Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 3.0e-196 688.3 346 100.0
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.2e-149 533.5 321 79.4
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 7.9e-149 530.8 320 78.8
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.0e-148 530.4 320 79.1
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 1.0e-148 530.4 320 79.1
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 2.3e-148 529.3 320 78.4
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 6.7e-148 527.7 320 79.4
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 8.7e-148 527.3 332 76.8
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 1.5e-147 526.6 334 76.3
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 9.6e-147 523.9 321 79.1
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 2.1e-146 522.7 321 78.2
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 3.7e-146 521.9 320 78.4
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 4.8e-146 521.5 320 76.6
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 1.1e-145 520.4 319 77.4
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 1.1e-145 520.4 320 77.2
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 1.4e-145 520.0 320 78.1
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 1.4e-145 520.0 321 77.3
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.4e-145 520.0 324 76.9
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.8e-145 519.6 324 76.9
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 3.1e-145 518.8 325 76.9
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 3.1e-145 518.8 320 77.8
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 3.1e-145 518.8 320 77.5
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 3.1e-145 518.8 320 77.8
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 1.5e-144 516.5 320 77.8
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.5e-144 516.5 320 78.1
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 2.6e-144 515.8 319 77.1
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 5.8e-144 514.6 322 77.0
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 5.8e-144 514.6 316 77.2
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 1.3e-143 513.5 320 76.6
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.9e-143 512.3 320 77.5
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 4.9e-143 511.5 336 74.1
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 6.5e-143 511.1 324 76.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 8.4e-143 510.8 321 76.3
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 1.9e-142 509.6 321 75.1
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 2.5e-142 509.2 320 76.9
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.2e-142 508.8 320 76.6
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 4.2e-142 508.4 320 76.6
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 5.5e-142 508.1 321 75.1
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 7.1e-142 507.7 320 76.2
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 7.1e-142 507.7 320 76.6
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 7.1e-142 507.7 322 75.5
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 9.3e-142 507.3 321 74.8
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.6e-141 506.5 321 75.4
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 1.6e-141 506.5 315 77.5
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 2.7e-141 505.8 320 75.9
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 3.5e-141 505.4 320 75.9
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 4.6e-141 505.0 322 75.2
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 6.0e-141 504.6 320 75.6
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 6.0e-141 504.6 371 69.0
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 7.9e-141 504.2 320 75.3
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.9e-141 504.2 321 74.5
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 1.0e-140 503.8 320 75.0
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.0e-140 503.8 320 75.3
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 1.3e-140 503.4 320 75.6
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 2.3e-140 502.7 321 73.8
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 2.3e-140 502.7 320 75.3
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 2.3e-140 502.7 320 75.3
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 2.3e-140 502.7 322 74.8
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 3.9e-140 501.9 317 75.7
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 3.9e-140 501.9 320 75.0
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 6.7e-140 501.1 320 76.2
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 8.7e-140 500.7 321 74.5
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.9e-139 499.6 334 72.2
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 2.5e-139 499.2 327 75.2
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 2.5e-139 499.2 320 74.1
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 2.5e-139 499.2 318 74.8
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 2.5e-139 499.2 363 67.2
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 7.4e-139 497.7 323 75.2
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.3e-138 496.9 334 71.9
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 1.3e-138 496.9 322 75.8
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 1.3e-138 496.9 338 72.5
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 2.2e-138 496.1 320 74.7
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 2.8e-138 495.7 322 73.9
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 2.8e-138 495.7 325 73.8
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 4.8e-138 495.0 318 74.8
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 6.3e-138 494.6 321 75.1
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 1.4e-137 493.4 315 74.9
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.8e-137 493.0 325 72.3
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 5.3e-137 491.5 329 73.3
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 5.3e-137 491.5 360 67.8
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 5.3e-137 491.5 319 75.5
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 4.5e-136 488.4 312 75.0
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 5.0e-135 485.0 358 67.6
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 1.4e-134 483.4 320 73.1
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 2.3e-132 476.1 387 64.1
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 6.7e-132 474.6 312 73.4
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 8.8e-132 474.2 320 72.2
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 8.8e-132 474.2 312 73.4
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.5e-131 473.4 304 75.0
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 7.4e-131 471.1 307 74.6
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 1.4e-129 466.8 320 70.3
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 4.1e-129 465.3 333 70.0
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 3.8e-127 458.8 335 67.2
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 5.5e-126 454.9 350 64.9
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.0e-124 450.7 318 69.8
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 6.7e-124 448.0 320 70.0
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 9.1e-121 437.6 329 66.3
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 7.7e-120 434.5 305 69.5
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 7.7e-120 434.5 250 82.4
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 6.1e-117 424.9 250 80.0
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 5.9e-112 408.3 250 75.6
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 1.6e-109 400.2 243 76.1
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 8.0e-109 397.9 249 76.3
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.3e-103 380.6 244 73.4
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 2.5e-102 376.3 328 61.3
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 2.1e-101 373.2 294 63.9
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 1.4e-100 370.5 311 59.8
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 2.6e-99 366.3 318 59.4
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 1.7e-98 363.6 358 54.7
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 8.6e-95 351.3 314 56.7
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 2.0e-88 330.1 203 77.3
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 4.7e-77 292.4 232 62.5
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 8.3e-74 281.6 317 46.7
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 4.0e-68 262.7 267 49.4
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 1.2e-67 261.2 175 69.7
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 2.1e-64 250.4 310 46.5
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 6.0e-64 248.8 209 63.6
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 8.1e-61 238.4 137 80.3
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.2e-59 234.6 138 79.0
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 1.4e-57 227.6 164 68.9
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.2e-51 208.0 127 75.6
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.7e-37 159.8 121 66.1
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 1.1e-36 158.3 121 65.3
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 1.4e-36 157.9 121 64.5
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 6.4e-34 149.1 120 63.3
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 1.1e-33 148.3 99 71.7
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.2e-33 146.7 114 64.0
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.2e-33 146.7 114 64.0
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-32 144.8 162 45.7
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 1.6e-32 144.4 114 63.2
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.0e-31 141.7 109 61.5
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 4.0e-28 129.8 201 43.3
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 2.3e-23 114.0 78 70.5
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 7.4e-22 109.0 73 71.2
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 3.1e-20 103.6 88 59.1
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.1e-17 95.1 67 74.6
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 1.1e-17 95.1 190 38.4
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 2.5e-17 94.0 68 66.2
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.2e-16 91.7 63 74.6
PRCOL_00002191 Prasinoderma coloniale HOM05D005162 ORTHO05D333607 8.8e-15 85.5 203 30.5
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 5.7e-14 82.8 65 64.6
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 5.7e-14 82.8 63 69.8
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 3.1e-12 77.0 58 63.8
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 5.0e-10 69.7 41 78.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 6.1e-08 62.8 75 46.7
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 3.0e-07 60.5 53 60.4
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 5.1e-07 59.7 50 58.0
CDE02G4559 Ceratophyllum demersum HOM05D000243 ORTHO05D000278 8.8e-07 58.9 54 55.6


User provided reference genes

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