Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 3.5e-208 728.0 364 100.0
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 1.1e-145 520.4 361 68.1
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 9.5e-145 517.3 361 68.4
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 2.8e-144 515.8 361 68.4
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.9e-137 493.0 367 64.0
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 4.3e-137 491.9 367 63.8
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 8.3e-133 477.6 362 62.7
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.9e-130 468.8 362 62.2
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 5.1e-130 468.4 362 62.2
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 1.9e-129 466.5 362 61.9
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 7.3e-129 464.5 358 63.4
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.2e-128 463.8 362 62.7
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 2.1e-128 463.0 364 61.5
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 6.2e-128 461.5 366 61.2
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 1.1e-127 460.7 365 62.2
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.1e-127 460.7 367 62.4
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.0e-127 458.8 367 60.5
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 4.0e-127 458.8 358 62.6
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 6.8e-127 458.0 362 62.4
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 8.9e-127 457.6 362 61.6
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.5e-126 456.8 359 61.3
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 2.6e-126 456.1 363 60.1
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 4.4e-126 455.3 364 60.4
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 4.4e-126 455.3 363 60.6
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 4.4e-126 455.3 367 60.2
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 5.8e-126 454.9 362 61.3
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.8e-126 454.9 367 59.9
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 7.5e-126 454.5 363 61.4
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 7.5e-126 454.5 360 61.1
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 1.7e-125 453.4 367 59.9
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 2.9e-125 452.6 363 59.5
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 2.9e-125 452.6 363 59.0
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 3.7e-125 452.2 364 61.3
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 3.7e-125 452.2 361 59.8
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 4.9e-125 451.8 367 60.2
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 8.3e-125 451.1 362 61.0
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 8.3e-125 451.1 363 60.3
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.4e-124 450.3 362 61.0
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.4e-124 450.3 362 61.0
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 1.4e-124 450.3 364 59.9
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 1.4e-124 450.3 362 60.2
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.9e-124 449.9 360 60.6
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 1.9e-124 449.9 363 59.5
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 3.2e-124 449.1 367 58.6
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 3.2e-124 449.1 359 61.8
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 5.4e-124 448.4 364 58.2
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 7.1e-124 448.0 367 59.9
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 1.6e-123 446.8 364 58.0
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 1.6e-123 446.8 362 58.6
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 2.1e-123 446.4 388 58.5
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 4.6e-123 445.3 362 60.5
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 4.6e-123 445.3 361 59.0
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 6.0e-123 444.9 360 60.8
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 7.8e-123 444.5 363 57.9
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.7e-122 443.4 363 57.6
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 1.7e-122 443.4 363 58.7
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.9e-122 442.2 363 57.9
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 6.6e-122 441.4 363 57.6
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 8.6e-122 441.0 363 57.6
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 1.5e-121 440.3 363 59.2
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 2.5e-121 439.5 368 58.7
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 2.5e-121 439.5 357 59.7
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 3.3e-121 439.1 368 58.2
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 9.5e-121 437.6 366 62.3
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 9.5e-121 437.6 360 59.7
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.2e-120 437.2 368 58.7
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 3.6e-120 435.6 361 58.7
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 3.6e-120 435.6 363 58.7
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.6e-120 435.6 357 60.2
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 4.7e-120 435.3 383 56.9
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 6.2e-120 434.9 364 57.4
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 6.2e-120 434.9 353 61.2
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 8.1e-120 434.5 361 59.8
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 8.1e-120 434.5 367 58.6
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 1.1e-119 434.1 361 58.7
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 1.4e-119 433.7 368 57.6
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.4e-119 433.7 368 57.9
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.4e-119 433.7 397 55.9
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 4.0e-119 432.2 361 57.9
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.2e-118 430.6 366 56.8
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 3.4e-118 429.1 369 57.5
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 3.4e-118 429.1 369 57.5
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 3.4e-118 429.1 369 57.5
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 5.8e-118 428.3 361 56.0
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 7.6e-118 427.9 360 56.9
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 7.6e-118 427.9 364 57.4
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 9.9e-118 427.6 368 57.1
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.3e-117 427.2 376 55.9
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 1.7e-117 426.8 368 57.1
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 2.2e-117 426.4 366 56.8
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.2e-117 426.4 359 57.4
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 2.9e-117 426.0 363 56.7
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 3.8e-117 425.6 368 57.1
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 3.8e-117 425.6 368 57.3
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 3.8e-117 425.6 368 57.3
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 4.9e-117 425.2 368 59.2
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 6.4e-117 424.9 357 57.7
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 1.3e-114 417.2 371 55.5
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 5.1e-114 415.2 364 54.7
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 2.4e-111 406.4 369 55.3
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 2.4e-111 406.4 369 55.3
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 3.1e-111 406.0 369 53.9
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 3.4e-110 402.5 365 55.9
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 4.4e-110 402.1 360 55.8
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 1.4e-108 397.1 430 49.1
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 4.2e-108 395.6 362 54.4
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 5.4e-108 395.2 328 60.1
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 5.1e-106 388.7 356 54.5
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 9.0e-103 377.9 361 52.1
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.9e-98 362.5 361 50.4
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 3.9e-98 362.5 276 62.0
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 6.7e-98 361.7 363 51.0
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 6.7e-98 361.7 359 51.0
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 7.4e-97 358.2 355 51.0
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 2.8e-96 356.3 277 60.3
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 8.1e-96 354.8 360 48.3
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 4.0e-95 352.4 291 60.5
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 5.8e-94 348.6 244 66.4
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 7.6e-94 348.2 250 65.2
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 4.6e-91 339.0 261 60.2
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 1.9e-89 333.6 356 50.3
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 1.3e-88 330.9 595 35.6
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 2.4e-87 326.6 240 65.8
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 1.5e-86 323.9 240 62.1
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 2.9e-85 319.7 241 62.2
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 1.9e-84 317.0 241 61.0
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 5.5e-84 315.5 243 62.1
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 7.1e-84 315.1 242 60.3
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 9.3e-84 314.7 363 47.4
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.5e-83 312.8 363 46.6
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.1e-81 307.8 226 63.7
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.4e-79 300.8 388 43.0
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 7.7e-70 268.5 189 66.1
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 5.5e-68 262.3 242 55.4
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 2.9e-61 240.0 354 38.7
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 5.5e-60 235.7 155 72.3
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 1.6e-46 191.0 261 45.6
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.1e-39 166.8 205 42.0
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 5.4e-39 166.0 122 64.8
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 3.8e-37 159.8 111 66.7
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.1e-36 158.3 205 42.4
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 1.6e-35 154.5 402 34.1
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 8.6e-29 132.1 360 28.1
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 2.5e-28 130.6 102 56.9
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 8.0e-27 125.6 258 32.6
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 4.0e-26 123.2 175 42.9
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 1.7e-24 117.9 125 49.6
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 4.9e-24 116.3 154 45.5
BcaC06g35234 Brassica carinata HOM05D004508 ORTHO05D005180 4.3e-20 103.2 70 64.3
BolC6t40022H Brassica oleracea HOM05D004508 ORTHO05D005180 4.7e-19 99.8 99 50.5
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 1.3e-16 91.7 93 53.8
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 1.9e-15 87.8 93 51.6
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 2.1e-14 84.3 93 50.5
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 3.5e-14 83.6 286 25.5
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.9e-12 77.8 67 56.7
BolC3t15893H Brassica oleracea HOM05D004508 ORTHO05D005180 4.1e-07 60.1 43 48.8
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.6e-06 58.2 52 55.8
CDE04G3100 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 1.6e-06 58.2 60 46.7


User provided reference genes

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