Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3321 Utricularia gibba HOM05D007662 ORTHO05D009666 1.7e-38 162.2 80 100.0
SalBow6G4367 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.3e-11 72.0 43 79.1
SalBow8G2777 Salvia bowleyana HOM05D007662 ORTHO05D009666 2.3e-11 72.0 43 79.1
Oeu002702.1 Olea europaea HOM05D007662 ORTHO05D009666 4.0e-11 71.2 45 77.8
Peaxi162Scf00336g00087 Petunia axillaris HOM05D007662 ORTHO05D009666 1.1e-10 69.7 40 85.0
Hma1.2p1_0972F.1_g242860 Hydrangea macrophylla HOM05D007662 ORTHO05D009666 1.5e-10 69.3 46 69.6
Migut.N02119 Erythranthe guttata HOM05D007662 ORTHO05D009666 2.0e-10 68.9 41 80.5
Nitab4.5_0000488g0050 Nicotiana tabacum HOM05D007662 ORTHO05D009666 2.0e-10 68.9 38 89.5
Nitab4.5_0007654g0010 Nicotiana tabacum HOM05D007662 ORTHO05D009666 2.6e-10 68.6 38 86.8
Solyc01g020320.3 Solanum lycopersicum HOM05D007662 ORTHO05D009666 2.6e-10 68.6 38 86.8
Sopen01g015220 Solanum pennellii HOM05D007662 ORTHO05D009666 2.6e-10 68.6 38 86.8
PGSC0003DMG400015999 Solanum tuberosum HOM05D007662 ORTHO05D009666 2.6e-10 68.6 38 86.8
Peaxi162Scf00451g00322 Petunia axillaris HOM05D007662 ORTHO05D009666 3.3e-10 68.2 45 73.3
Rhsim02G0233800 Rhododendron simsii HOM05D007662 ORTHO05D009666 3.3e-10 68.2 39 82.1
HanXRQChr02g0056871 Helianthus annuus HOM05D007662 ORTHO05D009666 4.4e-10 67.8 40 80.0
TAR623G1524 Trochodendron aralioides HOM05D007662 ORTHO05D009666 5.7e-10 67.4 49 73.5
Glyma.18G180600 Glycine max HOM05D007662 ORTHO05D009666 7.5e-10 67.0 49 67.3
Nn7g35960 Nelumbo nucifera HOM05D007662 ORTHO05D009666 7.5e-10 67.0 39 79.5
PSO384G2541 Papaver somniferum HOM05D007662 ORTHO05D009666 7.5e-10 67.0 46 69.6
Cpa.g.sc119.89 Carica papaya HOM05D007662 ORTHO05D009666 9.7e-10 66.6 39 79.5
Cc01_g01030 Coffea canephora HOM05D007662 ORTHO05D009666 9.7e-10 66.6 47 68.1
Rhsim02G0233900 Rhododendron simsii HOM05D007662 ORTHO05D009666 9.7e-10 66.6 39 79.5
CSS0010518 Camellia sinensis var. sinensis HOM05D007662 ORTHO05D009666 2.2e-09 65.5 39 79.5
Cfa009623 Carpinus fangiana HOM05D007662 ORTHO05D009666 2.2e-09 65.5 40 75.0
Haze_22992 Corylus avellana HOM05D007662 ORTHO05D009666 2.2e-09 65.5 40 75.0
GSVIVG01025388001 Vitis vinifera HOM05D007662 ORTHO05D009666 2.2e-09 65.5 42 76.2
PGSC0003DMG400017905 Solanum tuberosum HOM05D007662 ORTHO05D009666 2.8e-09 65.1 38 84.2
Gohir.A08G012100 Gossypium hirsutum HOM05D007662 ORTHO05D009666 3.7e-09 64.7 38 81.6
Gohir.D08G022600 Gossypium hirsutum HOM05D007662 ORTHO05D009666 3.7e-09 64.7 38 81.6
Gorai.004G017900 Gossypium raimondii HOM05D007662 ORTHO05D009666 3.7e-09 64.7 38 81.6
Lsat_1_v5_gn_6_51400 Lactuca sativa HOM05D007662 ORTHO05D009666 3.7e-09 64.7 48 64.6
CANSAT54G1122 Cannabis sativa HOM05D007662 ORTHO05D009666 4.8e-09 64.3 42 73.8
Glyma.07G131900 Glycine max HOM05D007662 ORTHO05D009666 4.8e-09 64.3 42 73.8
Lj1g0001682 Lotus japonicus HOM05D007662 ORTHO05D009666 4.8e-09 64.3 40 77.5
MBI13_g29646_MAGBIO Magnolia biondii HOM05D007662 ORTHO05D009666 4.8e-09 64.3 46 67.4
Manes.15G104500 Manihot esculenta HOM05D007662 ORTHO05D009666 4.8e-09 64.3 46 71.7
Phvul.008G106450 Phaseolus vulgaris HOM05D007662 ORTHO05D009666 4.8e-09 64.3 49 65.3
CARHR111030 Cardamine hirsuta HOM05D007662 ORTHO05D009666 1.1e-08 63.2 39 74.4
MD03G1011000 Malus domestica HOM05D007662 ORTHO05D009666 1.1e-08 63.2 38 78.9
Prupe.6G011500 Prunus persica HOM05D007662 ORTHO05D009666 1.1e-08 63.2 38 78.9
AL3G53480 Arabidopsis lyrata HOM05D007662 ORTHO05D009666 1.4e-08 62.8 39 74.4
Carub.0003s3490 Capsella rubella HOM05D007662 ORTHO05D009666 1.4e-08 62.8 39 74.4
Carub.0003s3492 Capsella rubella HOM05D007662 ORTHO05D009666 1.4e-08 62.8 39 74.4
CiPaw.12G007400 Carya illinoinensis HOM05D007662 ORTHO05D009666 1.4e-08 62.8 40 72.5
FAN11G0548 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.4e-08 62.8 36 83.3
FAN16G0597 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.4e-08 62.8 36 83.3
FAN21G0034 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.4e-08 62.8 36 83.3
FAN25G2111 Fragaria x ananassa HOM05D007662 ORTHO05D009666 1.4e-08 62.8 36 83.3
PGR119G1192 Punica granatum HOM05D007662 ORTHO05D009666 1.4e-08 62.8 37 78.4
RcHm_v2.0_Chr5g0081401 Rosa chinensis HOM05D007662 ORTHO05D009666 1.4e-08 62.8 36 83.3
Aa31LG8G17430 Aethionema arabicum HOM05D007662 ORTHO05D009666 2.4e-08 62.0 39 71.8
Duzib168G0137 Durio zibethinus HOM05D007662 ORTHO05D009666 3.1e-08 61.6 38 76.3
Aqoxy1G00152 Aquilegia oxysepala HOM05D007662 ORTHO05D009666 4.1e-08 61.2 40 70.0
Psat3g140280 Pisum sativum HOM05D007662 ORTHO05D009666 4.1e-08 61.2 45 66.7
arahy.Tifrunner.gnm1.ann1.MELV6S Arachis hypogaea HOM05D007662 ORTHO05D009666 5.3e-08 60.8 40 72.5
COL.COLO4_10450 Corchorus olitorius HOM05D007662 ORTHO05D009666 7.0e-08 60.5 48 62.5
DCAR_024358 Daucus carota HOM05D007662 ORTHO05D009666 9.1e-08 60.1 49 61.2
Eucgr.B02616 Eucalyptus grandis HOM05D007662 ORTHO05D009666 9.1e-08 60.1 37 78.4
Eucgr.L03549 Eucalyptus grandis HOM05D007662 ORTHO05D009666 9.1e-08 60.1 37 78.4
Lalb_Chr03g0042221 Lupinus albus HOM05D007662 ORTHO05D009666 9.1e-08 60.1 45 64.4
Medtr4g095740 Medicago truncatula HOM05D007662 ORTHO05D009666 9.1e-08 60.1 42 71.4
Thecc.09G214700 Theobroma cacao HOM05D007662 ORTHO05D009666 9.1e-08 60.1 38 78.9
AT2G20480 Arabidopsis thaliana HOM05D007662 ORTHO05D009666 1.2e-07 59.7 39 71.8
Potri.001G009501 Populus trichocarpa HOM05D007662 ORTHO05D009666 1.2e-07 59.7 44 65.9
Sabra01G0007400 Salix brachista HOM05D007662 ORTHO05D009666 1.2e-07 59.7 39 69.2
TWI32G0733 Tripterygium wilfordii HOM05D007662 ORTHO05D009666 1.2e-07 59.7 39 74.4
ECA233G5312 Erigeron canadensis HOM05D007662 ORTHO05D009666 1.6e-07 59.3 38 73.7
Prupe.2G113800 Prunus persica HOM05D007662 ORTHO05D009666 1.6e-07 59.3 37 78.4
Thhalv10002142m.g Eutrema salsugineum HOM05D007662 ORTHO05D009666 2.0e-07 58.9 47 61.7
Atru.chr3.2207 Acer truncatum HOM05D007662 ORTHO05D009666 2.7e-07 58.5 37 73.0
arahy.Tifrunner.gnm1.ann1.0G84UH Arachis hypogaea HOM05D007662 ORTHO05D009666 3.5e-07 58.2 40 70.0
Sed0021510 Sechium edule HOM05D007662 ORTHO05D009666 3.5e-07 58.2 44 65.9
Manes.04G126551 Manihot esculenta HOM05D007662 ORTHO05D009666 4.5e-07 57.8 46 67.4
ATR0598G132 Amborella trichopoda HOM05D007662 ORTHO05D009666 5.9e-07 57.4 39 66.7
HPP92_019156 Vanilla planifolia HOM05D007662 ORTHO05D009666 7.7e-07 57.0 39 69.2
Os09g0446000 Oryza sativa ssp. japonica HOM05D007662 ORTHO05D009666 1.0e-06 56.6 37 67.6
CsaV3_4G023520 Cucumis sativus L. HOM05D007662 ORTHO05D009666 1.3e-06 56.2 37 75.7
BcaB03g16842 Brassica carinata HOM05D007662 ORTHO05D009666 1.7e-06 55.8 43 65.1
Sp3g33680 Schrenkiella parvula HOM05D007662 ORTHO05D009666 1.7e-06 55.8 39 69.2
BcaC06g36736 Brassica carinata HOM05D007662 ORTHO05D009666 2.2e-06 55.5 38 71.1
A07p00270 Brassica napus HOM05D007662 ORTHO05D009666 2.2e-06 55.5 38 71.1
C07p00560 Brassica napus HOM05D007662 ORTHO05D009666 2.2e-06 55.5 38 71.1
BolC7t40501H Brassica oleracea HOM05D007662 ORTHO05D009666 2.2e-06 55.5 38 71.1
BraA07t27819Z Brassica rapa HOM05D007662 ORTHO05D009666 2.2e-06 55.5 38 71.1
C08p42210 Brassica napus HOM05D007662 ORTHO05D009666 2.9e-06 55.1 46 58.7
ClCG02G023850 Citrullus lanatus HOM05D007662 ORTHO05D009666 2.9e-06 55.1 37 73.0
BolC8t51780H Brassica oleracea HOM05D007662 ORTHO05D009666 3.8e-06 54.7 45 60.0
BcaB08g34910 Brassica carinata HOM05D007662 ORTHO05D009666 5.0e-06 54.3 45 60.0
A09p58880 Brassica napus HOM05D007662 ORTHO05D009666 5.0e-06 54.3 43 60.5
BraA09t41274Z Brassica rapa HOM05D007662 ORTHO05D009666 5.0e-06 54.3 43 60.5


User provided reference genes

Program Settings