Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 0.0e+00 1478.8 756 100.0
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 0.0e+00 1144.8 758 76.6
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 0.0e+00 1094.7 765 71.9
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 0.0e+00 1082.4 760 72.5
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 2.1e-311 1072.0 745 73.8
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 3.7e-300 1034.6 757 69.6
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 1.1e-299 1033.1 755 70.1
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.0e-298 1028.9 750 69.6
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 8.5e-297 1023.5 755 68.6
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.1e-295 1018.8 759 68.0
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 2.7e-295 1018.5 760 68.6
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 1.0e-294 1016.5 755 68.2
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 2.3e-294 1015.4 782 66.9
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 3.0e-294 1015.0 750 69.5
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 5.1e-294 1014.2 749 69.3
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 7.4e-293 1010.4 747 67.7
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 1.4e-291 1006.1 757 67.6
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 3.4e-290 1001.5 752 67.6
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 4.5e-290 1001.1 753 67.3
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 2.2e-289 998.8 756 66.9
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.9e-288 995.7 756 66.7
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 2.7e-287 991.9 751 67.2
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 6.1e-287 990.7 750 66.4
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 2.3e-286 988.8 745 66.8
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 5.1e-286 987.6 745 66.8
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 6.7e-286 987.3 749 66.8
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 8.8e-286 986.9 746 68.5
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 8.8e-286 986.9 749 67.2
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.1e-285 986.5 755 66.1
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 1.5e-285 986.1 755 66.6
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.5e-285 986.1 750 65.9
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.0e-285 985.7 753 66.8
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 2.0e-285 985.7 743 67.3
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 3.3e-285 984.9 750 65.9
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 5.7e-285 984.2 755 66.0
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 5.7e-285 984.2 755 65.7
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 5.7e-285 984.2 749 66.2
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 5.7e-285 984.2 766 66.1
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 7.4e-285 983.8 755 66.9
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 7.4e-285 983.8 750 66.7
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 2.2e-284 982.2 749 67.0
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 3.7e-284 981.5 771 66.7
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 8.2e-284 980.3 746 66.6
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 5.3e-283 977.6 746 66.8
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 5.3e-283 977.6 754 66.3
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 7.0e-283 977.2 771 66.4
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.1e-283 976.9 763 67.1
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.6e-282 975.3 712 70.4
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 3.5e-282 974.9 749 66.4
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 3.5e-282 974.9 749 65.0
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 5.9e-282 974.2 751 65.4
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 1.1e-280 969.9 754 66.3
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 5.5e-280 967.6 756 65.1
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 7.2e-280 967.2 751 65.6
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 1.2e-279 966.5 757 63.8
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 2.1e-279 965.7 757 63.7
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 2.1e-279 965.7 762 64.6
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 5.2e-278 961.1 757 64.7
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 4.4e-277 958.0 762 64.3
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 1.3e-276 956.4 751 65.1
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 2.8e-276 955.3 755 65.6
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 6.3e-276 954.1 751 65.9
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 8.2e-276 953.7 755 65.4
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 1.8e-275 952.6 747 64.5
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 1.8e-275 952.6 757 64.7
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 2.4e-275 952.2 754 64.9
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 3.1e-275 951.8 755 65.0
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 4.1e-275 951.4 752 65.0
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 5.3e-275 951.0 752 64.5
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 5.3e-275 951.0 754 65.0
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 1.3e-273 946.4 748 65.1
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 7.2e-272 940.6 754 63.9
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 9.4e-272 940.3 756 64.6
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 4.7e-271 937.9 751 64.2
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 1.0e-270 936.8 752 63.7
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 2.2e-268 929.1 754 62.7
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 1.8e-267 926.0 749 64.2
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 9.1e-267 923.7 749 62.8
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 1.1e-264 916.8 754 62.7
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 1.1e-264 916.8 754 62.7
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 1.9e-264 916.0 748 62.7
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 1.9e-264 916.0 748 62.7
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 4.2e-264 914.8 751 62.5
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 7.2e-264 914.1 750 62.8
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 7.2e-264 914.1 750 62.8
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 7.2e-264 914.1 750 62.4
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 9.4e-264 913.7 749 62.9
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 4.7e-263 911.4 749 62.8
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 4.7e-263 911.4 749 62.8
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 2.8e-260 902.1 773 60.5
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 7.7e-258 894.0 758 60.6
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 3.6e-255 885.2 686 65.9
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 5.2e-254 881.3 749 60.5
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.1e-247 859.4 772 60.4
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 7.5e-245 850.9 747 59.8
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 3.2e-243 845.5 749 59.4
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 7.8e-242 840.9 748 58.0
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 1.5e-240 836.6 747 57.2
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 4.3e-240 835.1 696 63.1
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.4e-238 830.1 635 66.1
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 4.0e-238 828.6 748 56.7
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 1.2e-237 827.0 735 59.0
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 7.0e-235 817.8 660 63.2
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 1.2e-234 817.0 749 57.5
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 2.0e-229 799.7 759 56.3
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 2.0e-229 799.7 759 56.3
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 9.9e-229 797.3 749 56.5
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 2.8e-223 779.2 754 54.5
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 3.4e-221 772.3 725 56.1
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 1.7e-220 770.0 820 51.1
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 3.8e-212 742.3 525 70.9
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 3.8e-212 742.3 741 53.3
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.6e-210 736.9 753 52.5
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 6.2e-207 724.9 648 59.6
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.2e-204 716.5 756 53.0
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 4.9e-204 715.3 535 66.7
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 3.9e-201 705.7 743 51.0
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 2.1e-199 699.9 525 66.3
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 2.5e-195 686.4 712 52.1
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 3.0e-193 679.5 529 65.6
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 2.5e-187 659.8 533 61.4
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 6.3e-183 645.2 740 47.6
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 5.3e-174 615.5 755 47.8
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 2.2e-151 540.4 613 48.8
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.3e-143 514.6 389 68.4
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.5e-123 448.0 386 60.1
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 8.1e-114 415.6 347 60.8
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.5e-112 411.4 729 35.9
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 3.2e-102 377.1 473 47.1
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 2.3e-92 344.4 754 29.7
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.8e-84 318.2 227 69.6
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 7.4e-83 312.8 836 30.0
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 3.1e-73 280.8 216 64.8
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 4.1e-65 253.8 514 35.2
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 9.7e-51 206.1 221 53.4
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 1.1e-38 166.0 124 66.1
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 3.2e-38 164.5 194 48.5
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 3.1e-33 147.9 102 66.7
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 3.5e-32 144.4 151 50.3
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 6.1e-29 133.7 113 61.9
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.6e-27 128.3 229 38.0
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 3.4e-27 127.9 137 52.6
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 9.8e-27 126.3 93 69.9
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 6.6e-23 113.6 218 38.1
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 3.0e-20 104.8 81 66.7
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 4.0e-20 104.4 217 37.8
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 1.7e-18 99.0 222 38.3
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 1.7e-18 99.0 92 57.6
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 6.4e-18 97.1 93 52.7
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 4.6e-16 90.9 157 38.9
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 2.1e-13 82.0 65 64.6
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 3.1e-12 78.2 96 42.7
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.0e-11 75.5 66 57.6
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 4.1e-09 67.8 56 62.5
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.7e-07 62.4 65 47.7
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 1.7e-07 62.4 65 47.7
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 6.6e-07 60.5 64 46.9
FvH4_7g19080 Fragaria vesca HOM05D000254 ORTHO05D022695 1.1e-06 59.7 65 46.2
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 1.9e-06 58.9 80 45.0
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 4.3e-06 57.8 102 37.3


User provided reference genes

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