Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g4702 Utricularia gibba HOM05D005019 ORTHO05D006625 3.9e-312 1074.3 564 100.0
Migut.N02183 Erythranthe guttata HOM05D005019 ORTHO05D006625 1.5e-189 666.8 573 61.3
MSTRG.12540 Avicennia marina HOM05D005019 ORTHO05D006625 1.7e-185 653.3 576 58.2
SGA_v2.0_scaffold80G25914 Striga asiatica HOM05D005019 ORTHO05D006625 6.1e-183 644.8 513 62.8
Actinidia21157 Actinidia chinensis HOM05D005019 ORTHO05D006625 3.3e-181 639.0 506 63.4
SalBow6G4122 Salvia bowleyana HOM05D005019 ORTHO05D006625 5.3e-179 631.7 547 59.4
Dinv34572 Davidia involucrata HOM05D005019 ORTHO05D006625 7.0e-179 631.3 502 61.2
GSVIVG01000726001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.6e-178 630.2 573 56.4
Cfa002330 Carpinus fangiana HOM05D005019 ORTHO05D006625 8.5e-177 624.4 559 56.9
Lj1C59T1 Lonicera japonica HOM05D005019 ORTHO05D006625 1.9e-176 623.2 505 59.4
SalBow3G3235 Salvia bowleyana HOM05D005019 ORTHO05D006625 3.2e-176 622.5 577 57.4
Dinv22477 Davidia involucrata HOM05D005019 ORTHO05D006625 1.6e-175 620.2 561 56.7
Lj1P543T22 Lonicera japonica HOM05D005019 ORTHO05D006625 2.7e-175 619.4 500 60.8
Cc02_g22310 Coffea canephora HOM05D005019 ORTHO05D006625 3.6e-175 619.0 556 57.6
Prupe.5G054300 Prunus persica HOM05D005019 ORTHO05D006625 3.6e-175 619.0 570 56.0
PGSC0003DMG400023686 Solanum tuberosum HOM05D005019 ORTHO05D006625 1.0e-174 617.5 544 57.7
Nitab4.5_0008299g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 6.8e-174 614.8 505 60.0
Oeu018172.1 Olea europaea HOM05D005019 ORTHO05D006625 8.8e-174 614.4 502 61.2
Prupe.8G231800 Prunus persica HOM05D005019 ORTHO05D006625 1.2e-173 614.0 560 56.2
Nitab4.5_0010414g0010 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.6e-173 612.8 505 60.0
RcHm_v2.0_Chr6g0289431 Rosa chinensis HOM05D005019 ORTHO05D006625 9.8e-173 610.9 562 56.2
Solyc10g080180.3 Solanum lycopersicum HOM05D005019 ORTHO05D006625 1.3e-172 610.5 503 60.2
arahy.Tifrunner.gnm1.ann1.TZR8AU Arachis hypogaea HOM05D005019 ORTHO05D006625 2.2e-172 609.8 499 60.5
FAN18G2643 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.2e-172 609.8 557 56.6
ClCG02G012250 Citrullus lanatus HOM05D005019 ORTHO05D006625 3.7e-172 609.0 516 57.9
Sopen10g030790 Solanum pennellii HOM05D005019 ORTHO05D006625 8.3e-172 607.8 507 59.6
FAN27G0650 Fragaria x ananassa HOM05D005019 ORTHO05D006625 2.4e-171 606.3 570 54.9
Ciclev10019516m.g Citrus clementina HOM05D005019 ORTHO05D006625 5.4e-171 605.1 567 55.9
MELO3C020849.2 Cucumis melo HOM05D005019 ORTHO05D006625 5.4e-171 605.1 511 57.5
FvH4_5g20520 Fragaria vesca HOM05D005019 ORTHO05D006625 5.4e-171 605.1 557 56.0
CiPaw.03G257900 Carya illinoinensis HOM05D005019 ORTHO05D006625 7.0e-171 604.7 557 54.9
PGR044G0331 Punica granatum HOM05D005019 ORTHO05D006625 7.0e-171 604.7 571 55.5
TWI31G0602 Tripterygium wilfordii HOM05D005019 ORTHO05D006625 7.0e-171 604.7 566 55.5
Lalb_Chr19g0134621 Lupinus albus HOM05D005019 ORTHO05D006625 9.1e-171 604.4 553 57.0
Haze_24536 Corylus avellana HOM05D005019 ORTHO05D006625 1.2e-170 604.0 546 56.2
Duzib147G1145 Durio zibethinus HOM05D005019 ORTHO05D006625 1.2e-170 604.0 502 58.8
Sed0015889 Sechium edule HOM05D005019 ORTHO05D006625 1.2e-170 604.0 505 58.8
Eucgr.K03309 Eucalyptus grandis HOM05D005019 ORTHO05D006625 2.7e-170 602.8 567 55.4
MD10G1192400 Malus domestica HOM05D005019 ORTHO05D006625 2.7e-170 602.8 515 58.3
FvH4_2g22480 Fragaria vesca HOM05D005019 ORTHO05D006625 3.5e-170 602.4 555 56.0
FAN24G1214 Fragaria x ananassa HOM05D005019 ORTHO05D006625 3.5e-170 602.4 571 55.3
CANSAT35G0193 Cannabis sativa HOM05D005019 ORTHO05D006625 4.5e-170 602.1 507 59.6
Ca_00175_v3 Cicer arietinum L. HOM05D005019 ORTHO05D006625 5.9e-170 601.7 569 56.1
FAN20G1740 Fragaria x ananassa HOM05D005019 ORTHO05D006625 5.9e-170 601.7 570 54.7
Medtr2g009800 Medicago truncatula HOM05D005019 ORTHO05D006625 5.9e-170 601.7 570 56.0
Rhsim07G0080400 Rhododendron simsii HOM05D005019 ORTHO05D006625 7.7e-170 601.3 502 59.8
Thecc.01G159500 Theobroma cacao HOM05D005019 ORTHO05D006625 7.7e-170 601.3 504 59.5
Nitab4.5_0003006g0020 Nicotiana tabacum HOM05D005019 ORTHO05D006625 1.0e-169 600.9 505 59.2
Sc04g0003030 Simmondsia chinensis HOM05D005019 ORTHO05D006625 1.7e-169 600.1 501 59.5
TAR633G0331 Trochodendron aralioides HOM05D005019 ORTHO05D006625 1.7e-169 600.1 566 54.9
Lalb_Chr03g0030271 Lupinus albus HOM05D005019 ORTHO05D006625 2.3e-169 599.7 558 55.2
Manes.16G024300 Manihot esculenta HOM05D005019 ORTHO05D006625 2.9e-169 599.4 567 55.4
Glyma.15G059400 Glycine max HOM05D005019 ORTHO05D006625 5.0e-169 598.6 569 55.0
Potri.005G218600 Populus trichocarpa HOM05D005019 ORTHO05D006625 5.0e-169 598.6 535 55.9
Peaxi162Scf00045g00177 Petunia axillaris HOM05D005019 ORTHO05D006625 8.6e-169 597.8 503 59.0
FAN04G2884 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.1e-168 597.4 557 55.1
VMungo0540G2473 Vigna mungo HOM05D005019 ORTHO05D006625 1.5e-168 597.0 557 55.8
FAN15G0975 Fragaria x ananassa HOM05D005019 ORTHO05D006625 1.9e-168 596.7 568 54.8
Nitab4.5_0001370g0040 Nicotiana tabacum HOM05D005019 ORTHO05D006625 2.5e-168 596.3 503 58.8
CsaV3_2G016400 Cucumis sativus L. HOM05D005019 ORTHO05D006625 3.3e-168 595.9 529 56.7
Phvul.006G200700 Phaseolus vulgaris HOM05D005019 ORTHO05D006625 3.3e-168 595.9 560 56.1
TPR.G9511 Trifolium pratense HOM05D005019 ORTHO05D006625 5.5e-168 595.1 567 55.9
MD05G1205400 Malus domestica HOM05D005019 ORTHO05D006625 7.2e-168 594.7 573 54.6
Atru.chr5.1578 Acer truncatum HOM05D005019 ORTHO05D006625 1.6e-167 593.6 567 55.9
Glyma.13G255400 Glycine max HOM05D005019 ORTHO05D006625 1.6e-167 593.6 568 54.8
Gohir.D11G348100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 2.8e-167 592.8 504 58.7
Medtr2g101620 Medicago truncatula HOM05D005019 ORTHO05D006625 6.1e-167 591.7 571 54.8
Nn7g37931 Nelumbo nucifera HOM05D005019 ORTHO05D006625 1.0e-166 590.9 491 58.9
Gorai.007G378500 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.8e-166 590.1 504 58.7
ECA247G2036 Erigeron canadensis HOM05D005019 ORTHO05D006625 2.3e-166 589.7 505 57.0
Ah.02g113910 Amaranthus hybridus HOM05D005019 ORTHO05D006625 5.2e-166 588.6 579 54.1
Cpa.g.sc200.5 Carica papaya HOM05D005019 ORTHO05D006625 4.4e-165 585.5 500 58.6
Gohir.A11G329100 Gossypium hirsutum HOM05D005019 ORTHO05D006625 9.8e-165 584.3 556 55.0
Psat1g046760 Pisum sativum HOM05D005019 ORTHO05D006625 1.7e-164 583.6 569 54.5
Gohir.D04G014300 Gossypium hirsutum HOM05D005019 ORTHO05D006625 1.1e-163 580.9 505 57.6
ClCG07G000610 Citrullus lanatus HOM05D005019 ORTHO05D006625 1.4e-163 580.5 491 58.0
Gorai.012G016900 Gossypium raimondii HOM05D005019 ORTHO05D006625 1.4e-163 580.5 505 57.8
DCAR_002684 Daucus carota HOM05D005019 ORTHO05D006625 2.4e-163 579.7 572 53.8
Lsat_1_v5_gn_9_9921 Lactuca sativa HOM05D005019 ORTHO05D006625 3.1e-163 579.3 503 57.9
Psat1g214520 Pisum sativum HOM05D005019 ORTHO05D006625 7.0e-163 578.2 569 54.1
HanXRQChr14g0454081 Helianthus annuus HOM05D005019 ORTHO05D006625 2.0e-162 576.6 506 57.3
Lj1g0019097 Lotus japonicus HOM05D005019 ORTHO05D006625 4.5e-162 575.5 560 54.1
Aa31LG11G14850 Aethionema arabicum HOM05D005019 ORTHO05D006625 1.3e-161 573.9 570 53.9
EL10Ac5g11096 Beta vulgaris HOM05D005019 ORTHO05D006625 1.7e-161 573.5 546 55.5
Carub.0006s1224 Capsella rubella HOM05D005019 ORTHO05D006625 1.7e-161 573.5 578 54.0
Thhalv10013183m.g Eutrema salsugineum HOM05D005019 ORTHO05D006625 2.3e-161 573.2 571 54.1
Sabra05G0167700 Salix brachista HOM05D005019 ORTHO05D006625 5.0e-161 572.0 523 54.7
AT5G14050 Arabidopsis thaliana HOM05D005019 ORTHO05D006625 8.6e-161 571.2 572 55.1
Sp6g29950 Schrenkiella parvula HOM05D005019 ORTHO05D006625 1.9e-160 570.1 526 56.5
THA.LOC104806394 Tarenaya hassleriana HOM05D005019 ORTHO05D006625 4.7e-159 565.5 508 58.5
AL6G24710 Arabidopsis lyrata HOM05D005019 ORTHO05D006625 2.3e-158 563.1 566 53.9
Lsat_1_v5_gn_8_3120 Lactuca sativa HOM05D005019 ORTHO05D006625 2.3e-158 563.1 568 53.7
AUR62037688 Chenopodium quinoa HOM05D005019 ORTHO05D006625 4.0e-158 562.4 569 53.4
Hund02608 Selenicereus undatus HOM05D005019 ORTHO05D006625 4.0e-158 562.4 567 52.4
CSS0021329 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.2e-157 560.8 507 57.4
PSO210G0391 Papaver somniferum HOM05D005019 ORTHO05D006625 1.3e-156 557.4 576 52.6
AUR62008493 Chenopodium quinoa HOM05D005019 ORTHO05D006625 6.4e-156 555.1 567 53.4
HPP92_026109 Vanilla planifolia HOM05D005019 ORTHO05D006625 1.1e-155 554.3 522 54.6
GSVIVG01003806001 Vitis vinifera HOM05D005019 ORTHO05D006625 1.1e-155 554.3 574 52.1
CARHR199310 Cardamine hirsuta HOM05D005019 ORTHO05D006625 9.2e-155 551.2 569 52.4
PSO210G5187 Papaver somniferum HOM05D005019 ORTHO05D006625 9.2e-155 551.2 573 52.4
RcHm_v2.0_Chr7g0205871 Rosa chinensis HOM05D005019 ORTHO05D006625 4.6e-154 548.9 429 62.7
ATR0564G197 Amborella trichopoda HOM05D005019 ORTHO05D006625 2.3e-153 546.6 574 49.5
Aqoxy5G00344 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 6.6e-153 545.0 504 55.0
Gohir.A05G401500 Gossypium hirsutum HOM05D005019 ORTHO05D006625 6.6e-153 545.0 505 55.6
Aqoxy6G01670 Aquilegia oxysepala HOM05D005019 ORTHO05D006625 1.5e-152 543.9 504 55.0
Zm00001eb227850 Zea mays HOM05D005019 ORTHO05D006625 7.5e-149 531.6 583 50.9
AUR62021601 Chenopodium quinoa HOM05D005019 ORTHO05D006625 2.2e-148 530.0 570 51.9
MBI12_g17287_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 4.9e-148 528.9 528 52.8
Os07g0603200 Oryza sativa ssp. japonica HOM05D005019 ORTHO05D006625 1.4e-147 527.3 505 55.8
vmacro14869 Vaccinium macrocarpon HOM05D005019 ORTHO05D006625 1.2e-146 524.2 492 53.9
SHI13722 Sapria himalayana HOM05D005019 ORTHO05D006625 6.6e-145 518.5 512 52.1
AUR62025557 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.9e-144 516.9 462 56.9
Lj6g0023367 Lotus japonicus HOM05D005019 ORTHO05D006625 3.1e-142 509.6 547 51.0
Thecc.05G016300 Theobroma cacao HOM05D005019 ORTHO05D006625 1.2e-138 497.7 423 57.7
Hma1.2p1_1029F.1_g249600 Hydrangea macrophylla HOM05D005019 ORTHO05D006625 2.0e-133 480.3 347 65.4
SEGI_19346 Sequoiadendron giganteum HOM05D005019 ORTHO05D006625 7.6e-133 478.4 546 47.6
CDE04G3201 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 6.2e-127 458.8 461 51.6
HPP92_022900 Vanilla planifolia HOM05D005019 ORTHO05D006625 8.1e-127 458.4 345 62.6
Ciclev10006829m.g Citrus clementina HOM05D005019 ORTHO05D006625 2.0e-125 453.8 500 51.0
AagrBONN_evm.TU.Sc2ySwM_362.2571 Anthoceros agrestis HOM05D005019 ORTHO05D006625 9.6e-120 434.9 457 48.6
Mapoly0051s0055 Marchantia polymorpha HOM05D005019 ORTHO05D006625 2.1e-119 433.7 525 44.2
CDE02G2819 Ceratophyllum demersum HOM05D005019 ORTHO05D006625 5.3e-110 402.5 480 46.2
SMO356G0724 Selaginella moellendorffii HOM05D005019 ORTHO05D006625 4.9e-108 396.0 528 44.7
Pp3c26_4890 Physcomitrium patens HOM05D005019 ORTHO05D006625 1.2e-106 391.3 443 47.6
CBR_g21842 Chara braunii HOM05D005019 ORTHO05D006625 2.1e-103 380.6 528 39.6
Rhsim01G0269300 Rhododendron simsii HOM05D005019 ORTHO05D006625 1.1e-96 358.2 258 65.1
QL02p075842 Quercus lobata HOM05D005019 ORTHO05D006625 1.8e-89 334.3 538 38.5
Actinidia24938 Actinidia chinensis HOM05D005019 ORTHO05D006625 6.5e-84 315.8 464 42.2
Cre06.g255950 Chlamydomonas reinhardtii HOM05D005019 ORTHO05D006625 1.8e-81 307.8 477 39.6
AagrBONN_evm.TU.Sc2ySwM_228.5554 Anthoceros agrestis HOM05D005019 ORTHO05D006625 1.4e-75 288.1 310 47.4
AUR62008687 Chenopodium quinoa HOM05D005019 ORTHO05D006625 1.4e-75 288.1 513 37.0
MBI17_g40264_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D006625 4.4e-72 276.6 302 50.0
CSS0011909 Camellia sinensis var. sinensis HOM05D005019 ORTHO05D006625 1.4e-70 271.6 502 36.1
MBI17_g13392_MAGBIO Magnolia biondii HOM05D005019 ORTHO05D012924 6.8e-65 252.7 335 43.9
MCO01G264 Micromonas commoda HOM05D005019 ORTHO05D006625 3.5e-61 240.4 473 33.6
PRCOL_00000196 Prasinoderma coloniale HOM05D005019 ORTHO05D006625 2.2e-60 237.7 326 39.6
BcaNung06034 Brassica carinata HOM05D005019 ORTHO05D006625 4.8e-55 219.9 237 51.5
TAR383G0651 Trochodendron aralioides HOM05D005019 ORTHO05D006625 3.0e-36 157.5 575 27.1
BcaB01g06348 Brassica carinata HOM05D005019 ORTHO05D006625 2.5e-35 154.5 251 41.8
Cfa024923 Carpinus fangiana HOM05D005019 ORTHO05D126389 4.4e-32 143.7 549 25.7
MD05G1205300 Malus domestica HOM05D005019 ORTHO05D048639 2.6e-24 117.9 168 43.5
QL02p076237 Quercus lobata HOM05D005019 ORTHO05D006625 4.9e-15 87.0 92 55.4
Zm00001eb227870 Zea mays HOM05D005019 ORTHO05D048639 6.2e-10 70.1 72 51.4
Pp3c20_7280 Physcomitrium patens HOM05D012385 ORTHO05D014380 4.9e-07 60.5 187 26.7
Lalb_Chr03g0041211 Lupinus albus HOM05D000997 ORTHO05D000828 9.3e-06 56.2 274 24.1


User provided reference genes

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