1
AUR62018926 Chenopodium quinoa HOM05D001864 ORTHO05D005589 1.1e-15 87.8 86 50.0
Glyma.06G102800 Glycine max HOM05D001864 ORTHO05D005589 1.5e-15 87.4 95 46.3
Gohir.D01G115000 Gossypium hirsutum HOM05D001864 ORTHO05D005589 1.5e-15 87.4 89 48.3
Sp6g08780 Schrenkiella parvula HOM05D001864 ORTHO05D005589 1.9e-15 87.0 168 35.1
Aa31LG6G8560 Aethionema arabicum HOM05D001864 ORTHO05D005589 2.5e-15 86.7 89 47.2
HanXRQChr10g0278301 Helianthus annuus HOM05D001864 ORTHO05D005589 2.5e-15 86.7 171 32.7
Lalb_Chr08g0242071 Lupinus albus HOM05D001864 ORTHO05D005589 3.3e-15 86.3 89 48.3
Nn5g30081 Nelumbo nucifera HOM05D001864 ORTHO05D005589 3.3e-15 86.3 83 47.0
Gohir.A01G127100 Gossypium hirsutum HOM05D001864 ORTHO05D005589 5.6e-15 85.5 95 46.3
Sc01g0000490 Simmondsia chinensis HOM05D001864 ORTHO05D005589 5.6e-15 85.5 172 32.0
Zm00001eb194120 Zea mays HOM05D001864 ORTHO05D005589 5.6e-15 85.5 93 44.1
Gorai.002G140600 Gossypium raimondii HOM05D001864 ORTHO05D005589 7.4e-15 85.1 89 47.2
HanXRQChr15g0490021 Helianthus annuus HOM05D001864 ORTHO05D005589 1.3e-14 84.3 89 46.1
CDE03G0263 Ceratophyllum demersum HOM05D001864 ORTHO05D005589 2.1e-14 83.6 162 32.1
AL6G41610 Arabidopsis lyrata HOM05D001864 ORTHO05D005589 2.8e-14 83.2 87 47.1
PSO781G0188 Papaver somniferum HOM05D001864 ORTHO05D005589 2.8e-14 83.2 170 32.9
THA.LOC104813116 Tarenaya hassleriana HOM05D001864 ORTHO05D005589 2.8e-14 83.2 170 36.5
Aqoxy6G00764 Aquilegia oxysepala HOM05D001864 ORTHO05D005589 3.7e-14 82.8 170 31.2
PSO541G3286 Papaver somniferum HOM05D001864 ORTHO05D005589 3.7e-14 82.8 171 32.2
PSO541G6282 Papaver somniferum HOM05D001864 ORTHO05D005589 3.7e-14 82.8 170 32.9
Thhalv10028636m.g Eutrema salsugineum HOM05D001864 ORTHO05D005589 4.8e-14 82.4 88 45.5
MBI02_g35748_MAGBIO Magnolia biondii HOM05D001864 ORTHO05D005589 4.8e-14 82.4 93 41.9
Zm00001eb255320 Zea mays HOM05D001864 ORTHO05D005589 6.2e-14 82.0 89 43.8
Carub.0006s2753 Capsella rubella HOM05D001864 ORTHO05D005589 8.1e-14 81.6 86 48.8
Lj4A724T57 Lonicera japonica HOM05D001864 ORTHO05D005589 1.8e-13 80.5 75 48.0
SEGI_10688 Sequoiadendron giganteum HOM05D001864 ORTHO05D005589 2.4e-13 80.1 85 48.2
HPP92_013106 Vanilla planifolia HOM05D001864 ORTHO05D005589 2.4e-13 80.1 91 40.7
CDE06G1410 Ceratophyllum demersum HOM05D001864 ORTHO05D005589 4.0e-13 79.3 94 37.2
Aa31LG9G14630 Aethionema arabicum HOM05D001864 ORTHO05D005589 5.3e-13 79.0 88 44.3
AT4G08930 Arabidopsis thaliana HOM05D001864 ORTHO05D005589 2.6e-12 76.6 88 44.3
ATR0782G075 Amborella trichopoda HOM05D001864 ORTHO05D005589 3.4e-12 76.3 85 43.5
Pp3c3_31740 Physcomitrium patens HOM05D001864 ORTHO05D005589 2.2e-11 73.6 90 41.1
Zm00001eb042300 Zea mays HOM05D001864 ORTHO05D005589 3.8e-11 72.8 88 39.8
Os06g0220800 Oryza sativa ssp. japonica HOM05D001864 ORTHO05D005589 4.6e-09 65.9 91 38.5
Lsat_1_v5_gn_1_68640 Lactuca sativa HOM05D001864 ORTHO05D003978 5.1e-08 62.4 113 36.3
SalBow3G1280 Salvia bowleyana HOM05D001864 ORTHO05D003978 8.7e-08 61.6 79 40.5
SEGI_27114 Sequoiadendron giganteum HOM05D001864 ORTHO05D003978 1.5e-07 60.8 101 38.6
Sc09g0000080 Simmondsia chinensis HOM05D001864 ORTHO05D003978 7.4e-07 58.5 82 39.0
Atru.chr2.1395 Acer truncatum HOM05D001864 ORTHO05D003978 9.6e-07 58.2 194 29.9
SalBow2G3010 Salvia bowleyana HOM05D001864 ORTHO05D003978 1.3e-06 57.8 85 36.5
Os02g0754900 Oryza sativa ssp. japonica HOM05D001864 ORTHO05D005589 1.6e-06 57.4 65 43.1
CDE02G1154 Ceratophyllum demersum HOM05D001864 ORTHO05D003978 2.1e-06 57.0 100 36.0
Eucgr.A02105 Eucalyptus grandis HOM05D001864 ORTHO05D003978 2.1e-06 57.0 88 36.4
Os03g0806500 Oryza sativa ssp. japonica HOM05D001864 ORTHO05D003978 2.1e-06 57.0 81 38.3
Migut.D02562 Erythranthe guttata HOM05D001864 ORTHO05D003978 3.7e-06 56.2 82 34.1
Migut.D02586 Erythranthe guttata HOM05D001864 ORTHO05D003978 3.7e-06 56.2 82 34.1
Gohir.A08G218600 Gossypium hirsutum HOM05D001864 ORTHO05D003978 3.7e-06 56.2 97 35.1
HanXRQChr01g0021381 Helianthus annuus HOM05D001864 ORTHO05D003978 3.7e-06 56.2 101 33.7
A03p08660 Brassica napus HOM05D001864 ORTHO05D003978 4.8e-06 55.8 110 30.9
Duzib106G0097 Durio zibethinus HOM05D001864 ORTHO05D003978 6.3e-06 55.5 72 36.1
ECA248G2545 Erigeron canadensis HOM05D001864 ORTHO05D003978 6.3e-06 55.5 85 38.8
SHI14956 Sapria himalayana HOM05D001864 ORTHO05D003978 6.3e-06 55.5 49 51.0
MSTRG.12794 Avicennia marina HOM05D001864 ORTHO05D003978 8.2e-06 55.1 101 33.7
Dinv14337 Davidia involucrata HOM05D001864 ORTHO05D005589 8.2e-06 55.1 174 27.0


User provided reference genes

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