Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 0.0e+00 1729.1 923 100.0
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1241.5 1103 65.9
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1223.4 1072 65.6
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1166.0 1148 61.3
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1129.0 1100 60.5
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1127.1 1068 59.7
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1124.4 1095 58.3
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1124.0 1054 61.4
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1116.7 1093 57.8
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 0.0e+00 1113.6 1122 60.3
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1109.7 1066 58.8
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1108.6 1093 60.5
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1106.7 1029 61.3
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1105.1 1111 56.7
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1103.6 1054 59.7
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1098.6 1085 59.3
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1097.0 1072 59.7
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1096.3 1075 60.9
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1095.9 1091 57.6
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1094.7 994 61.1
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1093.2 1075 58.3
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1093.2 1075 58.3
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1088.9 1052 59.3
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1088.9 1069 57.9
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1088.2 1094 59.9
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1087.8 964 61.5
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1087.0 1052 58.7
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1085.9 1053 59.0
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1085.9 966 61.0
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1085.1 1083 58.2
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1079.7 1072 59.0
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1075.1 1048 57.3
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 6.3e-312 1073.9 1053 59.2
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 4.4e-311 1071.2 1035 59.0
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 2.1e-310 1068.9 1063 57.9
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 1.1e-309 1066.6 1081 56.8
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 1.8e-309 1065.8 1072 59.2
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 1.8e-309 1065.8 1075 58.0
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 3.1e-309 1065.1 1065 57.6
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 3.4e-308 1061.6 1053 58.2
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 4.5e-308 1061.2 1053 59.0
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 1.3e-307 1059.7 1073 59.5
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 4.2e-306 1054.7 1082 56.7
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 5.5e-306 1054.3 1085 56.6
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 1.2e-305 1053.1 931 60.9
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 2.7e-305 1052.0 1084 56.2
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 4.6e-305 1051.2 1071 57.3
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 6.0e-305 1050.8 1052 59.1
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 8.7e-304 1047.0 1121 54.8
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 4.3e-303 1044.6 1092 56.1
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 3.7e-302 1041.6 1091 56.4
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.4e-301 1039.6 934 60.7
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 1.4e-301 1039.6 1048 59.0
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 1.4e-301 1039.6 1071 57.1
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 2.4e-301 1038.9 1042 56.9
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 3.1e-301 1038.5 1044 58.1
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 4.5e-300 1034.6 1039 58.1
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 1.4e-298 1029.6 1079 58.4
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 1.9e-298 1029.2 1086 55.2
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 9.3e-298 1026.9 1096 56.5
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 1.6e-297 1026.2 868 62.8
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 2.1e-297 1025.8 869 62.5
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 2.1e-297 1025.8 869 62.6
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 2.7e-297 1025.4 1048 57.3
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 7.9e-297 1023.8 869 62.5
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 6.7e-296 1020.8 1095 57.4
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 1.6e-294 1016.1 1099 55.3
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 2.2e-294 1015.8 933 58.6
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 3.7e-294 1015.0 1028 56.8
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 1.5e-292 1009.6 930 57.3
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 2.0e-292 1009.2 1055 55.7
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 2.9e-291 1005.4 1084 54.7
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 1.2e-289 1000.0 930 56.9
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 2.7e-289 998.8 930 57.4
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 6.1e-289 997.7 930 57.2
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 6.1e-289 997.7 1230 49.2
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.8e-288 996.1 928 58.9
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 1.8e-288 996.1 1088 55.6
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 3.9e-288 995.0 1101 54.2
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 6.7e-288 994.2 1138 55.6
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 6.3e-286 987.6 963 56.2
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 5.9e-284 981.1 1121 53.3
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 1.0e-283 980.3 931 56.5
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 1.0e-283 980.3 931 56.5
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.3e-283 979.9 1048 55.5
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 2.2e-283 979.2 931 56.4
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 2.2e-283 979.2 931 56.4
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 1.2e-281 973.4 1052 53.2
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 1.4e-277 959.9 1034 54.0
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 1.4e-277 959.9 927 55.8
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 1.8e-277 959.5 869 59.5
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 2.4e-277 959.1 1048 56.2
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 1.9e-274 949.5 1198 50.1
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 6.7e-272 941.0 1121 52.0
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 2.0e-268 929.5 1167 49.5
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 2.9e-267 925.6 896 57.1
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 4.5e-260 901.7 879 54.7
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 2.2e-259 899.4 925 54.8
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 5.5e-258 894.8 924 52.2
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 2.0e-255 886.3 1062 48.7
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 1.7e-254 883.2 904 52.3
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 2.3e-251 872.8 1103 52.0
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 8.1e-209 731.5 692 58.1
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 6.9e-208 728.4 690 58.0
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 9.6e-194 681.4 735 49.5
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 4.8e-185 652.5 666 55.4
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 3.2e-173 613.2 612 54.2
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 4.6e-172 609.4 470 67.0
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 2.6e-162 577.0 620 52.3
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 1.7e-153 547.7 530 63.4
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 5.0e-118 429.9 417 67.1
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.1e-116 424.5 561 45.1
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 3.0e-110 404.1 411 62.5
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 1.6e-108 398.3 380 55.8
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.9e-107 392.5 401 54.9
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 2.7e-103 380.9 318 61.6
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 1.8e-83 315.1 330 49.7
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 9.7e-61 239.6 246 52.8
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 2.6e-58 231.5 1054 24.6
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 1.3e-57 229.2 1028 24.2
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 7.9e-55 219.9 324 42.9
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 1.1e-45 189.5 165 60.6
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 4.1e-43 181.0 99 85.9
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 5.5e-40 170.6 248 44.8
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 1.6e-39 169.1 217 46.1
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.7e-36 159.1 149 55.7
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.0e-33 149.8 108 66.7
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.7e-33 149.1 103 65.0
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 4.7e-31 141.0 226 38.5
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 1.0e-30 139.8 155 49.7
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.4e-30 139.4 372 30.9
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.8e-30 139.0 74 90.5
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 2.3e-30 138.7 103 67.0
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 6.8e-30 137.1 331 30.8
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.2e-29 136.3 155 48.4
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 3.7e-28 131.3 155 49.0
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 1.0e-25 123.2 196 38.8
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 2.9e-25 121.7 70 85.7
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.3e-24 118.2 377 28.6
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 5.5e-24 117.5 89 68.5
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.9e-22 110.2 116 49.1
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.9e-20 104.4 113 55.8
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.1e-19 101.7 59 79.7
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 1.2e-18 99.8 151 42.4
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 4.5e-18 97.8 77 62.3
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 7.8e-18 97.1 70 75.7
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 2.3e-17 95.5 213 30.0
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 2.9e-17 95.1 77 61.0
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.6e-17 94.0 80 60.0
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 4.3e-16 91.3 82 53.7
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.6e-15 88.2 79 55.7
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 6.1e-15 87.4 47 91.5
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 3.1e-14 85.1 276 31.5
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.9e-14 83.6 102 49.0
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 3.4e-13 81.6 49 75.5
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.5e-10 71.6 85 51.8
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 4.6e-10 71.2 63 55.6
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.3e-08 64.7 104 40.4
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.3e-08 64.7 104 40.4
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 4.3e-08 64.7 104 40.4
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.3e-08 63.9 58 51.7
BolC7t41346H Brassica oleracea HOM05D003881 ORTHO05D004343 2.8e-07 62.0 90 38.9
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 8.0e-07 60.5 66 48.5
Hund09398 Selenicereus undatus HOM05D003469 ORTHO05D004084 1.8e-06 59.3 319 21.9
C07p09280 Brassica napus HOM05D003881 ORTHO05D004343 6.8e-06 57.4 90 36.7
Lsat_1_v5_gn_4_19980 Lactuca sativa HOM05D003550 ORTHO05D004343 6.8e-06 57.4 28 92.9


User provided reference genes

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