Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3035 Utricularia gibba HOM05D004311 ORTHO05D005145 2.0e-228 795.4 401 100.0
MSTRG.20570 Avicennia marina HOM05D004311 ORTHO05D005145 4.9e-94 349.0 405 49.4
SalBow3G3821 Salvia bowleyana HOM05D004311 ORTHO05D005145 1.9e-93 347.1 382 50.8
SGA_v2.0_scaffold12G06156 Striga asiatica HOM05D004311 ORTHO05D005145 1.2e-92 344.4 433 48.5
Migut.G01038 Erythranthe guttata HOM05D004311 ORTHO05D005145 1.1e-82 311.2 399 47.4
Peaxi162Scf00319g00915 Petunia axillaris HOM05D004311 ORTHO05D005145 4.8e-81 305.8 389 48.8
Atru.chr5.2612 Acer truncatum HOM05D004311 ORTHO05D005145 2.6e-79 300.1 403 45.7
Actinidia35905 Actinidia chinensis HOM05D004311 ORTHO05D005145 4.5e-79 299.3 402 45.3
Cc03_g13030 Coffea canephora HOM05D004311 ORTHO05D005145 7.6e-79 298.5 401 45.1
Atru.chr3.1596 Acer truncatum HOM05D004311 ORTHO05D005145 1.9e-77 293.9 385 46.2
Ciclev10019191m.g Citrus clementina HOM05D004311 ORTHO05D005145 2.7e-76 290.0 422 42.9
CAN.G710.65 Capsicum annuum HOM05D004311 ORTHO05D005145 3.0e-75 286.6 392 44.6
Manes.11G116001 Manihot esculenta HOM05D004311 ORTHO05D005145 5.1e-75 285.8 416 44.0
HanXRQChr07g0186701 Helianthus annuus HOM05D004311 ORTHO05D005145 1.9e-74 283.9 380 45.0
GSVIVG01013563001 Vitis vinifera HOM05D004311 ORTHO05D005145 5.7e-74 282.3 433 41.1
Gohir.A10G134400 Gossypium hirsutum HOM05D004311 ORTHO05D005145 9.6e-74 281.6 407 44.5
Gorai.011G145800 Gossypium raimondii HOM05D004311 ORTHO05D005145 1.3e-73 281.2 407 44.2
Thecc.04G184200 Theobroma cacao HOM05D004311 ORTHO05D005145 1.6e-73 280.8 397 43.8
Sopen09g036480 Solanum pennellii HOM05D004311 ORTHO05D005145 2.1e-73 280.4 427 40.7
Gohir.D10G132100 Gossypium hirsutum HOM05D004311 ORTHO05D005145 6.3e-73 278.9 407 44.2
Solyc09g098560.2 Solanum lycopersicum HOM05D004311 ORTHO05D005145 1.4e-72 277.7 426 40.8
CiPaw.01G102900 Carya illinoinensis HOM05D004311 ORTHO05D005145 5.3e-72 275.8 407 41.8
Duzib268G0197 Durio zibethinus HOM05D004311 ORTHO05D005145 5.3e-72 275.8 397 43.3
arahy.Tifrunner.gnm1.ann1.TTS68P Arachis hypogaea HOM05D004311 ORTHO05D005145 2.0e-71 273.9 436 40.4
arahy.Tifrunner.gnm1.ann1.D3CYL9 Arachis hypogaea HOM05D004311 ORTHO05D005145 5.9e-71 272.3 440 40.9
Lsat_1_v5_gn_6_54900 Lactuca sativa HOM05D004311 ORTHO05D005145 1.0e-70 271.6 364 44.0
TWI34G1341 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 3.8e-70 269.6 464 40.3
Nitab4.5_0006710g0020 Nicotiana tabacum HOM05D004311 ORTHO05D005145 8.5e-70 268.5 415 41.0
COL.COLO4_24387 Corchorus olitorius HOM05D004311 ORTHO05D005145 1.9e-69 267.3 288 51.7
FvH4_4g11290 Fragaria vesca HOM05D004311 ORTHO05D005145 2.5e-69 266.9 400 43.0
Sc19g0002150 Simmondsia chinensis HOM05D004311 ORTHO05D005145 2.5e-69 266.9 380 43.2
CANSAT11G1749 Cannabis sativa HOM05D004311 ORTHO05D005145 4.2e-69 266.2 397 43.6
FAN17G0085 Fragaria x ananassa HOM05D004311 ORTHO05D005145 4.2e-69 266.2 446 38.8
Sabra17G0023900 Salix brachista HOM05D004311 ORTHO05D005145 5.5e-69 265.8 420 40.5
Hund12225 Selenicereus undatus HOM05D004311 ORTHO05D005145 4.6e-68 262.7 372 44.9
Potri.017G036200 Populus trichocarpa HOM05D004311 ORTHO05D005145 7.9e-68 261.9 414 41.5
FAN07G0445 Fragaria x ananassa HOM05D004311 ORTHO05D005145 2.3e-67 260.4 436 39.0
Glyma.20G245800 Glycine max HOM05D004311 ORTHO05D005145 3.0e-67 260.0 385 43.1
Sed0012126 Sechium edule HOM05D004311 ORTHO05D005145 3.0e-67 260.0 375 42.7
Rhsim09G0031800 Rhododendron simsii HOM05D004311 ORTHO05D005145 3.9e-67 259.6 508 36.0
Lj5g0018220 Lotus japonicus HOM05D004311 ORTHO05D005145 6.7e-67 258.8 375 42.9
Eucgr.A00251 Eucalyptus grandis HOM05D004311 ORTHO05D005145 1.5e-66 257.7 391 40.2
EL10Ac3g06308 Beta vulgaris HOM05D004311 ORTHO05D005145 7.4e-66 255.4 376 41.8
Nn2g11494 Nelumbo nucifera HOM05D004311 ORTHO05D005145 7.4e-66 255.4 444 39.2
TPR.G10413 Trifolium pratense HOM05D004311 ORTHO05D005145 9.7e-66 255.0 384 44.0
THA.LOC104821356 Tarenaya hassleriana HOM05D004311 ORTHO05D005145 1.3e-65 254.6 400 41.8
MELO3C017696.2 Cucumis melo HOM05D004311 ORTHO05D005145 2.2e-65 253.8 376 43.1
Ca_11399_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 3.7e-65 253.1 431 39.2
Ca_11402_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 3.7e-65 253.1 431 39.2
Ca_29593_v3 Cicer arietinum L. HOM05D004311 ORTHO05D005145 3.7e-65 253.1 431 39.2
Medtr1g116530 Medicago truncatula HOM05D004311 ORTHO05D005145 4.8e-65 252.7 401 41.6
PGR083G0820 Punica granatum HOM05D004311 ORTHO05D005145 6.3e-65 252.3 390 42.6
CsaV3_4G003570 Cucumis sativus L. HOM05D004311 ORTHO05D005145 1.4e-64 251.1 425 40.9
Lj6A60T46 Lonicera japonica HOM05D004311 ORTHO05D005145 1.4e-64 251.1 326 46.6
vmacro00589 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.4e-64 251.1 288 49.0
VMungo0720G0448 Vigna mungo HOM05D004311 ORTHO05D005145 2.4e-64 250.4 368 42.7
MBI08_g33649_MAGBIO Magnolia biondii HOM05D004311 ORTHO05D005145 3.1e-64 250.0 384 39.8
Dinv44218 Davidia involucrata HOM05D004311 ORTHO05D005145 4.1e-64 249.6 373 40.5
Potri.007G124150 Populus trichocarpa HOM05D004311 ORTHO05D005145 4.1e-64 249.6 411 39.9
Cfa015780 Carpinus fangiana HOM05D004311 ORTHO05D005145 5.3e-64 249.2 403 39.2
Haze_00714 Corylus avellana HOM05D004311 ORTHO05D005145 1.2e-63 248.1 449 37.6
Glyma.10G295800 Glycine max HOM05D004311 ORTHO05D005145 2.0e-63 247.3 387 41.9
Nitab4.5_0000526g0040 Nicotiana tabacum HOM05D004311 ORTHO05D005145 2.6e-63 246.9 281 48.8
Phvul.007G004100 Phaseolus vulgaris HOM05D004311 ORTHO05D005145 5.9e-63 245.7 387 40.3
AUR62002610 Chenopodium quinoa HOM05D004311 ORTHO05D005145 1.7e-62 244.2 380 39.7
DCAR_028443 Daucus carota HOM05D004311 ORTHO05D005145 1.7e-62 244.2 418 38.0
MD04G1038300 Malus domestica HOM05D004311 ORTHO05D005145 1.7e-62 244.2 293 47.4
Lalb_Chr21g0307601 Lupinus albus HOM05D004311 ORTHO05D005145 5.0e-62 242.7 413 39.0
AUR62030033 Chenopodium quinoa HOM05D004311 ORTHO05D005145 6.5e-62 242.3 381 37.8
Psat6g241440 Pisum sativum HOM05D004311 ORTHO05D005145 7.2e-61 238.8 428 38.6
RcHm_v2.0_Chr4g0407531 Rosa chinensis HOM05D004311 ORTHO05D005145 7.9e-60 235.3 302 45.7
HPP92_009171 Vanilla planifolia HOM05D004311 ORTHO05D005145 5.1e-59 232.6 419 37.7
Actinidia33018 Actinidia chinensis HOM05D004311 ORTHO05D005145 6.7e-59 232.3 357 40.9
TAR375G1135 Trochodendron aralioides HOM05D004311 ORTHO05D005145 3.3e-58 229.9 407 38.8
SHI06503 Sapria himalayana HOM05D004311 ORTHO05D005145 7.4e-58 228.8 279 47.0
ClCG07G015850 Citrullus lanatus HOM05D004311 ORTHO05D005145 6.3e-57 225.7 266 48.5
Aa31LG2G1780 Aethionema arabicum HOM05D004311 ORTHO05D005145 1.1e-56 224.9 420 37.1
Aqoxy5G04052 Aquilegia oxysepala HOM05D004311 ORTHO05D005145 3.1e-56 223.4 407 37.1
CDE02G0781 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 6.9e-56 222.2 409 36.2
Carub.0004s2496 Capsella rubella HOM05D004311 ORTHO05D005145 9.1e-56 221.9 403 36.5
BcaNung03232 Brassica carinata HOM05D004311 ORTHO05D005145 1.2e-55 221.5 367 37.6
BcaC02g12437 Brassica carinata HOM05D004311 ORTHO05D005145 2.0e-55 220.7 364 36.5
Oeu007717.1 Olea europaea HOM05D004311 ORTHO05D005145 7.7e-55 218.8 245 52.7
Sp4g24640 Schrenkiella parvula HOM05D004311 ORTHO05D005145 7.7e-55 218.8 400 35.5
C04p03710 Brassica napus HOM05D004311 ORTHO05D005145 2.2e-54 217.2 365 36.7
BolC4t22005H Brassica oleracea HOM05D004311 ORTHO05D005145 2.9e-54 216.9 365 37.0
BcaC02g07234 Brassica carinata HOM05D004311 ORTHO05D005145 6.5e-54 215.7 361 38.5
BraA05t19299Z Brassica rapa HOM05D004311 ORTHO05D005145 1.1e-53 214.9 368 37.0
A05p03080 Brassica napus HOM05D004311 ORTHO05D005145 1.4e-53 214.5 368 37.0
C04p69770 Brassica napus HOM05D004311 ORTHO05D005145 1.4e-53 214.5 361 38.5
Sabra17G0023400 Salix brachista HOM05D004311 ORTHO05D005145 1.9e-53 214.2 315 41.3
ATR0743G139 Amborella trichopoda HOM05D004311 ORTHO05D005145 5.5e-53 212.6 374 36.9
CDE09G0340 Ceratophyllum demersum HOM05D004311 ORTHO05D005145 5.5e-53 212.6 417 34.5
Nitab4.5_0004962g0030 Nicotiana tabacum HOM05D004311 ORTHO05D005145 1.6e-52 211.1 371 37.2
QL10p045440 Quercus lobata HOM05D004311 ORTHO05D005145 6.1e-52 209.1 387 34.6
CARHR055450 Cardamine hirsuta HOM05D004311 ORTHO05D005145 5.2e-51 206.1 404 38.4
Dinv22688 Davidia involucrata HOM05D004311 ORTHO05D005145 2.2e-49 200.7 361 38.8
Zm00001eb248350 Zea mays HOM05D004311 ORTHO05D005145 7.0e-48 195.7 285 40.7
PSO675G5961 Papaver somniferum HOM05D004311 ORTHO05D005145 9.1e-48 195.3 413 35.1
AT1G54380 Arabidopsis thaliana HOM05D004311 ORTHO05D005145 3.5e-47 193.4 415 35.7
Os11g0293300 Oryza sativa ssp. japonica HOM05D004311 ORTHO05D005145 1.3e-46 191.4 388 37.4
PSO017G7323 Papaver somniferum HOM05D004311 ORTHO05D005145 9.4e-45 185.3 416 34.4
SEGI_09077 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 1.6e-44 184.5 298 37.2
Prupe.1G189100 Prunus persica HOM05D004311 ORTHO05D005145 1.0e-43 181.8 255 47.1
SMO351G0426 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 5.7e-42 176.0 272 40.1
FAN22G0235 Fragaria x ananassa HOM05D004311 ORTHO05D005820 4.8e-41 172.9 249 43.8
SMO273G0052 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 9.1e-40 168.7 267 40.1
Cpa.g.sc73.18 Carica papaya HOM05D004311 ORTHO05D005145 6.5e-38 162.5 224 45.1
TWI60G0507 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 1.1e-37 161.8 249 38.6
Pp3c18_5230 Physcomitrium patens HOM05D004311 ORTHO05D005145 3.2e-37 160.2 352 33.8
CBR_g48670 Chara braunii HOM05D004311 ORTHO05D005145 4.0e-35 153.3 369 33.6
Lalb_Chr02g0144311 Lupinus albus HOM05D004311 ORTHO05D005145 2.6e-34 150.6 252 38.5
SMO174G0256 Selaginella moellendorffii HOM05D004311 ORTHO05D005145 4.8e-33 146.4 274 33.2
AagrBONN_evm.TU.Sc2ySwM_228.1282 Anthoceros agrestis HOM05D004311 ORTHO05D005145 1.7e-30 137.9 419 29.1
BcaB06g29252 Brassica carinata HOM05D004311 ORTHO05D005145 4.7e-28 129.8 362 28.7
Thhalv10017985m.g Eutrema salsugineum HOM05D004311 ORTHO05D005145 4.4e-26 123.2 200 37.5
Haze_00722 Corylus avellana HOM05D001997 ORTHO05D004620 1.1e-24 118.6 148 45.3
BcaNung05216 Brassica carinata HOM05D004311 ORTHO05D005145 2.4e-24 117.5 284 30.3
Duzib151G0942 Durio zibethinus HOM05D004311 ORTHO05D005145 7.8e-23 112.5 212 38.2
Nitab4.5_0001049g0080 Nicotiana tabacum HOM05D004311 ORTHO05D005145 6.6e-22 109.4 152 42.1
Mapoly0064s0042 Marchantia polymorpha HOM05D004311 ORTHO05D005145 8.6e-22 109.0 117 53.0
TWI60G1520 Tripterygium wilfordii HOM05D004311 ORTHO05D005145 2.3e-19 100.9 119 45.4
Prupe.1G188800 Prunus persica HOM05D004311 ORTHO05D005145 4.4e-18 96.7 189 33.9
MCO03G002 Micromonas commoda HOM05D004311 ORTHO05D005145 1.2e-15 88.6 263 29.3
SGA_v2.0_scaffold290G47298 Striga asiatica HOM05D002786 ORTHO05D003493 6.8e-11 72.8 103 41.7
BolC4t28477H Brassica oleracea HOM05D004311 ORTHO05D005145 4.4e-10 70.1 130 35.4
BcaNung00544 Brassica carinata HOM05D004311 ORTHO05D005145 7.5e-10 69.3 88 35.2
Lj6A60T47 Lonicera japonica HOM05D004311 ORTHO05D005145 7.5e-10 69.3 59 57.6
CARHR137590 Cardamine hirsuta HOM05D004311 ORTHO05D005145 1.3e-09 68.6 48 66.7
vmacro00590 Vaccinium macrocarpon HOM05D004311 ORTHO05D005145 1.9e-08 64.7 120 37.5
CSS0021437 Camellia sinensis var. sinensis HOM05D004311 ORTHO05D005145 2.0e-07 61.2 104 36.5
Hma1.2p1_0429F.1_g151120 Hydrangea macrophylla HOM05D004311 ORTHO05D005145 2.0e-07 61.2 72 43.1
Oeu050349.1 Olea europaea HOM05D004311 ORTHO05D005145 2.0e-07 61.2 96 39.6
Cre09.g405650 Chlamydomonas reinhardtii HOM05D004311 ORTHO05D005145 3.5e-07 60.5 61 47.5
MSTRG.21993 Avicennia marina HOM05D004311 ORTHO05D005145 2.3e-06 57.8 92 44.6
SEGI_08315 Sequoiadendron giganteum HOM05D004311 ORTHO05D005145 3.9e-06 57.0 52 55.8


User provided reference genes

Program Settings