Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3516 Utricularia gibba HOM05D004651 ORTHO05D005761 1.8e-37 158.7 77 100.0
MSTRG.6460 Avicennia marina HOM05D004651 ORTHO05D005761 5.7e-15 84.0 57 68.4
SGA_v2.0_scaffold105G30461 Striga asiatica HOM05D004651 ORTHO05D005761 6.3e-14 80.5 57 64.9
Oeu033769.1 Olea europaea HOM05D004651 ORTHO05D005761 3.1e-13 78.2 57 63.2
Migut.J01795 Erythranthe guttata HOM05D004651 ORTHO05D005761 4.1e-13 77.8 57 63.2
Glyma.02G174400 Glycine max HOM05D004651 ORTHO05D005761 2.6e-12 75.1 57 61.4
Glyma.10G093900 Glycine max HOM05D004651 ORTHO05D005761 2.6e-12 75.1 57 61.4
Phvul.007G256600 Phaseolus vulgaris HOM05D004651 ORTHO05D005761 1.7e-11 72.4 57 63.2
Dinv24113 Davidia involucrata HOM05D004651 ORTHO05D005761 2.9e-11 71.6 57 59.6
Cc06_g16440 Coffea canephora HOM05D004651 ORTHO05D005761 3.8e-11 71.2 57 57.9
CSS0019774 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.0e-11 70.9 57 57.9
CSS0028305 Camellia sinensis var. sinensis HOM05D004651 ORTHO05D005761 5.0e-11 70.9 57 57.9
Sed0027459 Sechium edule HOM05D004651 ORTHO05D005761 6.5e-11 70.5 57 59.6
arahy.Tifrunner.gnm1.ann1.F3K4LC Arachis hypogaea HOM05D005399 ORTHO05D006347 1.1e-10 69.7 57 57.9
Sabra06G0040200 Salix brachista HOM05D004651 ORTHO05D005761 1.1e-10 69.7 51 64.7
SGA_v2.0_scaffold94G28447 Striga asiatica HOM05D004651 ORTHO05D005761 1.1e-10 69.7 57 57.9
HanXRQChr10g0294281 Helianthus annuus HOM05D004651 ORTHO05D005761 1.4e-10 69.3 56 58.9
Sabra16G0055100 Salix brachista HOM05D004651 ORTHO05D005761 1.4e-10 69.3 56 62.5
Nn2g15489 Nelumbo nucifera HOM05D004651 ORTHO05D005761 2.5e-10 68.6 51 62.7
Potri.016G051400 Populus trichocarpa HOM05D004651 ORTHO05D005761 2.5e-10 68.6 51 66.7
Rhsim03G0011100 Rhododendron simsii HOM05D004651 ORTHO05D005761 2.5e-10 68.6 57 54.4
Hma1.2p1_0856F.1_g229150 Hydrangea macrophylla HOM05D004651 ORTHO05D005761 3.2e-10 68.2 51 58.8
Manes.09G030500 Manihot esculenta HOM05D004651 ORTHO05D005761 3.2e-10 68.2 57 59.6
CiPaw.10G029700 Carya illinoinensis HOM05D004651 ORTHO05D005761 4.2e-10 67.8 59 57.6
Migut.K00065 Erythranthe guttata HOM05D004651 ORTHO05D005761 4.2e-10 67.8 57 57.9
ClCG04G000490 Citrullus lanatus HOM05D004651 ORTHO05D005761 5.5e-10 67.4 57 57.9
DCAR_013570 Daucus carota HOM05D004651 ORTHO05D005761 5.5e-10 67.4 50 60.0
Lsat_1_v5_gn_9_27580 Lactuca sativa HOM05D004651 ORTHO05D005761 7.2e-10 67.0 56 57.1
Sc19g0006860 Simmondsia chinensis HOM05D004651 ORTHO05D005761 7.2e-10 67.0 49 59.2
Actinidia38568 Actinidia chinensis HOM05D004651 ORTHO05D005761 1.6e-09 65.9 56 53.6
Lj5g0006028 Lotus japonicus HOM05D004651 ORTHO05D005761 2.7e-09 65.1 57 57.9
MD14G1064400 Malus domestica HOM05D004651 ORTHO05D005761 2.7e-09 65.1 44 68.2
GSVIVG01033348001 Vitis vinifera HOM05D000001 ORTHO05D000003 2.7e-09 65.1 57 52.6
Aqoxy2G00117 Aquilegia oxysepala HOM05D004651 ORTHO05D005761 3.6e-09 64.7 56 50.0
MBI01_g38800_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 4.6e-09 64.3 44 68.2
BcaC02g12474 Brassica carinata HOM05D004651 ORTHO05D005761 6.1e-09 63.9 59 57.6
C04p03440 Brassica napus HOM05D004651 ORTHO05D005761 6.1e-09 63.9 59 57.6
BolC4t21980H Brassica oleracea HOM05D004651 ORTHO05D005761 6.1e-09 63.9 59 57.6
Dinv18101 Davidia involucrata HOM05D000001 ORTHO05D000003 6.1e-09 63.9 51 56.9
QL07p022191 Quercus lobata HOM05D004651 ORTHO05D005761 6.1e-09 63.9 50 60.0
Sp4g24480 Schrenkiella parvula HOM05D004651 ORTHO05D005761 6.1e-09 63.9 56 57.1
CANSAT80G2258 Cannabis sativa HOM05D004651 ORTHO05D005761 7.9e-09 63.5 44 65.9
CiPaw.09G033900 Carya illinoinensis HOM05D004651 ORTHO05D005761 7.9e-09 63.5 57 56.1
TWI34G0893 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 7.9e-09 63.5 53 58.5
TWI34G1227 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 7.9e-09 63.5 53 58.5
AUR62024379 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.8e-08 62.4 49 57.1
AUR62025977 Chenopodium quinoa HOM05D004651 ORTHO05D005761 1.8e-08 62.4 49 57.1
MELO3C026725.2 Cucumis melo HOM05D004651 ORTHO05D005761 1.8e-08 62.4 44 68.2
Thhalv10017449m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 1.8e-08 62.4 56 55.4
Nitab4.5_0000603g0080 Nicotiana tabacum HOM05D004651 ORTHO05D005761 1.8e-08 62.4 56 53.6
BcaNung04397 Brassica carinata HOM05D004651 ORTHO05D005761 2.3e-08 62.0 59 55.9
Cpa.g.sc85.122 Carica papaya HOM05D004651 ORTHO05D005761 2.3e-08 62.0 56 53.6
Lsat_1_v5_gn_5_163881 Lactuca sativa HOM05D006723 ORTHO05D008194 2.3e-08 62.0 56 55.4
Zm00001eb034850 Zea mays HOM05D004651 ORTHO05D005761 2.3e-08 62.0 43 62.8
A04p32130 Brassica napus HOM05D004651 ORTHO05D005761 3.0e-08 61.6 56 57.1
A05p02830 Brassica napus HOM05D004651 ORTHO05D005761 3.0e-08 61.6 48 62.5
BraA05t19275Z Brassica rapa HOM05D004651 ORTHO05D005761 3.0e-08 61.6 48 62.5
Carub.0004s2465 Capsella rubella HOM05D004651 ORTHO05D005761 3.0e-08 61.6 56 55.4
Thhalv10006322m.g Eutrema salsugineum HOM05D004651 ORTHO05D005761 3.0e-08 61.6 46 65.2
BcaC01g05307 Brassica carinata HOM05D004651 ORTHO05D005761 3.9e-08 61.2 46 65.2
BcaC02g07250 Brassica carinata HOM05D004651 ORTHO05D005761 3.9e-08 61.2 56 57.1
A03p23620 Brassica napus HOM05D004651 ORTHO05D005761 3.9e-08 61.2 46 65.2
C04p69620 Brassica napus HOM05D004651 ORTHO05D005761 3.9e-08 61.2 56 57.1
BolC4t28461H Brassica oleracea HOM05D004651 ORTHO05D005761 3.9e-08 61.2 56 57.1
BraA03t11578Z Brassica rapa HOM05D004651 ORTHO05D005761 3.9e-08 61.2 46 65.2
MD12G1064300 Malus domestica HOM05D004651 ORTHO05D005761 3.9e-08 61.2 44 65.9
Potri.006G056900 Populus trichocarpa HOM05D004651 ORTHO05D005761 3.9e-08 61.2 50 60.0
RcHm_v2.0_Chr3g0480781 Rosa chinensis HOM05D004651 ORTHO05D005761 3.9e-08 61.2 44 65.9
AL4G40670 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 5.1e-08 60.8 56 55.4
AT2G42310 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 5.1e-08 60.8 56 55.4
BraA04t18667Z Brassica rapa HOM05D004651 ORTHO05D005761 5.1e-08 60.8 56 57.1
FvH4_6g22990 Fragaria vesca HOM05D004651 ORTHO05D005761 5.1e-08 60.8 44 65.9
FAN02G2491 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.1e-08 60.8 44 65.9
FAN05G1131 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.1e-08 60.8 44 65.9
FAN09G0537 Fragaria x ananassa HOM05D004651 ORTHO05D005761 5.1e-08 60.8 44 65.9
Lalb_Chr02g0159821 Lupinus albus HOM05D004651 ORTHO05D005761 5.1e-08 60.8 48 64.6
Ah.04g152020 Amaranthus hybridus HOM05D004651 ORTHO05D005761 6.7e-08 60.5 49 51.0
AL5G39450 Arabidopsis lyrata HOM05D004651 ORTHO05D005761 6.7e-08 60.5 46 63.0
HPP92_022788 Vanilla planifolia HOM05D004651 ORTHO05D005761 6.7e-08 60.5 59 54.2
Duzib128G1036 Durio zibethinus HOM05D004651 ORTHO05D005761 8.8e-08 60.1 48 58.3
MBI11_g15908_MAGBIO Magnolia biondii HOM05D004651 ORTHO05D005761 8.8e-08 60.1 51 56.9
Peaxi162Scf00406g00069 Petunia axillaris HOM05D004651 ORTHO05D005761 8.8e-08 60.1 56 48.2
AT3G57785 Arabidopsis thaliana HOM05D004651 ORTHO05D005761 1.1e-07 59.7 46 63.0
Cfa016877 Carpinus fangiana HOM05D004651 ORTHO05D005761 1.1e-07 59.7 51 58.8
CDE05G0718 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 1.1e-07 59.7 54 50.0
Haze_19923 Corylus avellana HOM05D004651 ORTHO05D005761 1.1e-07 59.7 51 58.8
MD07G1000900 Malus domestica HOM05D004651 ORTHO05D005761 1.1e-07 59.7 37 73.0
Aa31LG10G12520 Aethionema arabicum HOM05D004651 ORTHO05D005761 1.5e-07 59.3 56 53.6
BcaB06g29236 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-07 59.3 56 55.4
BcaC02g07246 Brassica carinata HOM05D004651 ORTHO05D005761 1.5e-07 59.3 56 55.4
CsaV3_4G011920 Cucumis sativus L. HOM05D004651 ORTHO05D005761 1.5e-07 59.3 44 65.9
Manes.08G047600 Manihot esculenta HOM05D004651 ORTHO05D005761 1.5e-07 59.3 57 56.1
Zm00001eb316630 Zea mays HOM05D004651 ORTHO05D005761 1.5e-07 59.3 50 54.0
CDE05G0104 Ceratophyllum demersum HOM05D004651 ORTHO05D005761 2.0e-07 58.9 49 53.1
Aa31LG1G23980 Aethionema arabicum HOM05D004651 ORTHO05D005761 2.6e-07 58.5 56 51.8
EL10Ac3g06986 Beta vulgaris HOM05D004651 ORTHO05D005761 2.6e-07 58.5 49 55.1
Lalb_Chr21g0319241 Lupinus albus HOM05D004651 ORTHO05D005761 2.6e-07 58.5 52 59.6
Prupe.7G069800 Prunus persica HOM05D004651 ORTHO05D005761 3.3e-07 58.2 44 63.6
Atru.chr1.949 Acer truncatum HOM05D004651 ORTHO05D005761 4.4e-07 57.8 48 58.3
Carub.0005s2464 Capsella rubella HOM05D004651 ORTHO05D005761 5.7e-07 57.4 46 60.9
Psat6g130960 Pisum sativum HOM05D004651 ORTHO05D005761 5.7e-07 57.4 44 63.6
Gohir.A11G313600 Gossypium hirsutum HOM05D004651 ORTHO05D005761 7.4e-07 57.0 59 47.5
PSO384G0298 Papaver somniferum HOM05D004651 ORTHO05D005761 7.4e-07 57.0 51 52.9
Thecc.05G165000 Theobroma cacao HOM05D004651 ORTHO05D005761 7.4e-07 57.0 48 54.2
Ah.13g076160 Amaranthus hybridus HOM05D004651 ORTHO05D005761 9.7e-07 56.6 49 51.0
Ca_04847_v3 Cicer arietinum L. HOM05D004651 ORTHO05D005761 9.7e-07 56.6 44 63.6
COL.COLO4_28721 Corchorus olitorius HOM05D004651 ORTHO05D005761 9.7e-07 56.6 56 48.2
Eucgr.A02412 Eucalyptus grandis HOM05D000001 ORTHO05D000003 9.7e-07 56.6 48 56.2
Nitab4.5_0003477g0030 Nicotiana tabacum HOM05D004651 ORTHO05D005761 9.7e-07 56.6 49 53.1
PGR004G2434 Punica granatum HOM05D004651 ORTHO05D005761 9.7e-07 56.6 48 56.2
Solyc02g085540.1 Solanum lycopersicum HOM05D004651 ORTHO05D005761 9.7e-07 56.6 56 46.4
Sopen02g030210 Solanum pennellii HOM05D004651 ORTHO05D005761 9.7e-07 56.6 56 46.4
PGSC0003DMG400012662 Solanum tuberosum HOM05D004651 ORTHO05D005761 9.7e-07 56.6 56 46.4
TWI60G1376 Tripterygium wilfordii HOM05D004651 ORTHO05D005761 9.7e-07 56.6 53 54.7
Prupe.5G050600 Prunus persica HOM05D004651 ORTHO05D005761 1.3e-06 56.2 44 61.4
ECA236G1810 Erigeron canadensis HOM05D004651 ORTHO05D005761 1.7e-06 55.8 43 62.8
Gohir.D11G330800 Gossypium hirsutum HOM05D004651 ORTHO05D005761 1.7e-06 55.8 48 54.2
PSO339G4089 Papaver somniferum HOM05D004651 ORTHO05D005761 1.7e-06 55.8 51 51.0
THA.LOC104802364 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 1.7e-06 55.8 56 48.2
Gohir.D11G330900 Gossypium hirsutum HOM05D004651 ORTHO05D005761 2.2e-06 55.5 48 54.2
Nitab4.5_0004063g0110 Nicotiana tabacum HOM05D004651 ORTHO05D005761 2.2e-06 55.5 56 48.2
CARHR137350 Cardamine hirsuta HOM05D004651 ORTHO05D005761 2.8e-06 55.1 46 60.9
Gorai.007G361600 Gossypium raimondii HOM05D004651 ORTHO05D005761 2.8e-06 55.1 48 54.2
Sed0009176 Sechium edule HOM05D004651 ORTHO05D005761 2.8e-06 55.1 46 58.7
THA.LOC104819088 Tarenaya hassleriana HOM05D004651 ORTHO05D005761 2.8e-06 55.1 46 56.5
Gorai.007G361500 Gossypium raimondii HOM05D004651 ORTHO05D005761 3.7e-06 54.7 48 52.1
Medtr1g059290 Medicago truncatula HOM05D004651 ORTHO05D005761 3.7e-06 54.7 44 59.1
Peaxi162Scf00285g00014 Petunia axillaris HOM05D004651 ORTHO05D005761 3.7e-06 54.7 43 58.1
Duzib093G1593 Durio zibethinus HOM05D004651 ORTHO05D005761 4.8e-06 54.3 48 54.2
Nitab4.5_0001347g0050 Nicotiana tabacum HOM05D004651 ORTHO05D005761 4.8e-06 54.3 56 46.4
Ciclev10006760m.g Citrus clementina HOM05D000001 ORTHO05D000003 6.3e-06 53.9 48 52.1
Sp5g04900 Schrenkiella parvula HOM05D004651 ORTHO05D005761 6.3e-06 53.9 48 54.2
TAR623G0603 Trochodendron aralioides HOM05D004651 ORTHO05D005761 8.2e-06 53.5 57 45.6


User provided reference genes

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