Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3983 Utricularia gibba HOM05D004248 ORTHO05D004978 0.0e+00 1261.1 639 100.0
MSTRG.5896 Avicennia marina HOM05D004248 ORTHO05D004978 2.6e-145 520.0 753 45.7
Oeu052620.1 Olea europaea HOM05D004248 ORTHO05D004978 8.3e-144 515.0 756 44.0
Migut.J00705 Erythranthe guttata HOM05D004248 ORTHO05D004978 5.2e-138 495.7 734 44.1
Dinv05301 Davidia involucrata HOM05D004248 ORTHO05D004978 1.2e-131 474.6 768 41.3
SGA_v2.0_scaffold13G06632 Striga asiatica HOM05D004248 ORTHO05D004978 1.8e-130 470.7 818 39.9
Dinv31757 Davidia involucrata HOM05D004248 ORTHO05D004978 1.3e-125 454.5 733 41.7
ECA247G2914 Erigeron canadensis HOM05D004248 ORTHO05D004978 5.6e-124 449.1 753 38.8
Sopen01g003120 Solanum pennellii HOM05D004248 ORTHO05D004978 5.6e-124 449.1 759 38.5
Solyc01g007140.3 Solanum lycopersicum HOM05D004248 ORTHO05D004978 7.3e-124 448.7 759 38.5
CSS0019025 Camellia sinensis var. sinensis HOM05D004248 ORTHO05D004978 3.4e-121 439.9 757 38.8
Manes.09G044700 Manihot esculenta HOM05D004248 ORTHO05D004978 1.7e-120 437.6 748 39.2
HanXRQChr17g0549301 Helianthus annuus HOM05D004248 ORTHO05D004978 1.9e-119 434.1 733 39.8
Rhsim03G0064800 Rhododendron simsii HOM05D004248 ORTHO05D004978 1.9e-119 434.1 759 38.9
CAN.G574.19 Capsicum annuum HOM05D004248 ORTHO05D004978 3.2e-119 433.3 759 38.7
Gohir.D09G130900 Gossypium hirsutum HOM05D004248 ORTHO05D004978 9.2e-119 431.8 747 38.2
Gorai.006G149600 Gossypium raimondii HOM05D004248 ORTHO05D004978 1.6e-118 431.0 749 38.6
QL07p036804 Quercus lobata HOM05D004248 ORTHO05D004978 2.0e-118 430.6 756 38.9
Duzib093G0037 Durio zibethinus HOM05D004248 ORTHO05D004978 3.5e-118 429.9 756 38.9
Manes.09G045100 Manihot esculenta HOM05D004248 ORTHO05D004978 1.0e-117 428.3 752 38.7
Atru.chr9.697 Acer truncatum HOM05D004248 ORTHO05D004978 1.7e-117 427.6 742 39.2
DCAR_020706 Daucus carota HOM05D004248 ORTHO05D004978 3.9e-117 426.4 783 37.7
Cfa020026 Carpinus fangiana HOM05D004248 ORTHO05D004978 6.6e-117 425.6 754 38.5
Actinidia06045 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.1e-116 424.9 764 38.4
Gohir.A09G134400 Gossypium hirsutum HOM05D004248 ORTHO05D004978 1.1e-116 424.9 747 38.2
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 2.5e-116 423.7 723 39.8
Ciclev10011038m.g Citrus clementina HOM05D004248 ORTHO05D004978 7.3e-116 422.2 746 39.0
Potri.001G208900 Populus trichocarpa HOM05D004248 ORTHO05D004978 7.3e-116 422.2 757 38.6
Potri.011G095700 Populus trichocarpa HOM05D004248 ORTHO05D004978 9.5e-116 421.8 757 38.2
Haze_20188 Corylus avellana HOM05D004248 ORTHO05D004978 1.6e-115 421.0 781 37.6
Thecc.05G104000 Theobroma cacao HOM05D004248 ORTHO05D004978 8.1e-115 418.7 750 38.9
CiPaw.10G017100 Carya illinoinensis HOM05D004248 ORTHO05D004978 1.8e-114 417.5 753 37.3
Nn4g22932 Nelumbo nucifera HOM05D004248 ORTHO05D004978 4.0e-114 416.4 760 37.6
Sabra06G0156800 Salix brachista HOM05D004248 ORTHO05D004978 5.2e-114 416.0 752 37.6
MD10G1053900 Malus domestica HOM05D004248 ORTHO05D004978 6.8e-114 415.6 754 37.5
FAN14G1070 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.3e-112 411.4 759 37.7
Actinidia37744 Actinidia chinensis HOM05D004248 ORTHO05D004978 1.7e-112 411.0 798 36.7
RcHm_v2.0_Chr3g0475871 Rosa chinensis HOM05D004248 ORTHO05D004978 1.7e-112 411.0 754 37.3
RcHm_v2.0_Chr1g0331061 Rosa chinensis HOM05D004248 ORTHO05D004978 9.2e-111 405.2 754 36.9
Lj1g0019866 Lotus japonicus HOM05D004248 ORTHO05D004978 2.1e-110 404.1 759 37.2
FAN09G3200 Fragaria x ananassa HOM05D004248 ORTHO05D004978 2.7e-110 403.7 755 37.5
THA.LOC104809952 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 6.0e-110 402.5 762 36.9
vmacro07476 Vaccinium macrocarpon HOM05D004248 ORTHO05D004978 6.0e-110 402.5 761 37.8
Eucgr.E01507 Eucalyptus grandis HOM05D004248 ORTHO05D004978 7.3e-108 395.6 755 36.8
Sc22g0002860 Simmondsia chinensis HOM05D004248 ORTHO05D004978 1.6e-107 394.4 750 36.8
Aqoxy3G00875 Aquilegia oxysepala HOM05D004248 ORTHO05D004978 1.8e-106 391.0 773 36.1
EL10Ac5g12964 Beta vulgaris HOM05D004248 ORTHO05D004978 1.8e-106 391.0 754 35.7
Lalb_Chr20g0111391 Lupinus albus HOM05D004248 ORTHO05D004978 1.5e-105 387.9 755 36.3
Cfa016679 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.4e-105 386.7 742 37.1
AUR62036385 Chenopodium quinoa HOM05D004248 ORTHO05D004978 7.6e-105 385.6 753 36.3
PSO017G5751 Papaver somniferum HOM05D004248 ORTHO05D004978 8.4e-104 382.1 751 35.8
Phvul.008G104000 Phaseolus vulgaris HOM05D004248 ORTHO05D004978 1.9e-103 380.9 751 36.9
Medtr7g106190 Medicago truncatula HOM05D004248 ORTHO05D004978 3.2e-103 380.2 755 36.4
AUR62030747 Chenopodium quinoa HOM05D004248 ORTHO05D004978 9.2e-103 378.6 804 34.3
Prupe.7G095000 Prunus persica HOM05D004248 ORTHO05D004978 9.2e-103 378.6 781 35.6
Hma1.2p1_0079F.1_g041850 Hydrangea macrophylla HOM05D004248 ORTHO05D004978 3.5e-102 376.7 653 39.5
FAN05G1094 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.1e-101 372.9 710 37.5
FAN05G4951 Fragaria x ananassa HOM05D004248 ORTHO05D004978 5.1e-101 372.9 710 37.5
Glyma.07G150100 Glycine max HOM05D004248 ORTHO05D004978 1.5e-100 371.3 756 36.4
PSO478G2311 Papaver somniferum HOM05D004248 ORTHO05D004978 2.5e-100 370.5 755 35.2
Glyma.16G099100 Glycine max HOM05D004248 ORTHO05D004978 1.6e-99 367.9 756 35.8
HanXRQChr06g0164371 Helianthus annuus HOM05D004248 ORTHO05D004978 2.1e-99 367.5 806 34.1
Ca_26380_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 2.8e-99 367.1 766 35.0
arahy.Tifrunner.gnm1.ann1.ZDQ0NF Arachis hypogaea HOM05D004248 ORTHO05D004978 6.2e-99 365.9 752 34.7
Psat3g029120 Pisum sativum HOM05D004248 ORTHO05D004978 1.1e-98 365.2 749 35.1
MD12G1040000 Malus domestica HOM05D004248 ORTHO05D004978 2.6e-97 360.5 815 34.1
AT5G06350 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 5.8e-97 359.4 754 33.6
arahy.Tifrunner.gnm1.ann1.2W33L2 Arachis hypogaea HOM05D004248 ORTHO05D004978 5.8e-97 359.4 771 34.2
Carub.0006s0524 Capsella rubella HOM05D004248 ORTHO05D004978 1.4e-95 354.8 754 34.0
Haze_19699 Corylus avellana HOM05D004248 ORTHO05D004978 1.6e-94 351.3 834 33.0
Lsat_1_v5_gn_3_1160 Lactuca sativa HOM05D004248 ORTHO05D004978 4.6e-94 349.7 745 34.4
FvH4_6g20280 Fragaria vesca HOM05D004248 ORTHO05D004978 6.0e-94 349.4 708 35.2
Aa31sc52G180 Aethionema arabicum HOM05D004248 ORTHO05D004978 7.8e-94 349.0 777 33.3
FAN02G0498 Fragaria x ananassa HOM05D004248 ORTHO05D004978 1.0e-93 348.6 773 34.4
VMungo0647G1936 Vigna mungo HOM05D004248 ORTHO05D004978 8.7e-93 345.5 747 33.7
Thhalv10012647m.g Eutrema salsugineum HOM05D004248 ORTHO05D004978 1.5e-92 344.7 759 34.7
CDE05G1117 Ceratophyllum demersum HOM05D004248 ORTHO05D004978 3.3e-92 343.6 759 32.8
CsaV3_3G040150 Cucumis sativus L. HOM05D004248 ORTHO05D004978 3.3e-92 343.6 705 35.3
Nitab4.5_0002858g0080 Nicotiana tabacum HOM05D004248 ORTHO05D004978 5.6e-92 342.8 563 39.8
Sp6g36500 Schrenkiella parvula HOM05D004248 ORTHO05D004978 5.6e-92 342.8 758 33.5
Sed0013531 Sechium edule HOM05D004248 ORTHO05D004978 7.3e-92 342.4 696 35.8
Sabra01G0161200 Salix brachista HOM05D004248 ORTHO05D004978 8.1e-91 339.0 742 35.0
AT5G27010 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 3.8e-88 330.1 751 33.0
A10p30020 Brassica napus HOM05D004248 ORTHO05D004978 4.9e-88 329.7 755 33.5
C09p70430 Brassica napus HOM05D004248 ORTHO05D004978 6.4e-88 329.3 753 33.6
TPR.G35565 Trifolium pratense HOM05D004248 ORTHO05D004978 8.4e-88 328.9 697 34.9
AL6G38940 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.9e-87 327.8 739 32.5
Ca_09055_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 9.3e-87 325.5 765 33.9
PGR004G2794 Punica granatum HOM05D004248 ORTHO05D004978 2.1e-86 324.3 756 33.5
BraA10t45042Z Brassica rapa HOM05D004248 ORTHO05D004978 4.6e-86 323.2 755 33.1
PGR044G2629 Punica granatum HOM05D004248 ORTHO05D004978 1.0e-85 322.0 723 34.7
BolC9t59789H Brassica oleracea HOM05D004248 ORTHO05D004978 1.3e-85 321.6 753 33.3
BcaC06g32369 Brassica carinata HOM05D004248 ORTHO05D004978 1.8e-85 321.2 755 33.1
BcaNung06319 Brassica carinata HOM05D004248 ORTHO05D004978 3.9e-85 320.1 753 33.2
CARHR207090 Cardamine hirsuta HOM05D004248 ORTHO05D004978 3.9e-85 320.1 749 31.6
HPP92_005875 Vanilla planifolia HOM05D004248 ORTHO05D004978 7.4e-84 315.8 706 34.4
CANSAT01G1742 Cannabis sativa HOM05D004248 ORTHO05D004978 9.6e-84 315.5 756 33.2
AL4G19610 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.9e-79 301.2 750 32.1
Hund14947 Selenicereus undatus HOM05D004248 ORTHO05D004978 2.1e-75 287.7 679 33.0
ClCG10G016230 Citrullus lanatus HOM05D004248 ORTHO05D004978 4.2e-71 273.5 710 32.1
Os04g0466700 Oryza sativa ssp. japonica HOM05D004248 ORTHO05D004978 2.1e-70 271.2 757 30.5
Peaxi162Scf00586g00027 Petunia axillaris HOM05D004248 ORTHO05D004978 1.0e-69 268.9 683 31.8
Atru.chr8.1370 Acer truncatum HOM05D004248 ORTHO05D004978 1.4e-66 258.5 602 33.4
Cc06_g06530 Coffea canephora HOM05D004248 ORTHO05D004978 6.9e-66 256.1 485 35.1
MELO3C009754.2 Cucumis melo HOM05D004248 ORTHO05D004978 7.2e-63 246.1 682 30.5
Oeu036626.1 Olea europaea HOM05D004248 ORTHO05D004978 2.7e-62 244.2 190 68.4
TWI74G1036 Tripterygium wilfordii HOM05D004248 ORTHO05D004978 2.7e-62 244.2 599 32.2
GSVIVG01033953001 Vitis vinifera HOM05D004248 ORTHO05D004978 1.0e-61 242.3 491 35.6
Cc06_g06540 Coffea canephora HOM05D004248 ORTHO05D004978 1.5e-60 238.4 195 64.6
BcaB02g11156 Brassica carinata HOM05D004248 ORTHO05D004978 6.9e-58 229.6 701 30.4
Nitab4.5_0000020g0020 Nicotiana tabacum HOM05D004248 ORTHO05D004978 9.1e-58 229.2 188 63.8
GSVIVG01033954001 Vitis vinifera HOM05D004248 ORTHO05D004978 2.0e-57 228.0 190 63.2
RcHm_v2.0_Chr1g0331071 Rosa chinensis HOM05D004248 ORTHO05D004978 6.5e-56 223.0 502 32.7
Cpa.g.sc104.35 Carica papaya HOM05D004248 ORTHO05D004978 1.1e-55 222.2 490 34.7
Cpa.g.sc104.34 Carica papaya HOM05D004248 ORTHO05D004978 1.4e-53 215.3 197 58.4
AL6G16420 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 1.1e-52 212.2 190 59.5
Oeu036625.1 Olea europaea HOM05D004248 ORTHO05D004978 5.3e-50 203.4 455 35.6
Ah.01g014630 Amaranthus hybridus HOM05D004248 ORTHO05D004978 5.9e-49 199.9 502 28.7
Glyma.16G096800 Glycine max HOM05D004248 ORTHO05D004978 2.9e-48 197.6 179 59.2
ATR0684G083 Amborella trichopoda HOM05D004248 ORTHO05D004978 5.7e-44 183.3 184 52.2
MBI13_g30331_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D004978 1.7e-43 181.8 139 68.3
PGR004G1886 Punica granatum HOM05D004248 ORTHO05D004978 1.1e-42 179.1 618 28.2
AL6G16430 Arabidopsis lyrata HOM05D004248 ORTHO05D004978 7.0e-42 176.4 411 31.4
BcaB02g11160 Brassica carinata HOM05D004248 ORTHO05D004978 3.2e-39 167.5 389 33.4
SHI44568 Sapria himalayana HOM05D004248 ORTHO05D004978 2.0e-36 158.3 152 53.3
SMO114G0040 Selaginella moellendorffii HOM05D004248 ORTHO05D004978 4.4e-36 157.1 670 26.4
AagrBONN_evm.TU.Sc2ySwM_344.4227 Anthoceros agrestis HOM05D004248 ORTHO05D004978 1.7e-35 155.2 176 48.9
Mapoly0023s0084 Marchantia polymorpha HOM05D004248 ORTHO05D004978 6.3e-35 153.3 723 23.8
Ca_30860_v3 Cicer arietinum L. HOM05D004248 ORTHO05D004978 7.0e-34 149.8 221 39.4
Pp3c26_11250 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.2e-33 149.1 192 45.3
Pp3c26_11260 Physcomitrium patens HOM05D004248 ORTHO05D004978 1.2e-33 149.1 192 45.3
ATR0684G087 Amborella trichopoda HOM05D004248 ORTHO05D004978 1.6e-33 148.7 323 33.4
HanXRQChr01g0006711 Helianthus annuus HOM05D004248 ORTHO05D004978 2.3e-29 134.8 147 50.3
MBI13_g30330_MAGBIO Magnolia biondii HOM05D004248 ORTHO05D003073 4.0e-29 134.0 662 24.0
Cre10.g442250 Chlamydomonas reinhardtii HOM05D004248 ORTHO05D004978 6.3e-27 126.7 176 42.0
AT4G04680 Arabidopsis thaliana HOM05D004248 ORTHO05D004978 2.4e-26 124.8 139 48.9
Zm00001eb080310 Zea mays HOM05D004248 ORTHO05D004978 7.0e-26 123.2 608 24.3
Cpa.g.c47797 Carica papaya HOM05D004248 ORTHO05D004978 3.8e-24 117.5 84 69.0
RcHm_v2.0_Chr1g0331091 Rosa chinensis HOM05D004248 ORTHO05D004978 1.5e-23 115.5 107 57.0
Lj1A1051T47 Lonicera japonica HOM05D004248 ORTHO05D004978 1.6e-22 112.1 168 42.3
Medtr5g027350 Medicago truncatula HOM05D004248 ORTHO05D004978 8.0e-22 109.8 492 25.6
Psat5g276400 Pisum sativum HOM05D004248 ORTHO05D004978 1.0e-21 109.4 100 56.0
Nitab4.5_0000020g0030 Nicotiana tabacum HOM05D004248 ORTHO05D004978 4.9e-19 100.5 166 41.6
SEGI_27247 Sequoiadendron giganteum HOM05D004248 ORTHO05D004978 4.1e-18 97.4 100 50.0
MCO15G695 Micromonas commoda HOM05D004248 ORTHO05D004978 2.5e-15 88.2 205 34.1
PRCOL_00003825 Prasinoderma coloniale HOM05D004248 ORTHO05D004978 6.1e-14 83.6 181 31.5
HanXRQChr06g0164401 Helianthus annuus HOM05D004248 ORTHO05D004978 8.9e-13 79.7 161 36.0
Lj1A1051T46 Lonicera japonica HOM05D004248 ORTHO05D004978 7.5e-12 76.6 78 51.3
HanXRQChr06g0164411 Helianthus annuus HOM05D004248 ORTHO05D004978 3.7e-11 74.3 81 46.9
THA.LOC104824536 Tarenaya hassleriana HOM05D004248 ORTHO05D004978 4.9e-11 73.9 171 33.9
Nitab4.5_0002858g0090 Nicotiana tabacum HOM05D004248 ORTHO05D004978 7.0e-10 70.1 78 42.3
BolC5t32083H Brassica oleracea HOM05D004248 ORTHO05D004978 1.9e-07 62.0 147 30.6
PSO478G2592 Papaver somniferum HOM05D004248 ORTHO05D004978 5.6e-07 60.5 87 37.9
TPR.G597 Trifolium pratense HOM05D004248 ORTHO05D004978 1.6e-06 58.9 44 61.4
Cfa026921 Carpinus fangiana HOM05D004248 ORTHO05D004978 3.6e-06 57.8 194 30.4


User provided reference genes

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