Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 1.8e-181 639.0 306 100.0
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 5.2e-144 514.6 359 73.8
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 3.1e-96 355.9 320 57.2
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 4.0e-96 355.5 331 52.6
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 5.2e-96 355.1 320 55.0
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 2.6e-95 352.8 333 54.4
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 2.2e-94 349.7 331 52.3
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.2e-94 349.7 331 54.7
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 8.4e-94 347.8 330 52.7
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.1e-93 347.4 248 64.9
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 2.4e-93 346.3 334 54.2
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 3.2e-93 345.9 320 54.7
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 3.2e-93 345.9 320 55.3
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 7.1e-93 344.7 296 58.4
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.7e-92 342.8 320 52.8
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 7.8e-92 341.3 320 54.1
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 1.0e-91 340.9 320 54.4
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.7e-91 340.1 320 52.5
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 1.7e-91 340.1 320 53.8
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 2.3e-91 339.7 320 52.2
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 3.9e-91 339.0 342 52.0
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 3.9e-91 339.0 334 50.9
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 1.1e-90 337.4 334 51.5
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 4.3e-90 335.5 330 51.5
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.6e-90 335.1 296 55.4
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.2e-89 334.0 320 52.8
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 1.2e-89 334.0 297 55.2
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.2e-89 334.0 325 52.0
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 1.6e-89 333.6 301 56.1
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 2.1e-89 333.2 318 52.5
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 2.8e-89 332.8 342 51.5
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 2.8e-89 332.8 372 47.0
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 3.6e-89 332.4 299 55.2
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 3.6e-89 332.4 299 55.2
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 4.7e-89 332.0 320 51.2
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.2e-89 331.6 334 50.0
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 6.2e-89 331.6 334 50.0
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 6.2e-89 331.6 321 50.2
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.1e-89 331.3 296 57.8
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 1.1e-88 330.9 320 50.9
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.1e-88 330.9 302 55.0
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.1e-88 330.9 296 55.4
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 1.4e-88 330.5 322 51.6
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.4e-88 330.5 296 55.1
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.4e-88 330.5 296 55.7
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.8e-88 330.1 321 52.3
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.8e-88 330.1 331 51.4
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 2.4e-88 329.7 295 56.3
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.1e-88 329.3 321 49.8
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 3.1e-88 329.3 320 51.6
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 3.1e-88 329.3 296 55.1
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 4.0e-88 328.9 321 51.7
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 4.0e-88 328.9 323 52.0
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.3e-88 328.6 296 54.7
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 9.0e-88 327.8 334 49.7
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 9.0e-88 327.8 320 51.2
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 9.0e-88 327.8 335 50.7
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 1.2e-87 327.4 321 49.8
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.2e-87 327.4 321 50.8
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 1.2e-87 327.4 341 49.3
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 1.5e-87 327.0 334 49.4
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 4.4e-87 325.5 322 50.9
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 4.4e-87 325.5 321 50.5
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 5.8e-87 325.1 320 51.9
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 9.9e-87 324.3 296 53.7
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 1.7e-86 323.6 321 51.1
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.7e-86 323.6 322 50.9
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 2.2e-86 323.2 323 50.8
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 3.8e-86 322.4 296 54.1
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 4.9e-86 322.0 328 50.3
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 1.1e-85 320.9 327 50.5
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 1.1e-85 320.9 296 54.1
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 2.4e-85 319.7 320 50.9
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 2.4e-85 319.7 296 54.1
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 4.2e-85 318.9 327 50.2
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 9.3e-85 317.8 299 53.2
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 1.6e-84 317.0 297 52.5
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.6e-84 317.0 295 52.9
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.1e-84 316.6 295 53.6
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 4.6e-84 315.5 323 49.8
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 6.0e-84 315.1 296 53.0
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 1.3e-83 313.9 322 49.1
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.9e-83 312.4 290 53.8
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 3.9e-83 312.4 296 52.0
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 5.1e-83 312.0 308 50.0
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 6.6e-83 311.6 317 50.2
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 6.6e-83 311.6 324 48.8
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 1.9e-82 310.1 296 51.7
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 3.3e-82 309.3 320 48.1
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 5.6e-82 308.5 307 49.5
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.3e-81 307.4 339 46.9
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.8e-81 305.4 321 48.9
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 8.1e-81 304.7 327 48.6
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.1e-80 304.3 334 47.6
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 2.4e-80 303.1 297 50.2
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 6.9e-80 301.6 213 64.8
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 1.2e-79 300.8 320 47.8
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.5e-79 300.4 334 47.3
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 1.5e-79 300.4 323 48.3
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 2.0e-79 300.1 214 64.0
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.6e-79 299.7 322 47.2
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 4.5e-79 298.9 369 43.6
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 5.8e-79 298.5 320 47.8
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 7.6e-79 298.1 320 48.4
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 9.9e-79 297.7 320 47.5
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 9.9e-79 297.7 320 48.1
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 9.9e-79 297.7 300 49.7
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 1.3e-78 297.4 297 50.8
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 1.3e-78 297.4 307 49.2
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 2.9e-78 296.2 297 50.8
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.9e-78 295.4 412 40.3
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 6.4e-78 295.0 297 50.8
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 6.4e-78 295.0 321 48.0
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 1.9e-77 293.5 320 47.5
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.9e-77 293.5 297 49.5
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 3.2e-77 292.7 297 50.2
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 3.2e-77 292.7 297 50.2
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.2e-77 292.4 340 44.7
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 5.4e-77 292.0 297 50.5
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 7.1e-77 291.6 297 49.8
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 1.2e-76 290.8 297 50.2
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 1.2e-76 290.8 297 50.2
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 1.2e-76 290.8 297 50.2
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 1.2e-76 290.8 265 57.0
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.2e-76 290.8 297 49.8
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.5e-76 289.3 331 45.9
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.0e-75 287.7 280 52.5
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 3.0e-75 286.2 330 45.2
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 3.0e-75 286.2 329 45.3
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.8e-73 278.9 337 44.2
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 1.4e-72 277.3 320 47.5
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 3.1e-72 276.2 264 54.9
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 6.9e-72 275.0 281 50.2
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 6.9e-72 275.0 297 49.2
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.1e-69 267.7 201 59.2
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.4e-69 267.3 305 45.9
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.9e-69 266.9 311 45.0
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.1e-66 257.7 302 46.4
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.6e-63 246.5 323 39.3
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 1.9e-61 240.4 271 48.0
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 1.2e-60 237.7 339 37.8
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 1.6e-60 237.3 295 41.4
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 8.7e-59 231.5 298 39.3
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.4e-56 224.2 223 51.1
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 1.6e-52 210.7 308 39.9
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 3.6e-52 209.5 248 46.4
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.1e-32 144.8 176 48.3
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 1.0e-30 138.3 204 32.8
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 5.5e-21 105.9 130 44.6
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 2.7e-20 103.6 94 50.0
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 4.7e-20 102.8 70 61.4
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.0e-19 101.7 75 57.3
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.7e-17 93.2 54 83.3
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 4.1e-16 89.7 151 38.4
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 9.1e-16 88.6 58 72.4
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 1.2e-15 88.2 61 60.7
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 6.6e-14 82.4 54 70.4
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.7e-12 76.3 46 73.9
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 1.0e-11 75.1 47 72.3
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 1.4e-11 74.7 47 72.3
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.7e-09 67.8 80 45.0
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 8.3e-09 65.5 77 44.2
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 1.8e-08 64.3 36 75.0
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.6e-07 61.2 39 69.2
ATR0681G284 Amborella trichopoda HOM05D003877 ORTHO05D038325 8.6e-06 55.5 32 56.2
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 8.6e-06 55.5 76 40.8


User provided reference genes

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