Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_76.g29089 Utricularia gibba HOM05D005813 ORTHO05D007310 7.3e-256 886.7 445 100.0
unitig_749.g14372 Utricularia gibba HOM05D005813 ORTHO05D007310 5.8e-229 797.3 398 100.0
Migut.B01633 Erythranthe guttata HOM05D005813 ORTHO05D007310 1.1e-174 617.1 398 76.4
MSTRG.17192 Avicennia marina HOM05D005813 ORTHO05D007310 7.7e-173 610.9 397 76.3
Cc02_g23900 Coffea canephora HOM05D005813 ORTHO05D007310 1.1e-171 607.1 401 73.8
Lj7A528T62 Lonicera japonica HOM05D005813 ORTHO05D007310 6.1e-170 601.3 400 74.2
Dinv43710 Davidia involucrata HOM05D005813 ORTHO05D007310 3.3e-168 595.5 399 73.9
Manes.05G045300 Manihot esculenta HOM05D005813 ORTHO05D007310 9.7e-168 594.0 400 75.0
CiPaw.02G167800 Carya illinoinensis HOM05D005813 ORTHO05D007310 1.7e-167 593.2 398 73.6
ClCG05G002290 Citrullus lanatus HOM05D005813 ORTHO05D007310 2.2e-167 592.8 398 72.6
TWI59G1428 Tripterygium wilfordii HOM05D005813 ORTHO05D007310 3.7e-167 592.0 400 73.0
Potri.014G069400 Populus trichocarpa HOM05D005813 ORTHO05D007310 1.1e-166 590.5 398 72.1
MELO3C006191.2 Cucumis melo HOM05D005813 ORTHO05D007310 3.1e-166 589.0 398 72.1
PGR031G3848 Punica granatum HOM05D005813 ORTHO05D007310 3.1e-166 589.0 399 72.4
QL08p052527 Quercus lobata HOM05D005813 ORTHO05D007310 9.1e-166 587.4 398 73.6
Cfa001724 Carpinus fangiana HOM05D005813 ORTHO05D007310 1.6e-165 586.6 418 71.1
CSS0030666 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 2.0e-165 586.3 398 73.4
CSS0042195 Camellia sinensis var. sinensis HOM05D005813 ORTHO05D007310 2.0e-165 586.3 398 73.4
Duzib138G0196 Durio zibethinus HOM05D005813 ORTHO05D007310 3.5e-165 585.5 397 72.3
Sabra02G0115400 Salix brachista HOM05D005813 ORTHO05D007310 5.9e-165 584.7 398 72.9
SalBow5G4545 Salvia bowleyana HOM05D005813 ORTHO05D007310 7.7e-165 584.3 398 73.9
SGA_v2.0_scaffold153G37009 Striga asiatica HOM05D005813 ORTHO05D007310 7.7e-165 584.3 398 73.4
Sabra02G0117100 Salix brachista HOM05D005813 ORTHO05D007310 2.2e-164 582.8 398 72.6
CiPaw.01G262200 Carya illinoinensis HOM05D005813 ORTHO05D007310 2.9e-164 582.4 398 72.6
CsaV3_3G009700 Cucumis sativus L. HOM05D005813 ORTHO05D007310 3.2e-163 578.9 398 70.9
Duzib133G0639 Durio zibethinus HOM05D005813 ORTHO05D007310 4.2e-163 578.6 398 71.1
arahy.Tifrunner.gnm1.ann1.4B5N4V Arachis hypogaea HOM05D005813 ORTHO05D007310 5.5e-163 578.2 401 69.8
Ca_11657_v3 Cicer arietinum L. HOM05D005813 ORTHO05D007310 9.4e-163 577.4 400 71.5
arahy.Tifrunner.gnm1.ann1.DKE7V3 Arachis hypogaea HOM05D005813 ORTHO05D007310 1.2e-162 577.0 401 69.6
Eucgr.D02453 Eucalyptus grandis HOM05D005813 ORTHO05D007310 1.2e-162 577.0 401 70.8
Sc02g0002610 Simmondsia chinensis HOM05D005813 ORTHO05D007310 1.6e-162 576.6 397 70.0
THA.LOC104817009 Tarenaya hassleriana HOM05D005813 ORTHO05D007310 2.7e-162 575.9 399 71.4
Ciclev10020183m.g Citrus clementina HOM05D005813 ORTHO05D007310 3.6e-162 575.5 400 71.5
Solyc01g091310.3 Solanum lycopersicum HOM05D005813 ORTHO05D007310 3.6e-162 575.5 400 70.0
Nitab4.5_0004917g0040 Nicotiana tabacum HOM05D005813 ORTHO05D007310 4.7e-162 575.1 401 71.1
Glyma.09G269300 Glycine max HOM05D005813 ORTHO05D007310 6.1e-162 574.7 398 71.1
Lj1g0017617 Lotus japonicus HOM05D005813 ORTHO05D007310 1.0e-161 573.9 398 71.4
Medtr7g074890 Medicago truncatula HOM05D005813 ORTHO05D007310 1.0e-161 573.9 400 71.8
Glyma.18G220700 Glycine max HOM05D005813 ORTHO05D007310 1.4e-161 573.5 397 72.3
TAR374G0529 Trochodendron aralioides HOM05D005813 ORTHO05D007310 1.8e-161 573.2 400 70.8
Lalb_Chr03g0039571 Lupinus albus HOM05D005813 ORTHO05D007310 2.3e-161 572.8 397 69.8
Haze_16813 Corylus avellana HOM05D005813 ORTHO05D007310 3.0e-161 572.4 399 71.7
Nn1g01240 Nelumbo nucifera HOM05D005813 ORTHO05D007310 4.0e-161 572.0 393 70.7
Lsat_1_v5_gn_7_7160 Lactuca sativa HOM05D005813 ORTHO05D007310 6.8e-161 571.2 400 73.0
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 6.8e-161 571.2 398 71.4
Sed0000354 Sechium edule HOM05D005813 ORTHO05D007310 1.2e-160 570.5 398 70.1
TPR.G29407 Trifolium pratense HOM05D005813 ORTHO05D007310 2.0e-160 569.7 400 70.5
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 3.4e-160 568.9 397 71.0
Nn4g26391 Nelumbo nucifera HOM05D005813 ORTHO05D007310 4.4e-160 568.5 395 70.4
Hund27345 Selenicereus undatus HOM05D005813 ORTHO05D007310 4.4e-160 568.5 419 67.1
MD02G1204700 Malus domestica HOM05D005813 ORTHO05D007310 7.5e-160 567.8 402 72.1
GSVIVG01027606001 Vitis vinifera HOM05D005813 ORTHO05D007310 9.8e-160 567.4 400 70.5
MBI04_g35272_MAGBIO Magnolia biondii HOM05D005813 ORTHO05D007310 2.8e-159 565.8 398 70.9
Oeu055488.1 Olea europaea HOM05D005813 ORTHO05D007310 1.8e-158 563.1 425 68.2
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.4e-158 562.8 399 69.9
Potri.002G148100 Populus trichocarpa HOM05D005813 ORTHO05D007310 3.1e-158 562.4 398 70.1
Phvul.008G076400 Phaseolus vulgaris HOM05D005813 ORTHO05D007310 4.1e-158 562.0 397 70.0
Prupe.2G145000 Prunus persica HOM05D005813 ORTHO05D007310 4.1e-158 562.0 398 70.6
Sopen01g037050 Solanum pennellii HOM05D005813 ORTHO05D007310 5.4e-158 561.6 401 69.6
Sp6g00150 Schrenkiella parvula HOM05D005813 ORTHO05D007310 1.6e-157 560.1 400 70.0
ATR0810G089 Amborella trichopoda HOM05D005813 ORTHO05D007310 3.5e-157 558.9 396 69.7
Sed0028100 Sechium edule HOM05D005813 ORTHO05D007310 1.3e-156 557.0 398 69.6
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 2.9e-156 555.8 399 69.2
BcaB01g02210 Brassica carinata HOM05D005813 ORTHO05D007310 3.8e-156 555.4 398 69.1
Ah.05g174210 Amaranthus hybridus HOM05D005813 ORTHO05D007310 6.6e-156 554.7 400 67.2
CANSAT56G4177 Cannabis sativa HOM05D005813 ORTHO05D007310 6.6e-156 554.7 399 68.7
AT4G00090 Arabidopsis thaliana HOM05D005813 ORTHO05D007310 8.6e-156 554.3 398 68.6
CARHR248130 Cardamine hirsuta HOM05D005813 ORTHO05D007310 8.6e-156 554.3 400 69.8
Cpa.g.sc18.111 Carica papaya HOM05D005813 ORTHO05D007310 8.6e-156 554.3 399 69.9
HanXRQChr04g0122421 Helianthus annuus HOM05D005813 ORTHO05D007310 8.6e-156 554.3 392 71.9
AL6G53420 Arabidopsis lyrata HOM05D005813 ORTHO05D007310 3.3e-155 552.4 398 68.6
Peaxi162Scf00013g03441 Petunia axillaris HOM05D005813 ORTHO05D007310 9.5e-155 550.8 399 69.9
AUR62004213 Chenopodium quinoa HOM05D005813 ORTHO05D007310 1.2e-154 550.4 399 66.2
Rhsim01G0147300 Rhododendron simsii HOM05D005813 ORTHO05D007310 1.2e-154 550.4 425 65.2
C09p00110 Brassica napus HOM05D005813 ORTHO05D007310 1.6e-154 550.1 398 68.6
BraA09t35685Z Brassica rapa HOM05D005813 ORTHO05D007310 1.6e-154 550.1 398 68.6
EL10Ac1g00888 Beta vulgaris HOM05D005813 ORTHO05D007310 2.8e-154 549.3 400 65.5
Carub.0006s3714 Capsella rubella HOM05D005813 ORTHO05D007310 2.8e-154 549.3 398 68.1
Thhalv10028676m.g Eutrema salsugineum HOM05D005813 ORTHO05D007310 3.6e-154 548.9 398 68.3
Gohir.A08G134600 Gossypium hirsutum HOM05D005813 ORTHO05D007310 3.0e-153 545.8 398 67.8
BcaC04g24202 Brassica carinata HOM05D005813 ORTHO05D007310 4.0e-153 545.4 398 67.8
BolC9t52946H Brassica oleracea HOM05D005813 ORTHO05D007310 4.0e-153 545.4 398 67.8
Gohir.D08G155500 Gossypium hirsutum HOM05D005813 ORTHO05D007310 7.5e-152 541.2 398 67.6
Gorai.004G161700 Gossypium raimondii HOM05D005813 ORTHO05D007310 7.5e-152 541.2 398 67.6
FAN10G1195 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.7e-151 540.0 400 68.2
PSO478G4467 Papaver somniferum HOM05D005813 ORTHO05D007310 1.1e-150 537.3 394 67.5
Atru.chr5.306 Acer truncatum HOM05D005813 ORTHO05D007310 2.4e-150 536.2 400 68.8
FvH4_7g11840 Fragaria vesca HOM05D005813 ORTHO05D007310 2.4e-150 536.2 398 67.6
FAN06G0614 Fragaria x ananassa HOM05D005813 ORTHO05D007310 2.4e-150 536.2 398 67.6
PSO782G1692 Papaver somniferum HOM05D005813 ORTHO05D007310 3.1e-150 535.8 394 67.5
FAN01G0479 Fragaria x ananassa HOM05D005813 ORTHO05D007310 4.1e-150 535.4 398 67.6
FAN10G2798 Fragaria x ananassa HOM05D005813 ORTHO05D007310 1.2e-149 533.9 398 67.3
Aa31LG5G9310 Aethionema arabicum HOM05D005813 ORTHO05D007310 2.0e-149 533.1 425 63.8
FAN03G1318 Fragaria x ananassa HOM05D005813 ORTHO05D007310 2.7e-149 532.7 402 66.4
Gorai.004G040800 Gossypium raimondii HOM05D005813 ORTHO05D007310 2.7e-149 532.7 445 62.0
Aqoxy7G00631 Aquilegia oxysepala HOM05D005813 ORTHO05D007310 3.5e-149 532.3 397 66.5
MD07G1121300 Malus domestica HOM05D005813 ORTHO05D007310 3.5e-149 532.3 400 68.2
FAN06G1564 Fragaria x ananassa HOM05D005813 ORTHO05D007310 4.3e-147 525.4 410 65.4
RcHm_v2.0_Chr1g0350521 Rosa chinensis HOM05D005813 ORTHO05D007310 1.0e-145 520.8 398 66.8
CDE09G1050 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 6.8e-145 518.1 389 66.1
vmacro21010 Vaccinium macrocarpon HOM05D005813 ORTHO05D007310 8.9e-145 517.7 409 64.8
CDE11G1084 Ceratophyllum demersum HOM05D005813 ORTHO05D007310 7.5e-144 514.6 389 65.3
Nitab4.5_0000457g0240 Nicotiana tabacum HOM05D005813 ORTHO05D007310 1.7e-140 503.4 341 73.0
SEGI_07293 Sequoiadendron giganteum HOM05D005813 ORTHO05D007310 1.4e-137 493.8 392 62.2
Psat3g115920 Pisum sativum HOM05D005813 ORTHO05D007310 3.1e-137 492.7 400 64.2
Actinidia12685 Actinidia chinensis HOM05D005813 ORTHO05D007310 1.2e-136 490.7 398 65.3
AUR62013635 Chenopodium quinoa HOM05D005813 ORTHO05D007310 1.7e-135 486.9 410 60.0
Zm00001eb065090 Zea mays HOM05D005813 ORTHO05D007310 2.1e-130 469.9 397 60.7
HPP92_003519 Vanilla planifolia HOM05D005813 ORTHO05D007310 5.2e-129 465.3 396 59.3
Mapoly0037s0016 Marchantia polymorpha HOM05D005813 ORTHO05D007310 1.8e-121 440.3 392 56.6
COL.COLO4_12543 Corchorus olitorius HOM05D005813 ORTHO05D007310 3.1e-121 439.5 398 58.3
AagrBONN_evm.TU.Sc2ySwM_117.33 Anthoceros agrestis HOM05D005813 ORTHO05D007310 3.9e-116 422.5 424 55.2
DCAR_015903 Daucus carota HOM05D005813 ORTHO05D007310 8.1e-114 414.8 316 65.8
Psat3g202640 Pisum sativum HOM05D005813 ORTHO05D007310 3.2e-110 402.9 296 68.2
SHI01708 Sapria himalayana HOM05D005813 ORTHO05D007310 3.2e-110 402.9 395 53.2
Pp3c19_7620 Physcomitrium patens HOM05D005813 ORTHO05D007310 4.6e-109 399.1 392 53.8
PGSC0003DMG400012776 Solanum tuberosum HOM05D005813 ORTHO05D007310 1.4e-105 387.5 232 78.9
SMO367G0685 Selaginella moellendorffii HOM05D005813 ORTHO05D007310 2.6e-104 383.3 322 58.7
A09p00750 Brassica napus HOM05D005813 ORTHO05D007310 8.4e-103 378.3 239 74.5
CBR_g23070 Chara braunii HOM05D005813 ORTHO05D007310 1.6e-101 374.0 378 51.1
CBR_g21297 Chara braunii HOM05D005813 ORTHO05D007310 4.8e-98 362.5 349 52.7
PSO170G3521 Papaver somniferum HOM05D005813 ORTHO05D007310 6.9e-97 358.6 328 56.1
PSO782G5041 Papaver somniferum HOM05D005813 ORTHO05D007310 1.0e-92 344.7 289 60.6
PSO675G1684 Papaver somniferum HOM05D005813 ORTHO05D007310 6.1e-69 265.8 203 63.1
Actinidia33466 Actinidia chinensis HOM05D005813 ORTHO05D007310 3.9e-60 236.5 139 81.3
PSO478G0826 Papaver somniferum HOM05D005813 ORTHO05D007310 1.3e-47 194.9 134 69.4
Cre02.g102450 Chlamydomonas reinhardtii HOM05D005813 ORTHO05D007310 4.7e-45 186.4 321 36.1
MCO05G082 Micromonas commoda HOM05D005813 ORTHO05D007310 2.3e-39 167.5 336 35.1
PSO478G4170 Papaver somniferum HOM05D005813 ORTHO05D007310 4.7e-21 106.7 103 53.4
MELO3C031411.2 Cucumis melo HOM05D000544 ORTHO05D169468 7.8e-08 62.8 37 75.7
Lj1g0012756 Lotus japonicus HOM05D003006 ORTHO05D003438 5.1e-07 60.1 291 23.4
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 8.6e-07 59.3 37 70.3
Os06g0644600 Oryza sativa ssp. japonica HOM05D000002 ORTHO05D006339 1.9e-06 58.2 155 27.7
QL02p028509 Quercus lobata HOM05D000645 ORTHO05D000494 3.3e-06 57.4 274 23.4
MELO3C026625.2 Cucumis melo HOM05D003006 ORTHO05D003438 4.3e-06 57.0 293 21.8
Hma1.2p1_2051F.1_g312550 Hydrangea macrophylla HOM05D006183 ORTHO05D007844 4.3e-06 57.0 332 24.7
CiPaw.04G168700 Carya illinoinensis HOM05D003006 ORTHO05D003438 5.6e-06 56.6 292 21.6
Gorai.004G278600 Gossypium raimondii HOM05D003006 ORTHO05D003438 5.6e-06 56.6 279 21.9
Zm00001eb386980 Zea mays HOM05D000002 ORTHO05D006339 5.6e-06 56.6 149 26.8
QL02p087078 Quercus lobata HOM05D003006 ORTHO05D003438 7.3e-06 56.2 292 21.6
COL.COLO4_34985 Corchorus olitorius HOM05D003006 ORTHO05D003438 9.6e-06 55.8 289 21.1
Phvul.003G160500 Phaseolus vulgaris HOM05D003006 ORTHO05D003438 9.6e-06 55.8 278 21.9
Sc08g0006880 Simmondsia chinensis HOM05D003006 ORTHO05D003438 9.6e-06 55.8 294 21.4
VMungo1215G1909 Vigna mungo HOM05D003006 ORTHO05D003438 9.6e-06 55.8 278 21.9


User provided reference genes

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