Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_750.g28458 Utricularia gibba HOM05D005071 ORTHO05D006069 3.1e-187 658.3 324 100.0
SGA_v2.0_scaffold25G10767 Striga asiatica HOM05D005071 ORTHO05D006069 1.8e-123 446.4 384 59.6
MSTRG.23199 Avicennia marina HOM05D005071 ORTHO05D006069 1.3e-121 440.3 386 59.8
Thecc.03G069100 Theobroma cacao HOM05D005071 ORTHO05D006069 1.9e-120 436.4 384 58.6
SalBow5G4817 Salvia bowleyana HOM05D005071 ORTHO05D006069 3.2e-120 435.6 337 64.4
MBI19_g46696_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 9.4e-120 434.1 324 65.4
Duzib068G1262 Durio zibethinus HOM05D005071 ORTHO05D006069 1.6e-119 433.3 353 61.2
Atru.chr9.1568 Acer truncatum HOM05D005071 ORTHO05D006069 6.7e-118 427.9 374 58.3
Cpa.g.sc7.143 Carica papaya HOM05D005071 ORTHO05D006069 8.8e-118 427.6 343 62.1
MBI19_g02947_MAGBIO Magnolia biondii HOM05D005071 ORTHO05D006069 2.6e-117 426.0 306 68.0
Nitab4.5_0003066g0040 Nicotiana tabacum HOM05D005071 ORTHO05D006069 3.3e-117 425.6 346 61.0
Migut.O00239 Erythranthe guttata HOM05D005071 ORTHO05D006069 7.4e-117 424.5 386 57.3
Peaxi162Scf00171g00530 Petunia axillaris HOM05D005071 ORTHO05D006069 3.7e-116 422.2 319 63.3
Cc04_g09040 Coffea canephora HOM05D005071 ORTHO05D006069 8.2e-116 421.0 373 58.7
Peaxi162Scf00171g00533 Petunia axillaris HOM05D005071 ORTHO05D006069 8.2e-116 421.0 316 65.8
Potri.012G038900 Populus trichocarpa HOM05D005071 ORTHO05D006069 1.8e-115 419.9 374 57.8
TWI81G0487 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 2.4e-115 419.5 374 57.0
GSVIVG01000389001 Vitis vinifera HOM05D005071 ORTHO05D006069 4.1e-115 418.7 375 56.0
Sopen03g028930 Solanum pennellii HOM05D005071 ORTHO05D006069 2.6e-114 416.0 384 55.2
MD14G1242800 Malus domestica HOM05D005071 ORTHO05D006069 5.9e-114 414.8 372 56.7
Solyc03g098230.3 Solanum lycopersicum HOM05D005071 ORTHO05D006069 7.7e-114 414.5 384 55.2
Hma1.2p1_0493F.1_g165090 Hydrangea macrophylla HOM05D005071 ORTHO05D006069 1.0e-113 414.1 372 56.2
Peaxi162Scf00171g00532 Petunia axillaris HOM05D005071 ORTHO05D006069 1.7e-113 413.3 320 63.1
Dinv06025 Davidia involucrata HOM05D005071 ORTHO05D006069 2.9e-113 412.5 372 56.5
PGSC0003DMG400031041 Solanum tuberosum HOM05D005071 ORTHO05D006069 2.9e-113 412.5 384 54.7
CiPaw.16G099900 Carya illinoinensis HOM05D005071 ORTHO05D006069 3.8e-113 412.1 378 56.1
CAN.G637.11 Capsicum annuum HOM05D005071 ORTHO05D006069 6.5e-113 411.4 384 55.2
Lalb_Chr09g0330201 Lupinus albus HOM05D005071 ORTHO05D006069 8.5e-113 411.0 372 56.2
FvH4_5g18030 Fragaria vesca HOM05D005071 ORTHO05D006069 1.9e-112 409.8 378 55.8
EL10Ac8g19579 Beta vulgaris HOM05D005071 ORTHO05D006069 2.5e-112 409.5 360 56.9
Eucgr.H00596 Eucalyptus grandis HOM05D005071 ORTHO05D006069 3.2e-112 409.1 374 55.9
Oeu038408.4 Olea europaea HOM05D005071 ORTHO05D006069 4.2e-112 408.7 441 50.8
PGR083G1095 Punica granatum HOM05D005071 ORTHO05D006069 7.2e-112 407.9 374 56.1
Phvul.002G332800 Phaseolus vulgaris HOM05D005071 ORTHO05D006069 1.2e-111 407.1 385 54.8
FAN08G1527 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.6e-111 406.8 385 54.8
Lsat_1_v5_gn_0_10481 Lactuca sativa HOM05D005071 ORTHO05D006069 2.7e-111 406.0 378 54.0
CsaV3_1G005050 Cucumis sativus L. HOM05D005071 ORTHO05D006069 4.7e-111 405.2 375 54.7
FAN18G3456 Fragaria x ananassa HOM05D005071 ORTHO05D006069 4.7e-111 405.2 384 54.4
MELO3C001942.2 Cucumis melo HOM05D005071 ORTHO05D006069 8.0e-111 404.4 375 54.7
Sabra12G0027400 Salix brachista HOM05D005071 ORTHO05D006069 1.4e-110 403.7 418 52.2
FAN13G1354 Fragaria x ananassa HOM05D005071 ORTHO05D006069 2.3e-110 402.9 377 55.4
LjContig00484g0022264 Lotus japonicus HOM05D005071 ORTHO05D006069 2.3e-110 402.9 381 53.8
Cfa020677 Carpinus fangiana HOM05D005071 ORTHO05D006069 4.0e-110 402.1 342 59.4
Gohir.A11G001600 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.2e-109 400.6 385 54.8
TAR622G0642 Trochodendron aralioides HOM05D005071 ORTHO05D006069 1.2e-109 400.6 375 56.0
Sed0005435 Sechium edule HOM05D005071 ORTHO05D006069 1.5e-109 400.2 374 55.1
TPR.G1402 Trifolium pratense HOM05D005071 ORTHO05D006069 2.6e-109 399.4 376 53.7
arahy.Tifrunner.gnm1.ann1.ESBK1T Arachis hypogaea HOM05D005071 ORTHO05D006069 4.4e-109 398.7 400 52.2
Gorai.007G002100 Gossypium raimondii HOM05D005071 ORTHO05D006069 4.4e-109 398.7 385 54.5
arahy.Tifrunner.gnm1.ann1.ZJN9EZ Arachis hypogaea HOM05D005071 ORTHO05D006069 7.5e-109 397.9 368 54.9
ECA232G0859 Erigeron canadensis HOM05D005071 ORTHO05D006069 7.5e-109 397.9 374 53.7
Medtr8g107670 Medicago truncatula HOM05D005071 ORTHO05D006069 1.3e-108 397.1 374 53.5
TWI81G0721 Tripterygium wilfordii HOM05D005071 ORTHO05D006069 1.7e-108 396.7 363 55.6
Sed0017671 Sechium edule HOM05D005071 ORTHO05D006069 4.8e-108 395.2 321 60.4
Gohir.D11G001200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 8.3e-108 394.4 385 53.8
ATR0598G263 Amborella trichopoda HOM05D005071 ORTHO05D006069 1.8e-107 393.3 370 53.8
Os02g0773300 Oryza sativa ssp. japonica HOM05D005071 ORTHO05D006069 1.8e-107 393.3 371 53.4
Zm00001eb256470 Zea mays HOM05D005071 ORTHO05D006069 3.1e-107 392.5 372 54.0
Actinidia06302 Actinidia chinensis HOM05D005071 ORTHO05D006069 5.3e-107 391.7 369 55.0
Aqoxy3G01487 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 7.0e-107 391.3 399 51.6
HanXRQChr16g0503311 Helianthus annuus HOM05D005071 ORTHO05D006069 1.2e-106 390.6 386 52.6
Psat7g000520 Pisum sativum HOM05D005071 ORTHO05D006069 1.2e-106 390.6 397 50.4
Actinidia17702 Actinidia chinensis HOM05D005071 ORTHO05D006069 1.6e-106 390.2 373 54.7
CANSAT80G1805 Cannabis sativa HOM05D005071 ORTHO05D006069 2.0e-106 389.8 372 54.0
RcHm_v2.0_Chr7g0177581 Rosa chinensis HOM05D005071 ORTHO05D006069 2.0e-106 389.8 377 54.1
CSS0029252 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 2.7e-106 389.4 373 54.2
Lj5C165T19 Lonicera japonica HOM05D005071 ORTHO05D006069 2.7e-106 389.4 377 54.1
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 5.9e-106 388.3 374 52.9
Nitab4.5_0001180g0110 Nicotiana tabacum HOM05D005071 ORTHO05D006069 1.0e-105 387.5 346 56.4
Sc24g0002670 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.7e-105 386.7 373 53.6
HPP92_009318 Vanilla planifolia HOM05D005071 ORTHO05D006069 8.5e-105 384.4 370 53.8
VMungo0251G2121 Vigna mungo HOM05D005071 ORTHO05D006069 1.1e-104 384.0 385 52.2
FAN04G0665 Fragaria x ananassa HOM05D005071 ORTHO05D006069 1.2e-103 380.6 390 53.1
Rhsim08G0124200 Rhododendron simsii HOM05D005071 ORTHO05D006069 1.6e-103 380.2 434 48.4
SalBow5G0201 Salvia bowleyana HOM05D005071 ORTHO05D006069 4.7e-103 378.6 337 58.2
AUR62038575 Chenopodium quinoa HOM05D005071 ORTHO05D006069 6.1e-103 378.3 402 49.5
CARHR038040 Cardamine hirsuta HOM05D005071 ORTHO05D006069 1.4e-102 377.1 372 51.6
Sp1g35370 Schrenkiella parvula HOM05D005071 ORTHO05D006069 1.8e-102 376.7 409 48.4
AT1G48420 Arabidopsis thaliana HOM05D005071 ORTHO05D006069 8.8e-102 374.4 372 52.2
THA.LOC104820332 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 8.8e-102 374.4 372 52.4
BcaC08g43037 Brassica carinata HOM05D005071 ORTHO05D006069 3.4e-101 372.5 372 52.2
C06p02970 Brassica napus HOM05D005071 ORTHO05D006069 1.3e-100 370.5 372 51.9
BolC6t35420H Brassica oleracea HOM05D005071 ORTHO05D006069 1.3e-100 370.5 372 51.9
Aa31LG10G5350 Aethionema arabicum HOM05D005071 ORTHO05D006069 2.8e-100 369.4 372 50.8
THA.LOC104809825 Tarenaya hassleriana HOM05D005071 ORTHO05D006069 1.8e-99 366.7 370 51.4
PSO063G6091 Papaver somniferum HOM05D005071 ORTHO05D006069 3.1e-99 365.9 375 51.7
PSO782G2673 Papaver somniferum HOM05D005071 ORTHO05D006069 5.4e-99 365.2 375 51.7
Thhalv10011539m.g Eutrema salsugineum HOM05D005071 ORTHO05D006069 9.1e-99 364.4 372 50.8
Aqoxy3G04133 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 6.6e-97 358.2 374 50.3
AUR62042043 Chenopodium quinoa HOM05D005071 ORTHO05D006069 1.5e-96 357.1 369 50.7
Glyma.05G248600 Glycine max HOM05D005071 ORTHO05D006069 2.5e-96 356.3 374 50.8
Pp3c15_20550 Physcomitrium patens HOM05D005071 ORTHO05D006069 1.8e-94 350.1 374 49.7
Carub.0001s3754 Capsella rubella HOM05D005071 ORTHO05D006069 3.0e-94 349.4 372 50.0
Sc24g0002660 Simmondsia chinensis HOM05D005071 ORTHO05D006069 1.2e-93 347.4 373 49.9
AL1G55050 Arabidopsis lyrata HOM05D005071 ORTHO05D006069 3.4e-93 345.9 372 49.2
BcaB07g33760 Brassica carinata HOM05D005071 ORTHO05D006069 1.7e-92 343.6 372 49.5
A06p04490 Brassica napus HOM05D005071 ORTHO05D006069 1.1e-91 340.9 372 48.9
BraA06t23653Z Brassica rapa HOM05D005071 ORTHO05D006069 1.1e-91 340.9 372 48.9
Ciclev10024301m.g Citrus clementina HOM05D005071 ORTHO05D006069 1.1e-88 330.9 374 48.4
DCAR_013703 Daucus carota HOM05D005071 ORTHO05D006069 1.5e-88 330.5 284 59.9
Haze_18981 Corylus avellana HOM05D005071 ORTHO05D006069 4.3e-88 328.9 616 35.2
CiPaw.16G100100 Carya illinoinensis HOM05D005071 ORTHO05D006069 1.8e-86 323.6 316 54.7
SMO364G0181 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 1.8e-86 323.6 355 49.3
CDE11G0073 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.0e-85 320.1 356 47.8
Aqoxy3G04132 Aquilegia oxysepala HOM05D005071 ORTHO05D006069 1.4e-83 313.9 369 45.3
Prupe.5G240500 Prunus persica HOM05D005071 ORTHO05D006069 7.0e-83 311.6 316 53.8
CDE05G0597 Ceratophyllum demersum HOM05D005071 ORTHO05D006069 2.7e-82 309.7 316 51.9
Nn4g24682 Nelumbo nucifera HOM05D005071 ORTHO05D006069 3.9e-81 305.8 197 72.6
Mapoly0080s0004 Marchantia polymorpha HOM05D005071 ORTHO05D006069 2.5e-80 303.1 354 44.9
Manes.06G000700 Manihot esculenta HOM05D005071 ORTHO05D006069 4.3e-80 302.4 308 52.3
MD06G1235700 Malus domestica HOM05D005071 ORTHO05D006069 1.4e-78 297.4 398 43.0
vmacro17736 Vaccinium macrocarpon HOM05D005071 ORTHO05D006069 1.8e-78 297.0 179 77.7
QL10p032921 Quercus lobata HOM05D005071 ORTHO05D006069 4.0e-78 295.8 175 78.9
CSS0042250 Camellia sinensis var. sinensis HOM05D005071 ORTHO05D006069 5.8e-77 292.0 195 70.3
Gohir.D06G220200 Gossypium hirsutum HOM05D005071 ORTHO05D006069 1.1e-72 277.7 207 66.2
Haze_18975 Corylus avellana HOM05D000565 ORTHO05D006069 2.1e-71 273.5 171 76.0
COL.COLO4_33012 Corchorus olitorius HOM05D005071 ORTHO05D006069 2.8e-71 273.1 154 82.5
MCO03G464 Micromonas commoda HOM05D005071 ORTHO05D006069 1.5e-69 267.3 343 43.4
Hund22334 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.3e-68 264.2 153 79.7
Nitab4.5_0000936g0010 Nicotiana tabacum HOM05D005071 ORTHO05D006069 4.1e-67 259.2 177 69.5
Hund22332 Selenicereus undatus HOM05D005071 ORTHO05D006069 6.0e-66 255.4 147 81.6
Cre07.g319320 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.7e-65 253.8 389 38.3
Cre07.g319400 Chlamydomonas reinhardtii HOM05D005071 ORTHO05D006069 1.7e-65 253.8 389 38.3
SEGI_33957 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 1.7e-60 237.3 175 64.0
QL10p032932 Quercus lobata HOM05D005071 ORTHO05D006069 9.3e-43 178.3 100 78.0
QL10p033020 Quercus lobata HOM05D005071 ORTHO05D006069 2.7e-42 176.8 100 77.0
Dinv17781 Davidia involucrata HOM05D005071 ORTHO05D006069 1.1e-38 164.9 101 72.3
SEGI_13462 Sequoiadendron giganteum HOM05D005071 ORTHO05D006069 1.4e-27 127.9 94 59.6
Glyma.08G057251 Glycine max HOM05D005071 ORTHO05D006069 7.4e-24 115.5 75 65.3
Prupe.8G055600 Prunus persica HOM05D005071 ORTHO05D006069 3.7e-23 113.2 104 53.8
Pp3s30_410 Physcomitrium patens HOM05D005071 ORTHO05D006069 2.1e-18 97.4 312 27.2
MD06G1235800 Malus domestica HOM05D005071 ORTHO05D006069 5.1e-17 92.8 131 42.7
Cfa025391 Carpinus fangiana HOM05D005071 ORTHO05D006069 2.9e-12 77.0 203 33.5
GSVIVG01012590001 Vitis vinifera HOM05D005071 ORTHO05D006069 3.8e-12 76.6 52 67.3
Cre01.g031850 Chlamydomonas reinhardtii HOM05D006855 ORTHO05D008695 2.5e-11 73.9 100 44.0
SMO364G0565 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 4.2e-11 73.2 122 45.1
CSS0027349 Camellia sinensis var. sinensis HOM05D006855 ORTHO05D008695 1.6e-10 71.2 210 27.6
PRCOL_00006696 Prasinoderma coloniale HOM05D005071 ORTHO05D006069 3.6e-10 70.1 63 44.4
Os01g0695600 Oryza sativa ssp. japonica HOM05D006855 ORTHO05D008695 2.3e-09 67.4 257 27.2
Nitab4.5_0000718g0180 Nicotiana tabacum HOM05D006855 ORTHO05D008695 3.0e-09 67.0 281 25.6
SMO112G0110 Selaginella moellendorffii HOM05D005071 ORTHO05D006069 3.9e-09 66.6 164 34.8
Cfa024692 Carpinus fangiana HOM05D005071 ORTHO05D006069 6.7e-09 65.9 155 32.3
Eucgr.H02451 Eucalyptus grandis HOM05D006855 ORTHO05D008695 4.8e-07 59.7 142 31.7
Hund22342 Selenicereus undatus HOM05D005071 ORTHO05D006069 8.2e-07 58.9 53 54.7
Hund29997 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.1e-06 58.5 33 84.8
Hund29998 Selenicereus undatus HOM05D005071 ORTHO05D006069 1.1e-06 58.5 33 84.8
Mapoly0058s0079 Marchantia polymorpha HOM05D006855 ORTHO05D008695 1.4e-06 58.2 114 35.1
SEGI_15055 Sequoiadendron giganteum HOM05D006855 ORTHO05D008695 9.1e-06 55.5 101 36.6


User provided reference genes

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