Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g4334 Utricularia gibba HOM05D000484 ORTHO05D024848 2.4e-76 289.3 208 100.0
Peaxi162Scf00407g00625 Petunia axillaris HOM05D000484 ORTHO05D000346 1.4e-23 114.0 105 52.4
Nitab4.5_0002373g0070 Nicotiana tabacum HOM05D000484 ORTHO05D000346 4.2e-20 102.4 103 50.5
Nitab4.5_0003314g0060 Nicotiana tabacum HOM05D000484 ORTHO05D000346 1.2e-19 100.9 103 49.5
Nn6g35214 Nelumbo nucifera HOM05D000484 ORTHO05D000346 4.6e-19 99.0 99 53.5
TAR623G0397 Trochodendron aralioides HOM05D000484 ORTHO05D000346 6.0e-19 98.6 101 50.5
vmacro07321 Vaccinium macrocarpon HOM05D000484 ORTHO05D000346 2.3e-18 96.7 100 53.0
DCAR_015010 Daucus carota HOM05D000484 ORTHO05D000346 6.6e-18 95.1 98 46.9
CAN.G501.8 Capsicum annuum HOM05D000484 ORTHO05D000346 2.5e-17 93.2 96 53.1
Ciclev10011083m.g Citrus clementina HOM05D000484 ORTHO05D000346 2.5e-17 93.2 99 49.5
HanXRQChr13g0400701 Helianthus annuus HOM05D000484 ORTHO05D000346 2.5e-17 93.2 101 46.5
Oeu041476.1 Olea europaea HOM05D000484 ORTHO05D000346 7.3e-17 91.7 93 51.6
arahy.Tifrunner.gnm1.ann1.F8G62F Arachis hypogaea HOM05D000484 ORTHO05D000346 9.6e-17 91.3 99 47.5
arahy.Tifrunner.gnm1.ann1.YDD7G1 Arachis hypogaea HOM05D000484 ORTHO05D000346 9.6e-17 91.3 99 47.5
Duzib093G0318 Durio zibethinus HOM05D000484 ORTHO05D000346 9.6e-17 91.3 99 49.5
Nitab4.5_0000527g0090 Nicotiana tabacum HOM05D000484 ORTHO05D000346 9.6e-17 91.3 97 50.5
Eucgr.A01618 Eucalyptus grandis HOM05D000484 ORTHO05D000346 2.1e-16 90.1 101 46.5
SalBow3G0649 Salvia bowleyana HOM05D000484 ORTHO05D000346 2.1e-16 90.1 93 50.5
Nitab4.5_0000349g0060 Nicotiana tabacum HOM05D000484 ORTHO05D000346 2.8e-16 89.7 97 53.6
Glyma.13G146700 Glycine max HOM05D000484 ORTHO05D000346 4.8e-16 89.0 103 49.5
Hma1.2p1_0547F.1_g176510 Hydrangea macrophylla HOM05D000484 ORTHO05D000346 8.1e-16 88.2 95 49.5
Ca_06428_v3 Cicer arietinum L. HOM05D000484 ORTHO05D000346 1.4e-15 87.4 102 48.0
Lj1g0011172 Lotus japonicus HOM05D000484 ORTHO05D000346 2.4e-15 86.7 62 61.3
Sabra06G0095400 Salix brachista HOM05D000484 ORTHO05D000346 2.4e-15 86.7 97 49.5
CANSAT80G1000 Cannabis sativa HOM05D000484 ORTHO05D000346 3.1e-15 86.3 98 48.0
Gohir.A04G070100 Gossypium hirsutum HOM05D000484 ORTHO05D000346 3.1e-15 86.3 101 45.5
Gohir.D04G108600 Gossypium hirsutum HOM05D000484 ORTHO05D000346 3.1e-15 86.3 99 46.5
Gorai.009G412700 Gossypium raimondii HOM05D000484 ORTHO05D000346 3.1e-15 86.3 99 46.5
HanXRQChr07g0186211 Helianthus annuus HOM05D000484 ORTHO05D000346 3.1e-15 86.3 101 45.5
Phvul.001G181400 Phaseolus vulgaris HOM05D000484 ORTHO05D000346 3.1e-15 86.3 105 44.8
Lalb_Chr01g0018581 Lupinus albus HOM05D000484 ORTHO05D000346 4.0e-15 85.9 106 46.2
PGR004G2655 Punica granatum HOM05D000484 ORTHO05D000346 4.0e-15 85.9 97 48.5
CSS0050154 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 5.3e-15 85.5 101 49.5
GSVIVG01033689001 Vitis vinifera HOM05D000484 ORTHO05D000346 5.3e-15 85.5 98 46.9
Potri.006G121200 Populus trichocarpa HOM05D000484 ORTHO05D000346 6.9e-15 85.1 98 48.0
Medtr1g062740 Medicago truncatula HOM05D000484 ORTHO05D000346 1.2e-14 84.3 104 46.2
arahy.Tifrunner.gnm1.ann1.8AIE61 Arachis hypogaea HOM05D000484 ORTHO05D000346 1.5e-14 84.0 101 48.5
CSS0033192 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 1.5e-14 84.0 85 50.6
ECA233G3470 Erigeron canadensis HOM05D000484 ORTHO05D000346 1.5e-14 84.0 101 42.6
Migut.L01722 Erythranthe guttata HOM05D000484 ORTHO05D000346 1.5e-14 84.0 107 44.9
Manes.08G013400 Manihot esculenta HOM05D000484 ORTHO05D000346 1.5e-14 84.0 93 47.3
arahy.Tifrunner.gnm1.ann1.063DHX Arachis hypogaea HOM05D000484 ORTHO05D000346 2.0e-14 83.6 101 48.5
ClCG10G019860 Citrullus lanatus HOM05D000484 ORTHO05D000346 2.0e-14 83.6 96 45.8
MELO3C009382.2 Cucumis melo HOM05D000484 ORTHO05D000346 2.0e-14 83.6 95 46.3
Solyc09g008480.4 Solanum lycopersicum HOM05D000484 ORTHO05D000346 2.0e-14 83.6 101 41.6
Prupe.7G125200 Prunus persica HOM05D000484 ORTHO05D000346 3.4e-14 82.8 132 50.0
TPR.G21002 Trifolium pratense HOM05D000484 ORTHO05D000346 3.4e-14 82.8 99 46.5
VMungo0720G1209 Vigna mungo HOM05D000484 ORTHO05D000346 3.4e-14 82.8 101 45.5
CAN.G1038.15 Capsicum annuum HOM05D000484 ORTHO05D000346 4.5e-14 82.4 99 44.4
CsaV3_3G036240 Cucumis sativus L. HOM05D000484 ORTHO05D000346 4.5e-14 82.4 95 45.3
ECA233G0088 Erigeron canadensis HOM05D000484 ORTHO05D000346 4.5e-14 82.4 101 42.6
AUR62026951 Chenopodium quinoa HOM05D000484 ORTHO05D000346 5.8e-14 82.0 62 59.7
FAN02G2726 Fragaria x ananassa HOM05D000484 ORTHO05D000346 5.8e-14 82.0 99 45.5
Thecc.05G072000 Theobroma cacao HOM05D000484 ORTHO05D000346 5.8e-14 82.0 94 46.8
FAN05G1985 Fragaria x ananassa HOM05D000484 ORTHO05D000346 1.3e-13 80.9 98 45.9
FAN05G5258 Fragaria x ananassa HOM05D000484 ORTHO05D000346 1.3e-13 80.9 98 45.9
AUR62043426 Chenopodium quinoa HOM05D000484 ORTHO05D000346 1.7e-13 80.5 62 58.1
AUR62044426 Chenopodium quinoa HOM05D000484 ORTHO05D000346 1.7e-13 80.5 62 58.1
COL.COLO4_26908 Corchorus olitorius HOM05D000484 ORTHO05D000346 1.7e-13 80.5 95 46.3
FvH4_6g16890 Fragaria vesca HOM05D000484 ORTHO05D000346 1.7e-13 80.5 98 45.9
FAN14G3487 Fragaria x ananassa HOM05D000484 ORTHO05D024848 1.7e-13 80.5 98 45.9
TWI77G0783 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 1.7e-13 80.5 93 44.1
Gohir.A01G212200 Gossypium hirsutum HOM05D000484 ORTHO05D000346 2.2e-13 80.1 97 46.4
FAN09G1819 Fragaria x ananassa HOM05D000484 ORTHO05D000346 2.9e-13 79.7 98 44.9
Gohir.D01G200900 Gossypium hirsutum HOM05D000484 ORTHO05D000346 2.9e-13 79.7 95 46.3
Gorai.002G245600 Gossypium raimondii HOM05D000484 ORTHO05D000346 2.9e-13 79.7 95 46.3
PSO339G5360 Papaver somniferum HOM05D000484 ORTHO05D000346 2.9e-13 79.7 86 46.5
MSTRG.26676 Avicennia marina HOM05D000484 ORTHO05D000346 3.8e-13 79.3 87 49.4
RcHm_v2.0_Chr3g0470911 Rosa chinensis HOM05D000484 ORTHO05D000346 3.8e-13 79.3 98 43.9
Sed0005248 Sechium edule HOM05D000484 ORTHO05D000346 3.8e-13 79.3 97 42.3
Dinv35816 Davidia involucrata HOM05D000484 ORTHO05D000346 4.9e-13 79.0 88 50.0
Glyma.03G186300 Glycine max HOM05D000484 ORTHO05D000346 4.9e-13 79.0 100 45.0
Lsat_1_v5_gn_6_28461 Lactuca sativa HOM05D000484 ORTHO05D000346 4.9e-13 79.0 99 41.4
VMungo1383G3162 Vigna mungo HOM05D000484 ORTHO05D000346 4.9e-13 79.0 99 44.4
Aa31LG3G2400 Aethionema arabicum HOM05D000484 ORTHO05D000346 6.4e-13 78.6 86 44.2
PSO801G0700 Papaver somniferum HOM05D000484 ORTHO05D000346 1.1e-12 77.8 86 45.3
Sed0025646 Sechium edule HOM05D000484 ORTHO05D000346 1.1e-12 77.8 93 44.1
Sopen09g003310 Solanum pennellii HOM05D000484 ORTHO05D000346 1.1e-12 77.8 99 41.4
Lj2A117T95 Lonicera japonica HOM05D000484 ORTHO05D000346 1.4e-12 77.4 79 50.6
Psat6g075800 Pisum sativum HOM05D000484 ORTHO05D000346 1.4e-12 77.4 99 44.4
MD12G1106400 Malus domestica HOM05D000484 ORTHO05D000346 1.9e-12 77.0 98 40.8
MD04G1088700 Malus domestica HOM05D000484 ORTHO05D000346 2.4e-12 76.6 98 40.8
Rhsim03G0089000 Rhododendron simsii HOM05D000484 ORTHO05D000346 3.2e-12 76.3 88 50.0
Duzib106G0652 Durio zibethinus HOM05D000484 ORTHO05D000346 7.1e-12 75.1 96 44.8
Lalb_Chr21g0315111 Lupinus albus HOM05D000484 ORTHO05D000346 9.3e-12 74.7 99 43.4
Sopen10g035700 Solanum pennellii HOM05D000484 ORTHO05D000346 9.3e-12 74.7 87 44.8
Solyc10g086320.2 Solanum lycopersicum HOM05D000484 ORTHO05D000346 1.2e-11 74.3 87 44.8
Sc20g0005700 Simmondsia chinensis HOM05D000484 ORTHO05D000346 1.6e-11 73.9 73 49.3
Sp3g08270 Schrenkiella parvula HOM05D000484 ORTHO05D000346 3.5e-11 72.8 85 42.4
Os02g0822500 Oryza sativa ssp. japonica HOM05D000484 ORTHO05D000346 4.6e-11 72.4 56 57.1
CARHR084430 Cardamine hirsuta HOM05D000484 ORTHO05D000346 6.0e-11 72.0 84 45.2
Thhalv10020082m.g Eutrema salsugineum HOM05D000484 ORTHO05D000346 6.0e-11 72.0 81 43.2
AL3G21180 Arabidopsis lyrata HOM05D000484 ORTHO05D000346 7.9e-11 71.6 79 45.6
QL07p042195 Quercus lobata HOM05D000484 ORTHO05D000346 7.9e-11 71.6 86 46.5
PGSC0003DMG402003899 Solanum tuberosum HOM05D000484 ORTHO05D024848 1.0e-10 71.2 92 40.2
Dinv37342 Davidia involucrata HOM05D000484 ORTHO05D000346 2.3e-10 70.1 83 47.0
Peaxi162Scf00435g01211 Petunia axillaris HOM05D000484 ORTHO05D000346 3.9e-10 69.3 86 43.0
Cc06_g04570 Coffea canephora HOM05D000484 ORTHO05D000346 5.1e-10 68.9 88 43.2
TAR369G0124 Trochodendron aralioides HOM05D000484 ORTHO05D000346 5.1e-10 68.9 86 46.5
HPP92_020823 Vanilla planifolia HOM05D000484 ORTHO05D000346 2.5e-09 66.6 44 61.4
TWI74G0361 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 3.3e-09 66.2 86 40.7
MSTRG.5778 Avicennia marina HOM05D000484 ORTHO05D000346 4.3e-09 65.9 69 53.6
BraA05t22701Z Brassica rapa HOM05D000484 ORTHO05D000346 4.3e-09 65.9 83 41.0
arahy.Tifrunner.gnm1.ann1.WMGI63 Arachis hypogaea HOM05D000484 ORTHO05D000346 1.3e-08 64.3 63 50.8
Actinidia26651 Actinidia chinensis HOM05D000484 ORTHO05D000346 1.6e-08 63.9 85 45.9
BcaC05g29719 Brassica carinata HOM05D000484 ORTHO05D000346 1.6e-08 63.9 82 40.2
A05p39120 Brassica napus HOM05D000484 ORTHO05D000346 1.6e-08 63.9 82 40.2
AUR62004801 Chenopodium quinoa HOM05D000484 ORTHO05D000346 3.7e-08 62.8 51 54.9
AUR62039038 Chenopodium quinoa HOM05D000484 ORTHO05D000346 3.7e-08 62.8 51 54.9
arahy.Tifrunner.gnm1.ann1.90S4QE Arachis hypogaea HOM05D000484 ORTHO05D000346 4.8e-08 62.4 63 49.2
EL10Ac4g08962 Beta vulgaris HOM05D000484 ORTHO05D000346 6.2e-08 62.0 74 40.5
Psat7g041560 Pisum sativum HOM05D000484 ORTHO05D000346 6.2e-08 62.0 63 39.7
Aqoxy2G01649 Aquilegia oxysepala HOM05D000484 ORTHO05D000346 8.1e-08 61.6 72 50.0
AT3G09920 Arabidopsis thaliana HOM05D000484 ORTHO05D000346 8.1e-08 61.6 76 40.8
Oeu056531.1 Olea europaea HOM05D000484 ORTHO05D000346 8.1e-08 61.6 82 45.1
Migut.J00457 Erythranthe guttata HOM05D000484 ORTHO05D000346 1.4e-07 60.8 84 40.5
Atru.chr8.1746 Acer truncatum HOM05D000484 ORTHO05D000346 3.1e-07 59.7 86 41.9
Glyma.10G060000 Glycine max HOM05D000484 ORTHO05D000346 4.0e-07 59.3 83 47.0
Lalb_Chr08g0237801 Lupinus albus HOM05D000484 ORTHO05D000346 4.0e-07 59.3 40 57.5
QL09p037055 Quercus lobata HOM05D000484 ORTHO05D000346 4.0e-07 59.3 88 38.6
CSS0038983 Camellia sinensis var. sinensis HOM05D000484 ORTHO05D000346 5.3e-07 58.9 73 43.8
CiPaw.04G179400 Carya illinoinensis HOM05D000484 ORTHO05D000346 9.0e-07 58.2 55 47.3
Lj3C990G18 Lonicera japonica HOM05D000484 ORTHO05D000346 9.0e-07 58.2 68 44.1
Cfa021475 Carpinus fangiana HOM05D000484 ORTHO05D000346 1.2e-06 57.8 83 39.8
HPP92_001381 Vanilla planifolia HOM05D000484 ORTHO05D000346 1.2e-06 57.8 51 51.0
CiPaw.09G002800 Carya illinoinensis HOM05D000484 ORTHO05D000346 2.0e-06 57.0 83 41.0
Manes.12G083800 Manihot esculenta HOM05D000484 ORTHO05D000346 2.0e-06 57.0 43 51.2
TWI56G0700 Tripterygium wilfordii HOM05D000484 ORTHO05D000346 2.0e-06 57.0 37 62.2
Glyma.06G159500 Glycine max HOM05D000484 ORTHO05D000346 3.4e-06 56.2 32 65.6
Lalb_Chr11g0065731 Lupinus albus HOM05D000484 ORTHO05D000346 5.8e-06 55.5 52 46.2
PSO384G2751 Papaver somniferum HOM05D000484 ORTHO05D000346 5.8e-06 55.5 47 51.1
SGA_v2.0_scaffold24G10499 Striga asiatica HOM05D000484 ORTHO05D000346 5.8e-06 55.5 42 52.4
PSO339G4184 Papaver somniferum HOM05D000484 ORTHO05D000346 9.9e-06 54.7 48 47.9
unitig_37.g12788 Utricularia gibba HOM05D000484 ORTHO05D000346 9.9e-06 54.7 64 43.8


User provided reference genes

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