Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3710 Utricularia gibba HOM05D003866 ORTHO05D004508 1.8e-125 452.6 230 100.0
SalBow2G1869 Salvia bowleyana HOM05D003866 ORTHO05D004508 3.4e-100 368.6 230 77.8
MSTRG.18171 Avicennia marina HOM05D003866 ORTHO05D004508 1.7e-99 366.3 230 78.7
SGA_v2.0_scaffold1G00383 Striga asiatica HOM05D003866 ORTHO05D004508 5.5e-98 361.3 230 77.4
Cc01_g20600 Coffea canephora HOM05D003866 ORTHO05D004508 2.6e-95 352.4 230 75.2
Migut.I00105 Erythranthe guttata HOM05D003866 ORTHO05D004508 4.4e-95 351.7 224 76.8
Cc01_g06400 Coffea canephora HOM05D003866 ORTHO05D004508 7.4e-95 350.9 230 75.7
Oeu024509.1 Olea europaea HOM05D003866 ORTHO05D004508 7.4e-95 350.9 230 74.3
PGSC0003DMG400027790 Solanum tuberosum HOM05D003866 ORTHO05D004508 1.7e-94 349.7 226 75.2
Eucgr.K03458 Eucalyptus grandis HOM05D003866 ORTHO05D004508 1.1e-93 347.1 226 74.8
Atru.chr5.1203 Acer truncatum HOM05D003866 ORTHO05D004508 1.8e-93 346.3 230 73.5
Sopen11g008460 Solanum pennellii HOM05D003866 ORTHO05D004508 1.8e-93 346.3 224 75.4
Dinv19723 Davidia involucrata HOM05D003866 ORTHO05D004508 2.4e-93 345.9 230 74.3
Dinv33030 Davidia involucrata HOM05D003866 ORTHO05D004508 2.4e-93 345.9 229 73.8
ECA236G1731 Erigeron canadensis HOM05D003866 ORTHO05D004508 5.3e-93 344.7 223 73.5
Nitab4.5_0004737g0020 Nicotiana tabacum HOM05D003866 ORTHO05D004508 9.1e-93 344.0 224 74.6
PGSC0003DMG400027789 Solanum tuberosum HOM05D003866 ORTHO05D004508 9.1e-93 344.0 224 74.1
Ciclev10022066m.g Citrus clementina HOM05D003866 ORTHO05D004508 1.5e-92 343.2 228 72.4
Solyc11g013460.2 Solanum lycopersicum HOM05D003866 ORTHO05D004508 1.5e-92 343.2 224 74.6
CANSAT25G2840 Cannabis sativa HOM05D003866 ORTHO05D004508 3.5e-92 342.0 229 72.1
CAN.G337.118 Capsicum annuum HOM05D003866 ORTHO05D004508 3.5e-92 342.0 226 73.0
Lj2A1190T61 Lonicera japonica HOM05D003866 ORTHO05D004508 5.9e-92 341.3 228 73.2
CSS0038127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 1.0e-91 340.5 230 71.7
CANSAT25G0267 Cannabis sativa HOM05D003866 ORTHO05D004508 1.7e-91 339.7 229 71.6
MD03G1282400 Malus domestica HOM05D003866 ORTHO05D004508 1.7e-91 339.7 230 70.9
Peaxi162Scf00140g01011 Petunia axillaris HOM05D003866 ORTHO05D004508 3.8e-91 338.6 223 73.1
RcHm_v2.0_Chr6g0293371 Rosa chinensis HOM05D003866 ORTHO05D004508 5.0e-91 338.2 228 73.2
HanXRQChr04g0118161 Helianthus annuus HOM05D003866 ORTHO05D004508 6.5e-91 337.8 223 74.0
RcHm_v2.0_Chr5g0006471 Rosa chinensis HOM05D003866 ORTHO05D004508 8.5e-91 337.4 228 72.8
Lsat_1_v5_gn_8_54720 Lactuca sativa HOM05D003866 ORTHO05D004508 1.1e-90 337.0 223 72.2
Nitab4.5_0000051g0210 Nicotiana tabacum HOM05D003866 ORTHO05D004508 1.1e-90 337.0 224 73.7
Rhsim13G0013000 Rhododendron simsii HOM05D003866 ORTHO05D004508 4.2e-90 335.1 230 70.9
TWI14G1088 Tripterygium wilfordii HOM05D003866 ORTHO05D004508 5.5e-90 334.7 225 72.9
HanXRQChr06g0163901 Helianthus annuus HOM05D003866 ORTHO05D004508 7.2e-90 334.3 223 70.9
CSS0036127 Camellia sinensis var. sinensis HOM05D003866 ORTHO05D004508 9.4e-90 334.0 230 71.3
vmacro02471 Vaccinium macrocarpon HOM05D003866 ORTHO05D004508 9.4e-90 334.0 230 71.3
GSVIVG01027965001 Vitis vinifera HOM05D003866 ORTHO05D004508 1.6e-89 333.2 226 71.7
FAN15G0670 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.1e-89 332.8 228 71.9
Lj1A33G82 Lonicera japonica HOM05D003866 ORTHO05D004508 2.7e-89 332.4 225 71.6
Haze_04883 Corylus avellana HOM05D003866 ORTHO05D004508 3.6e-89 332.0 228 70.2
RhsimUnG0168700 Rhododendron simsii HOM05D003866 ORTHO05D004508 3.6e-89 332.0 230 70.9
CiPaw.08G097800 Carya illinoinensis HOM05D003866 ORTHO05D004508 4.7e-89 331.6 228 70.6
Prupe.8G257100 Prunus persica HOM05D003866 ORTHO05D004508 1.4e-88 330.1 228 70.2
PGR031G3621 Punica granatum HOM05D003866 ORTHO05D004508 1.8e-88 329.7 259 64.5
Actinidia24328 Actinidia chinensis HOM05D003866 ORTHO05D004508 3.0e-88 328.9 230 70.0
MD11G1303900 Malus domestica HOM05D003866 ORTHO05D004508 3.0e-88 328.9 229 69.9
Cpa.g.sc11.50 Carica papaya HOM05D003866 ORTHO05D004508 6.7e-88 327.8 228 70.6
FvH4_2g25231 Fragaria vesca HOM05D003866 ORTHO05D004508 8.8e-88 327.4 228 70.6
CsaV3_4G000530 Cucumis sativus L. HOM05D003866 ORTHO05D004508 1.5e-87 326.6 226 70.8
Nn4g25882 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.0e-87 326.2 229 67.7
Lalb_Chr04g0259781 Lupinus albus HOM05D003866 ORTHO05D004508 2.6e-87 325.9 224 69.6
Aqoxy5G00709 Aquilegia oxysepala HOM05D003866 ORTHO05D004508 3.3e-87 325.5 228 70.2
AUR62031891 Chenopodium quinoa HOM05D003866 ORTHO05D004508 3.3e-87 325.5 228 69.3
MBI19_g41921_MAGBIO Magnolia biondii HOM05D003866 ORTHO05D004508 3.3e-87 325.5 228 68.4
Cfa005958 Carpinus fangiana HOM05D003866 ORTHO05D004508 5.7e-87 324.7 228 69.7
FAN11G1587 Fragaria x ananassa HOM05D003866 ORTHO05D004508 7.4e-87 324.3 228 71.1
Potri.010G206900 Populus trichocarpa HOM05D003866 ORTHO05D004508 7.4e-87 324.3 224 70.1
FvH4_3g05411 Fragaria vesca HOM05D003866 ORTHO05D004508 9.7e-87 323.9 228 70.2
TAR636G2430 Trochodendron aralioides HOM05D003866 ORTHO05D004508 9.7e-87 323.9 228 68.4
RcHm_v2.0_Chr7g0221651 Rosa chinensis HOM05D003866 ORTHO05D004508 1.3e-86 323.6 228 69.3
DCAR_024209 Daucus carota HOM05D003866 ORTHO05D004508 2.2e-86 322.8 230 68.7
Duzib133G0502 Durio zibethinus HOM05D003866 ORTHO05D004508 2.2e-86 322.8 223 69.5
TAR365G0487 Trochodendron aralioides HOM05D003866 ORTHO05D004508 3.7e-86 322.0 228 69.3
AUR62022186 Chenopodium quinoa HOM05D003866 ORTHO05D004508 4.8e-86 321.6 228 68.9
Sed0016300 Sechium edule HOM05D003866 ORTHO05D004508 6.3e-86 321.2 226 69.9
arahy.Tifrunner.gnm1.ann1.44W6WI Arachis hypogaea HOM05D003866 ORTHO05D004508 1.4e-85 320.1 224 69.2
FvH4_7g06070 Fragaria vesca HOM05D003866 ORTHO05D004508 1.4e-85 320.1 228 69.7
Gohir.A12G010200 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.4e-85 320.1 223 68.2
Lj1C0G2 Lonicera japonica HOM05D003866 ORTHO05D004508 1.4e-85 320.1 208 75.0
COL.COLO4_23391 Corchorus olitorius HOM05D003866 ORTHO05D004508 1.8e-85 319.7 228 68.9
Hund18125 Selenicereus undatus HOM05D003866 ORTHO05D004508 1.8e-85 319.7 224 69.6
FAN27G2002 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.4e-85 319.3 228 70.2
Phvul.001G205200 Phaseolus vulgaris HOM05D003866 ORTHO05D004508 2.4e-85 319.3 225 68.4
Ca_09142_v3 Cicer arietinum L. HOM05D003866 ORTHO05D004508 5.3e-85 318.2 224 68.3
Gohir.D12G010300 Gossypium hirsutum HOM05D003866 ORTHO05D004508 9.1e-85 317.4 223 67.3
EL10Ac4g07959 Beta vulgaris HOM05D003866 ORTHO05D004508 1.6e-84 316.6 228 67.1
Glyma.03G212300 Glycine max HOM05D003866 ORTHO05D004508 1.6e-84 316.6 225 67.6
Gorai.008G010300 Gossypium raimondii HOM05D003866 ORTHO05D004508 1.6e-84 316.6 223 68.2
TAR365G0990 Trochodendron aralioides HOM05D003866 ORTHO05D004508 1.6e-84 316.6 218 70.6
ATR0706G042 Amborella trichopoda HOM05D003866 ORTHO05D004508 2.6e-84 315.8 228 67.1
AT2G27490 Arabidopsis thaliana HOM05D003866 ORTHO05D004508 2.6e-84 315.8 224 67.0
AL4G21480 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 3.5e-84 315.5 224 66.5
Gorai.012G004500 Gossypium raimondii HOM05D003866 ORTHO05D004508 3.5e-84 315.5 223 67.3
Aa31LG5G8830 Aethionema arabicum HOM05D003866 ORTHO05D004508 5.9e-84 314.7 224 67.4
Manes.13G006100 Manihot esculenta HOM05D003866 ORTHO05D004508 5.9e-84 314.7 228 65.4
Lj1g0017340 Lotus japonicus HOM05D003866 ORTHO05D004508 7.7e-84 314.3 224 67.4
Glyma.19G209400 Glycine max HOM05D003866 ORTHO05D004508 1.0e-83 313.9 225 68.0
Gohir.D04G003400 Gossypium hirsutum HOM05D003866 ORTHO05D004508 1.0e-83 313.9 223 67.3
Manes.12G006300 Manihot esculenta HOM05D003866 ORTHO05D004508 1.0e-83 313.9 228 67.5
VMungo1383G2803 Vigna mungo HOM05D003866 ORTHO05D004508 2.9e-83 312.4 226 67.7
BolC3t15527H Brassica oleracea HOM05D003866 ORTHO05D004508 1.1e-82 310.5 219 68.0
Sabra08G0038800 Salix brachista HOM05D003866 ORTHO05D004508 1.1e-82 310.5 229 68.1
BcaC01g04944 Brassica carinata HOM05D003866 ORTHO05D004508 1.5e-82 310.1 219 68.0
C03p31840 Brassica napus HOM05D003866 ORTHO05D004508 1.9e-82 309.7 219 67.6
FAN24G3471 Fragaria x ananassa HOM05D003866 ORTHO05D004508 1.9e-82 309.7 202 74.3
BcaB01g03075 Brassica carinata HOM05D003866 ORTHO05D004508 2.5e-82 309.3 228 63.6
A03p26580 Brassica napus HOM05D003866 ORTHO05D004508 2.5e-82 309.3 219 68.0
BraA03t11870Z Brassica rapa HOM05D003866 ORTHO05D004508 2.5e-82 309.3 219 68.0
CARHR120140 Cardamine hirsuta HOM05D003866 ORTHO05D004508 4.2e-82 308.5 224 65.2
Medtr2g014120 Medicago truncatula HOM05D003866 ORTHO05D004508 4.2e-82 308.5 224 66.5
Medtr7g108540 Medicago truncatula HOM05D003866 ORTHO05D004508 4.2e-82 308.5 224 66.5
PSO210G0692 Papaver somniferum HOM05D003866 ORTHO05D004508 4.2e-82 308.5 227 69.2
PSO832G2724 Papaver somniferum HOM05D003866 ORTHO05D004508 5.5e-82 308.1 227 68.7
arahy.Tifrunner.gnm1.ann1.AT77GA Arachis hypogaea HOM05D003866 ORTHO05D004508 7.2e-82 307.8 224 67.4
TPR.G9596 Trifolium pratense HOM05D003866 ORTHO05D004508 1.2e-81 307.0 224 66.1
Sp4g10360 Schrenkiella parvula HOM05D003866 ORTHO05D004508 1.6e-81 306.6 219 66.2
Thhalv10017203m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 3.6e-81 305.4 224 64.7
Os01g0360600 Oryza sativa ssp. japonica HOM05D003866 ORTHO05D004508 8.0e-81 304.3 223 63.2
Prupe.6G179600 Prunus persica HOM05D003866 ORTHO05D004508 8.0e-81 304.3 225 64.0
A07p18280 Brassica napus HOM05D003866 ORTHO05D004508 2.3e-80 302.8 219 65.3
Psat3g022720 Pisum sativum HOM05D003866 ORTHO05D004508 3.0e-80 302.4 224 66.1
Carub.0004s0812 Capsella rubella HOM05D003866 ORTHO05D004508 1.5e-79 300.1 204 68.6
Thhalv10017190m.g Eutrema salsugineum HOM05D003866 ORTHO05D004508 2.0e-79 299.7 215 65.1
ClCG10G010790 Citrullus lanatus HOM05D003866 ORTHO05D004508 6.3e-78 294.7 310 51.9
CDE09G0414 Ceratophyllum demersum HOM05D003866 ORTHO05D004508 7.0e-77 291.2 219 65.3
Zm00001eb041190 Zea mays HOM05D003866 ORTHO05D004508 9.1e-77 290.8 228 62.7
Sp4g10280 Schrenkiella parvula HOM05D003866 ORTHO05D004508 5.9e-76 288.1 224 62.1
Thecc.01G295900 Theobroma cacao HOM05D003866 ORTHO05D004508 2.2e-75 286.2 210 64.3
FAN10G2101 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.5e-74 282.7 228 63.6
Sc03g0003200 Simmondsia chinensis HOM05D006805 ORTHO05D004508 4.2e-74 282.0 192 72.4
arahy.Tifrunner.gnm1.ann1.9DBC1D Arachis hypogaea HOM05D003866 ORTHO05D004508 1.6e-73 280.0 207 69.6
RcHm_v2.0_Chr1g0333581 Rosa chinensis HOM05D003866 ORTHO05D004508 1.0e-72 277.3 231 62.8
BcaB02g10095 Brassica carinata HOM05D003866 ORTHO05D004508 3.0e-72 275.8 221 62.0
Gohir.A05G412600 Gossypium hirsutum HOM05D003866 ORTHO05D004508 3.4e-71 272.3 198 65.7
Sabra10G0159700 Salix brachista HOM05D003866 ORTHO05D002218 4.4e-71 271.9 193 67.9
SGA_v2.0_scaffold25G10945 Striga asiatica HOM05D003866 ORTHO05D004508 2.2e-70 269.6 203 69.0
SEGI_05441 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 9.1e-69 264.2 225 60.0
Hund18126 Selenicereus undatus HOM05D003866 ORTHO05D004508 7.7e-68 261.2 192 64.6
Actinidia32233 Actinidia chinensis HOM05D003866 ORTHO05D004508 1.5e-66 256.9 180 70.0
AL8G17300 Arabidopsis lyrata HOM05D003866 ORTHO05D004508 1.1e-61 240.7 234 55.1
RcHm_v2.0_Chr1g0334201 Rosa chinensis HOM05D003866 ORTHO05D004508 2.4e-61 239.6 147 77.6
Pp3c2_13260 Physcomitrium patens HOM05D003866 ORTHO05D004508 2.9e-59 232.6 210 53.8
AagrBONN_evm.TU.Sc2ySwM_228.2237 Anthoceros agrestis HOM05D003866 ORTHO05D004508 1.2e-57 227.3 204 57.4
Mapoly0028s0053 Marchantia polymorpha HOM05D003866 ORTHO05D004508 4.7e-57 225.3 212 54.7
SMO144G0118 Selaginella moellendorffii HOM05D003866 ORTHO05D004508 1.4e-56 223.8 218 53.2
FAN25G0878 Fragaria x ananassa HOM05D003866 ORTHO05D004508 8.9e-56 221.1 144 75.0
Nn4g25856 Nelumbo nucifera HOM05D003866 ORTHO05D004508 2.0e-55 219.9 154 68.8
Potri.008G053601 Populus trichocarpa HOM05D003866 ORTHO05D004508 1.1e-53 214.2 133 76.7
FAN20G0831 Fragaria x ananassa HOM05D003866 ORTHO05D004508 2.8e-49 199.5 124 77.4
MD12G1063200 Malus domestica HOM05D003866 ORTHO05D004508 4.9e-46 188.7 144 62.5
EL10Ac1g00209 Beta vulgaris HOM05D003866 ORTHO05D004508 4.6e-44 182.2 171 55.6
Cre10.g436150 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 3.9e-43 179.1 197 45.7
SHI02446 Sapria himalayana HOM05D003866 ORTHO05D004508 7.3e-42 174.9 134 67.2
Carub.0001s3498 Capsella rubella HOM05D003866 ORTHO05D004508 9.5e-42 174.5 133 60.2
RcHm_v2.0_Chr1g0333491 Rosa chinensis HOM05D003866 ORTHO05D004508 1.8e-40 170.2 119 67.2
BcaC02g10889 Brassica carinata HOM05D003866 ORTHO05D004508 4.0e-40 169.1 133 58.6
Sc03g0003210 Simmondsia chinensis HOM05D003866 ORTHO05D004508 4.0e-40 169.1 143 63.6
Zm00001eb341290 Zea mays HOM05D003866 ORTHO05D004508 2.2e-38 163.3 141 56.0
arahy.Tifrunner.gnm1.ann1.ZE4P1V Arachis hypogaea HOM05D003866 ORTHO05D004508 1.6e-36 157.1 146 55.5
CBR_g9110 Chara braunii HOM05D003958 ORTHO05D004864 3.9e-35 152.5 183 44.8
Oeu047454.1 Olea europaea HOM05D003866 ORTHO05D004508 3.6e-33 146.0 98 74.5
BolC4t23901H Brassica oleracea HOM05D003866 ORTHO05D004508 1.4e-32 144.1 119 62.2
RcHm_v2.0_Chr4g0419041 Rosa chinensis HOM05D003866 ORTHO05D004508 2.4e-32 143.3 126 57.9
HPP92_010697 Vanilla planifolia HOM05D001483 ORTHO05D001463 4.0e-32 142.5 191 42.9
MSTRG.21619 Avicennia marina HOM05D003866 ORTHO05D004508 1.3e-30 137.5 85 77.6
QL12p026964 Quercus lobata HOM05D003866 ORTHO05D004508 2.2e-30 136.7 85 75.3
BraA07t29544Z Brassica rapa HOM05D003866 ORTHO05D004508 6.4e-30 135.2 112 62.5
GSVIVG01010954001 Vitis vinifera HOM05D003866 ORTHO05D004508 8.4e-30 134.8 88 75.0
arahy.Tifrunner.gnm1.ann1.86SF76 Arachis hypogaea HOM05D003866 ORTHO05D004508 1.9e-29 133.7 128 53.1
Psat5g098240 Pisum sativum HOM05D001063 ORTHO05D000986 1.2e-28 131.0 119 57.1
BcaC02g10888 Brassica carinata HOM05D003866 ORTHO05D004508 6.0e-28 128.6 82 73.2
CAN.G174.11 Capsicum annuum HOM05D003866 ORTHO05D004508 3.9e-27 125.9 85 70.6
C04p24060 Brassica napus HOM05D003866 ORTHO05D004508 1.5e-26 124.0 95 64.2
ClCG10G010800 Citrullus lanatus HOM05D003866 ORTHO05D004508 1.3e-25 120.9 85 69.4
CAN.G255.7 Capsicum annuum HOM05D003866 ORTHO05D004508 6.2e-25 118.6 105 60.0
arahy.Tifrunner.gnm1.ann1.VNWS1A Arachis hypogaea HOM05D003866 ORTHO05D004508 1.8e-24 117.1 103 55.3
CAN.G255.6 Capsicum annuum HOM05D003866 ORTHO05D004508 3.1e-24 116.3 76 73.7
QL12p026975 Quercus lobata HOM05D003866 ORTHO05D004508 9.9e-23 111.3 69 75.4
RcHm_v2.0_Chr6g0258301 Rosa chinensis HOM05D003866 ORTHO05D004508 2.9e-22 109.8 145 42.8
FvH4_3g05410 Fragaria vesca HOM05D003866 ORTHO05D004508 3.8e-22 109.4 71 70.4
FAN06G0461 Fragaria x ananassa HOM05D003866 ORTHO05D004508 6.4e-22 108.6 85 62.4
SEGI_13628 Sequoiadendron giganteum HOM05D003866 ORTHO05D004508 6.4e-22 108.6 85 64.7
DCAR_024210 Daucus carota HOM05D003866 ORTHO05D004508 6.6e-19 98.6 61 73.8
PRCOL_00003268 Prasinoderma coloniale HOM05D003001 ORTHO05D003494 1.3e-17 94.4 192 32.3
arahy.Tifrunner.gnm1.ann1.TVUZ4W Arachis hypogaea HOM05D003866 ORTHO05D004508 1.1e-16 91.3 77 61.0
MD14G1128400 Malus domestica HOM05D003866 ORTHO05D004508 5.8e-15 85.5 51 78.4
MCO11G607 Micromonas commoda HOM05D003866 ORTHO05D004508 5.8e-15 85.5 185 33.0
Cre13.g586250 Chlamydomonas reinhardtii HOM05D003866 ORTHO05D004508 1.3e-14 84.3 187 32.1
RcHm_v2.0_Chr4g0419031 Rosa chinensis HOM05D003866 ORTHO05D004508 4.9e-14 82.4 85 52.9
ClCG10G010610 Citrullus lanatus HOM05D003866 ORTHO05D004508 9.3e-13 78.2 70 55.7
RcHm_v2.0_Chr1g0333451 Rosa chinensis HOM05D003866 ORTHO05D004508 2.1e-12 77.0 60 65.0
HanXRQChr04g0118191 Helianthus annuus HOM05D003866 ORTHO05D004508 1.9e-10 70.5 67 55.2
SHI02445 Sapria himalayana HOM05D003866 ORTHO05D004508 6.9e-08 62.0 49 57.1


User provided reference genes

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