Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_8.g2889 Utricularia gibba HOM05D004696 ORTHO05D005645 3.0e-105 385.2 194 100.0
MSTRG.24614 Avicennia marina HOM05D004696 ORTHO05D005645 1.4e-65 253.4 193 65.3
Actinidia22921 Actinidia chinensis HOM05D004696 ORTHO05D005645 4.4e-64 248.4 185 68.1
Dinv18020 Davidia involucrata HOM05D004696 ORTHO05D005645 5.7e-64 248.1 197 67.5
Dinv29511 Davidia involucrata HOM05D004696 ORTHO05D005645 2.8e-63 245.7 197 66.0
Atru.chr4.3144 Acer truncatum HOM05D004696 ORTHO05D005645 3.7e-63 245.4 193 64.2
TAR629G2307 Trochodendron aralioides HOM05D004696 ORTHO05D005645 3.7e-63 245.4 185 68.1
Migut.N00002 Erythranthe guttata HOM05D004696 ORTHO05D005645 4.8e-63 245.0 188 69.1
vmacro08011 Vaccinium macrocarpon HOM05D004696 ORTHO05D005645 8.3e-63 244.2 210 63.3
CSS0007787 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 3.1e-62 242.3 190 65.8
SalBow2G0725 Salvia bowleyana HOM05D001196 ORTHO05D005911 5.4e-62 241.5 187 65.8
Lsat_1_v5_gn_1_39920 Lactuca sativa HOM05D004696 ORTHO05D005645 2.7e-61 239.2 196 63.3
Cfa015727 Carpinus fangiana HOM05D004696 ORTHO05D005645 3.5e-61 238.8 186 65.6
CiPaw.02G069300 Carya illinoinensis HOM05D004696 ORTHO05D005645 3.5e-61 238.8 196 64.3
Ah.16g105210 Amaranthus hybridus HOM05D004696 ORTHO05D005645 5.9e-61 238.0 197 59.9
Solyc05g053220.3 Solanum lycopersicum HOM05D004696 ORTHO05D005645 5.9e-61 238.0 195 63.1
Sopen05g031730 Solanum pennellii HOM05D004696 ORTHO05D005645 5.9e-61 238.0 195 63.1
Cpa.g.sc146.25 Carica papaya HOM05D004696 ORTHO05D005645 1.3e-60 236.9 198 63.1
Eucgr.B03956 Eucalyptus grandis HOM05D004696 ORTHO05D005645 1.3e-60 236.9 191 63.4
Ciclev10005920m.g Citrus clementina HOM05D004696 ORTHO05D005645 1.7e-60 236.5 189 64.0
PGSC0003DMG400027150 Solanum tuberosum HOM05D004696 ORTHO05D005645 1.7e-60 236.5 194 62.9
Haze_00771 Corylus avellana HOM05D004696 ORTHO05D005645 2.9e-60 235.7 186 64.5
Manes.03G211700 Manihot esculenta HOM05D004696 ORTHO05D005645 2.9e-60 235.7 185 63.8
CsaV3_6G008150 Cucumis sativus L. HOM05D004696 ORTHO05D005645 3.8e-60 235.3 186 62.9
HanXRQChr09g0238571 Helianthus annuus HOM05D004696 ORTHO05D005645 3.8e-60 235.3 196 61.2
Phvul.003G045400 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 3.8e-60 235.3 197 64.5
Manes.11G020900 Manihot esculenta HOM05D004696 ORTHO05D005645 5.0e-60 235.0 188 63.3
PGR031G3538 Punica granatum HOM05D004696 ORTHO05D005645 5.0e-60 235.0 192 63.5
VMungo0331G1167 Vigna mungo HOM05D004696 ORTHO05D005645 6.5e-60 234.6 197 62.4
Sc17g0002920 Simmondsia chinensis HOM05D004696 ORTHO05D005645 8.5e-60 234.2 200 59.5
TWI73G0566 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 1.5e-59 233.4 188 66.0
Glyma.11G024900 Glycine max HOM05D004696 ORTHO05D005645 1.9e-59 233.0 196 62.8
ECA220G0002 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.5e-59 232.6 172 64.5
Sed0019137 Sechium edule HOM05D004696 ORTHO05D005645 2.5e-59 232.6 199 61.3
QL06p014174 Quercus lobata HOM05D004696 ORTHO05D005645 3.2e-59 232.3 206 59.7
Glyma.01G218300 Glycine max HOM05D004696 ORTHO05D005645 4.2e-59 231.9 187 63.6
Ah.06g192450 Amaranthus hybridus HOM05D004696 ORTHO05D005645 7.2e-59 231.1 187 60.4
CAN.G305.38 Capsicum annuum HOM05D004696 ORTHO05D005645 7.2e-59 231.1 195 61.0
Phvul.010G140500 Phaseolus vulgaris HOM05D004696 ORTHO05D005645 1.2e-58 230.3 187 62.6
Lalb_Chr17g0338851 Lupinus albus HOM05D004696 ORTHO05D005645 1.6e-58 229.9 197 59.9
GSVIVG01017685001 Vitis vinifera HOM05D004696 ORTHO05D005645 1.6e-58 229.9 187 64.2
arahy.Tifrunner.gnm1.ann1.61U0KE Arachis hypogaea HOM05D004696 ORTHO05D005645 2.1e-58 229.6 197 60.4
Thecc.04G312600 Theobroma cacao HOM05D004696 ORTHO05D005645 4.7e-58 228.4 188 62.2
Duzib151G0078 Durio zibethinus HOM05D004696 ORTHO05D005645 8.0e-58 227.6 198 62.6
Lalb_Chr10g0096421 Lupinus albus HOM05D004696 ORTHO05D005645 8.0e-58 227.6 187 61.5
Lsat_1_v5_gn_6_92581 Lactuca sativa HOM05D004696 ORTHO05D005645 1.0e-57 227.3 185 62.2
SGA_v2.0_scaffold49G18399 Striga asiatica HOM05D004696 ORTHO05D005645 1.0e-57 227.3 183 64.5
Gohir.A02G058200 Gossypium hirsutum HOM05D004696 ORTHO05D005645 1.4e-57 226.9 202 59.4
Gorai.005G071900 Gossypium raimondii HOM05D004696 ORTHO05D005645 1.4e-57 226.9 202 59.4
Glyma.14G125600 Glycine max HOM05D004696 ORTHO05D005645 3.0e-57 225.7 194 61.3
Sabra02G0114900 Salix brachista HOM05D004696 ORTHO05D005645 3.0e-57 225.7 185 63.2
arahy.Tifrunner.gnm1.ann1.NQRV37 Arachis hypogaea HOM05D004696 ORTHO05D005645 6.8e-57 224.6 197 59.4
arahy.Tifrunner.gnm1.ann1.BY2PXQ Arachis hypogaea HOM05D004696 ORTHO05D005645 1.2e-56 223.8 197 58.9
Lj4g0004970 Lotus japonicus HOM05D004696 ORTHO05D005645 1.2e-56 223.8 197 59.9
Potri.010G002100 Populus trichocarpa HOM05D004696 ORTHO05D005645 1.2e-56 223.8 185 63.2
Lj2g0021207 Lotus japonicus HOM05D004696 ORTHO05D005645 2.0e-56 223.0 201 59.2
TWI09G0971 Tripterygium wilfordii HOM05D004696 ORTHO05D005645 2.6e-56 222.6 191 61.8
AUR62020507 Chenopodium quinoa HOM05D004696 ORTHO05D005645 3.4e-56 222.2 187 59.9
Potri.008G206400 Populus trichocarpa HOM05D004696 ORTHO05D005645 3.4e-56 222.2 185 62.7
Gohir.D02G064000 Gossypium hirsutum HOM05D004696 ORTHO05D005645 4.4e-56 221.9 202 58.4
EL10Ac4g08571 Beta vulgaris HOM05D004696 ORTHO05D005645 7.5e-56 221.1 184 60.9
MBI03_g01483_MAGBIO Magnolia biondii HOM05D004696 ORTHO05D005645 7.5e-56 221.1 173 64.2
MD07G1065600 Malus domestica HOM05D004696 ORTHO05D005645 2.2e-55 219.5 175 62.9
Aqoxy5G04183 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 2.8e-55 219.2 186 60.2
THA.LOC104827108 Tarenaya hassleriana HOM05D004696 ORTHO05D005645 2.8e-55 219.2 186 59.7
CANSAT78G0332 Cannabis sativa HOM05D004696 ORTHO05D005645 3.7e-55 218.8 188 61.7
MD13G1140700 Malus domestica HOM05D004696 ORTHO05D005645 3.7e-55 218.8 175 62.3
Aqoxy4G02417 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 8.3e-55 217.6 186 58.6
Prupe.1G105700 Prunus persica HOM05D004696 ORTHO05D005645 8.3e-55 217.6 189 60.3
Psat7g133720 Pisum sativum HOM05D004696 ORTHO05D005645 1.8e-54 216.5 201 56.7
CDE06G2579 Ceratophyllum demersum HOM05D005139 ORTHO05D006125 3.1e-54 215.7 156 67.9
Cc03_g00150 Coffea canephora HOM05D004696 ORTHO05D005645 3.1e-54 215.7 205 57.6
Cc00_g15640 Coffea canephora HOM05D004696 ORTHO05D005645 4.1e-54 215.3 157 69.4
Medtr5g081850 Medicago truncatula HOM05D004696 ORTHO05D005645 5.4e-54 214.9 190 58.4
Sabra02G0116500 Salix brachista HOM05D004696 ORTHO05D005645 1.2e-53 213.8 204 58.8
MD16G1136700 Malus domestica HOM05D004696 ORTHO05D005645 1.6e-53 213.4 172 62.8
Oeu022705.1 Olea europaea HOM05D004696 ORTHO05D005645 2.0e-53 213.0 167 64.7
Psat1g042400 Pisum sativum HOM05D004696 ORTHO05D005645 2.0e-53 213.0 188 56.9
Os02g0730500 Oryza sativa ssp. japonica HOM05D004696 ORTHO05D005645 2.7e-53 212.6 189 59.8
Sabra08G0150400 Salix brachista HOM05D004696 ORTHO05D005645 4.5e-53 211.8 205 57.1
RcHm_v2.0_Chr4g0427441 Rosa chinensis HOM05D004696 ORTHO05D005645 1.3e-52 210.3 185 60.5
FvH4_4g21490 Fragaria vesca HOM05D004696 ORTHO05D005645 2.3e-52 209.5 183 60.7
FAN12G0616 Fragaria x ananassa HOM05D004696 ORTHO05D005645 2.3e-52 209.5 183 60.7
AUR62015697 Chenopodium quinoa HOM05D004696 ORTHO05D005645 8.6e-52 207.6 156 64.7
PSO782G4648 Papaver somniferum HOM05D004696 ORTHO05D005645 1.5e-51 206.8 184 56.5
FAN07G1680 Fragaria x ananassa HOM05D004696 ORTHO05D005645 5.6e-51 204.9 185 59.5
PSO478G3068 Papaver somniferum HOM05D004696 ORTHO05D005645 7.3e-51 204.5 184 56.0
Oeu037627.2 Olea europaea HOM05D004696 ORTHO05D005645 9.5e-51 204.1 294 43.9
PSO063G5897 Papaver somniferum HOM05D004696 ORTHO05D005645 1.8e-49 199.9 183 56.3
PSO832G1751 Papaver somniferum HOM05D004696 ORTHO05D005645 1.8e-49 199.9 188 56.4
TPR.G8061 Trifolium pratense HOM05D004696 ORTHO05D005645 6.8e-49 198.0 189 51.3
Zm00001eb189970 Zea mays HOM05D004696 ORTHO05D005645 6.8e-49 198.0 190 56.3
Aqoxy3G02973 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.2e-48 197.2 154 64.3
Carub.0002s0865 Capsella rubella HOM05D004696 ORTHO05D005645 7.5e-48 194.5 170 58.2
Nitab4.5_0008086g0030 Nicotiana tabacum HOM05D004696 ORTHO05D005645 7.5e-48 194.5 193 54.9
AL6G41010 Arabidopsis lyrata HOM05D004696 ORTHO05D005645 1.3e-47 193.7 187 57.2
Hma1.2p1_2234F.1_g317690 Hydrangea macrophylla HOM05D004696 ORTHO05D000003 1.7e-47 193.4 257 47.1
AT5G30495 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 2.9e-47 192.6 187 56.7
BcaB04g19639 Brassica carinata HOM05D004696 ORTHO05D005645 8.3e-47 191.0 184 56.5
Sp2g19960 Schrenkiella parvula HOM05D004696 ORTHO05D005645 7.0e-46 188.0 187 55.1
Peaxi162Scf00164g00414 Petunia axillaris HOM05D004696 ORTHO05D005645 2.0e-45 186.4 193 55.4
SGA_v2.0_scaffold69G23291 Striga asiatica HOM05D004696 ORTHO05D005645 2.0e-45 186.4 183 56.3
CARHR185500 Cardamine hirsuta HOM05D004696 ORTHO05D005645 7.8e-45 184.5 183 54.6
Rhsim04G0248200 Rhododendron simsii HOM05D004696 ORTHO05D005645 1.0e-44 184.1 184 56.5
AT1G54770 Arabidopsis thaliana HOM05D004696 ORTHO05D005645 1.3e-44 183.7 193 52.8
BcaC04g23715 Brassica carinata HOM05D004696 ORTHO05D005645 1.3e-44 183.7 185 53.5
Lj6C700T16 Lonicera japonica HOM05D004696 ORTHO05D005645 1.5e-43 180.3 196 53.1
ClCG06G002080 Citrullus lanatus HOM05D004696 ORTHO05D005645 1.9e-43 179.9 189 52.9
Aa31LG2G12130 Aethionema arabicum HOM05D004696 ORTHO05D005645 2.5e-43 179.5 187 52.4
ECA248G3148 Erigeron canadensis HOM05D004696 ORTHO05D005645 2.5e-43 179.5 173 56.1
C09p05450 Brassica napus HOM05D004696 ORTHO05D005645 4.0e-41 172.2 185 51.4
SHI04008 Sapria himalayana HOM05D004696 ORTHO05D005645 4.0e-41 172.2 149 59.7
BolC9t53474H Brassica oleracea HOM05D004696 ORTHO05D005645 6.8e-41 171.4 185 51.4
BraA09t36143Z Brassica rapa HOM05D004696 ORTHO05D005645 6.8e-41 171.4 185 51.4
arahy.Tifrunner.gnm1.ann1.09FGJA Arachis hypogaea HOM05D004696 ORTHO05D005645 8.9e-41 171.0 188 50.5
Mapoly0084s0020 Marchantia polymorpha HOM05D004696 ORTHO05D005645 1.5e-40 170.2 177 52.0
A09p05040 Brassica napus HOM05D004696 ORTHO05D005645 2.0e-40 169.9 185 50.8
SEGI_16783 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 5.8e-40 168.3 129 68.2
SEGI_41631 Sequoiadendron giganteum HOM05D004696 ORTHO05D005645 9.8e-40 167.5 140 63.6
Thhalv10005420m.g Eutrema salsugineum HOM05D004696 ORTHO05D005645 1.3e-39 167.2 187 50.3
Pp3c7_450 Physcomitrium patens HOM05D004696 ORTHO05D005645 3.2e-38 162.5 139 59.0
Actinidia01063 Actinidia chinensis HOM05D004696 ORTHO05D005645 1.6e-37 160.2 183 49.7
SMO139G0013 Selaginella moellendorffii HOM05D004696 ORTHO05D005645 4.6e-37 158.7 152 52.6
Nitab4.5_0000745g0120 Nicotiana tabacum HOM05D004696 ORTHO05D005645 8.6e-36 154.5 193 46.6
Ca_05928_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 2.5e-35 152.9 188 43.6
Nn3g16891 Nelumbo nucifera HOM05D004696 ORTHO05D005645 2.5e-35 152.9 126 59.5
Ca_06214_v3 Cicer arietinum L. HOM05D004696 ORTHO05D005645 4.7e-34 148.7 186 43.0
MELO3C035238.2 Cucumis melo HOM05D004696 ORTHO05D005645 2.6e-32 142.9 157 47.8
CBR_g41139 Chara braunii HOM05D004696 ORTHO05D005645 1.4e-30 137.1 159 44.7
ECA149G0001 Erigeron canadensis HOM05D004696 ORTHO05D005645 1.6e-29 133.7 94 71.3
ATR1127G170 Amborella trichopoda HOM05D004696 ORTHO05D005645 5.1e-28 128.6 115 54.8
Lj4g0014561 Lotus japonicus HOM05D004696 ORTHO05D005645 5.1e-28 128.6 98 67.3
Lj4g0016234 Lotus japonicus HOM05D004696 ORTHO05D005645 5.6e-27 125.2 103 64.1
AagrBONN_evm.TU.Sc2ySwM_368.1627 Anthoceros agrestis HOM05D004696 ORTHO05D005645 1.2e-26 124.0 122 55.7
HPP92_006011 Vanilla planifolia HOM05D004696 ORTHO05D005645 4.0e-25 119.0 112 53.6
MCO05G434 Micromonas commoda HOM05D004696 ORTHO05D005645 2.2e-23 113.2 155 43.2
PRCOL_00000839 Prasinoderma coloniale HOM05D004696 ORTHO05D005645 1.9e-22 110.2 105 53.3
Zm00001eb253530 Zea mays HOM05D004696 ORTHO05D005645 2.4e-22 109.8 101 61.4
TAR371G0358 Trochodendron aralioides HOM05D004696 ORTHO05D005645 4.6e-21 105.5 90 64.4
Lj2g0010517 Lotus japonicus HOM05D004696 ORTHO05D005645 7.8e-21 104.8 149 43.6
RcHm_v2.0_Chr4g0427481 Rosa chinensis HOM05D004696 ORTHO05D005645 1.0e-20 104.4 92 55.4
Lj2g0009432 Lotus japonicus HOM05D004696 ORTHO05D005645 6.6e-20 101.7 90 62.2
CSS0046364 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 5.6e-19 98.6 94 51.1
CSS0022818 Camellia sinensis var. sinensis HOM05D004696 ORTHO05D005645 1.2e-18 97.4 93 50.5
COL.COLO4_34519 Corchorus olitorius HOM05D004696 ORTHO05D005645 4.7e-18 95.5 116 50.9
BcaC04g19932 Brassica carinata HOM05D004696 ORTHO05D005645 3.1e-17 92.8 112 45.5
Cfa024688 Carpinus fangiana HOM05D004696 ORTHO05D005645 4.0e-17 92.4 121 40.5
BolC9t57816H Brassica oleracea HOM05D004696 ORTHO05D005645 4.4e-16 89.0 112 45.5
Zm00001eb026470 Zea mays HOM05D004696 ORTHO05D021106 7.1e-14 81.6 65 61.5
Cre03.g194150 Chlamydomonas reinhardtii HOM05D004696 ORTHO05D005645 4.6e-13 79.0 169 33.7
Aqoxy5G04095 Aquilegia oxysepala HOM05D004696 ORTHO05D005645 1.7e-12 77.0 69 59.4
QL04p080373 Quercus lobata HOM05D000023 ORTHO05D000014 3.0e-12 76.3 45 80.0
Zm00001eb219180 Zea mays HOM05D004696 ORTHO05D005645 1.5e-11 73.9 65 58.5
BcaB05g22696 Brassica carinata HOM05D004696 ORTHO05D005645 4.3e-11 72.4 120 38.3
EL10Ac1g01076 Beta vulgaris HOM05D004696 ORTHO05D005645 2.1e-10 70.1 56 64.3
QL12p004065 Quercus lobata HOM05D004696 ORTHO05D005645 4.0e-09 65.9 66 57.6
Medtr7g074130 Medicago truncatula HOM05D004696 ORTHO05D005645 4.2e-06 55.8 61 50.8
QL04p074113 Quercus lobata HOM05D001335 ORTHO05D001184 9.3e-06 54.7 31 74.2


User provided reference genes

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