Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.6e-80 302.8 154 100.0
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 1.7e-66 256.1 151 86.8
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 2.8e-61 238.8 151 79.5
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 2.8e-61 238.8 148 81.1
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 6.1e-61 237.7 151 78.8
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 8.0e-61 237.3 151 78.8
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 1.0e-60 236.9 151 77.5
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 1.8e-60 236.1 151 77.5
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 1.8e-60 236.1 151 76.8
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 1.8e-60 236.1 151 78.8
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 1.8e-60 236.1 151 77.5
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 1.8e-60 236.1 151 77.5
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 1.8e-60 236.1 151 77.5
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 3.0e-60 235.3 151 78.1
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 4.0e-60 235.0 151 76.2
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 5.2e-60 234.6 151 78.1
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 6.8e-60 234.2 151 77.5
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 8.9e-60 233.8 151 75.5
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 8.9e-60 233.8 151 76.8
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 1.2e-59 233.4 151 76.8
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 1.2e-59 233.4 151 77.5
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 1.5e-59 233.0 151 76.2
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 1.5e-59 233.0 151 77.5
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 1.5e-59 233.0 151 77.5
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.5e-59 233.0 151 77.5
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 2.6e-59 232.3 151 76.8
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 2.6e-59 232.3 151 75.5
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 2.6e-59 232.3 151 76.8
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 2.6e-59 232.3 151 76.2
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 2.6e-59 232.3 151 75.5
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 3.4e-59 231.9 151 77.5
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 3.4e-59 231.9 151 76.8
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 3.4e-59 231.9 151 76.8
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 3.4e-59 231.9 151 76.8
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 3.4e-59 231.9 151 76.8
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 3.4e-59 231.9 151 76.2
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 3.4e-59 231.9 151 76.2
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 3.4e-59 231.9 151 76.2
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 4.4e-59 231.5 151 76.8
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 5.7e-59 231.1 151 73.5
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 5.7e-59 231.1 151 75.5
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 5.7e-59 231.1 151 76.2
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 7.5e-59 230.7 150 77.3
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 7.5e-59 230.7 151 76.8
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 9.8e-59 230.3 151 76.8
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 9.8e-59 230.3 151 75.5
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 9.8e-59 230.3 151 76.2
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 9.8e-59 230.3 151 75.5
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 1.3e-58 229.9 148 77.0
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 1.3e-58 229.9 151 76.8
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 1.3e-58 229.9 151 76.2
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 1.7e-58 229.6 151 74.8
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 1.7e-58 229.6 151 74.8
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 1.7e-58 229.6 151 76.8
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 1.7e-58 229.6 151 76.8
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 2.2e-58 229.2 151 76.2
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 2.2e-58 229.2 151 76.2
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 3.7e-58 228.4 151 74.8
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 3.7e-58 228.4 151 74.8
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 3.7e-58 228.4 151 74.2
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 4.9e-58 228.0 151 74.8
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 4.9e-58 228.0 151 75.5
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 4.9e-58 228.0 151 75.5
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 6.3e-58 227.6 151 73.5
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 6.3e-58 227.6 151 75.5
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 1.1e-57 226.9 151 74.2
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 1.1e-57 226.9 148 76.4
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 1.8e-57 226.1 151 74.8
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 1.8e-57 226.1 151 73.5
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 1.8e-57 226.1 151 74.2
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 2.4e-57 225.7 151 75.5
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 2.4e-57 225.7 151 73.5
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 3.2e-57 225.3 151 74.2
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 3.2e-57 225.3 151 72.2
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 3.2e-57 225.3 151 74.2
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 3.2e-57 225.3 151 74.8
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 3.2e-57 225.3 151 72.2
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 3.2e-57 225.3 151 73.5
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 4.1e-57 224.9 151 72.2
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 4.1e-57 224.9 151 72.8
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.1e-57 224.9 151 72.8
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.1e-57 224.9 151 72.8
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 4.1e-57 224.9 148 77.7
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 5.4e-57 224.6 151 71.5
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 5.4e-57 224.6 151 72.8
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 5.4e-57 224.6 151 73.5
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 9.2e-57 223.8 151 71.5
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 9.2e-57 223.8 148 75.7
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 1.2e-56 223.4 151 70.9
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 1.2e-56 223.4 151 70.9
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 1.2e-56 223.4 151 70.9
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 1.2e-56 223.4 151 70.9
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 1.2e-56 223.4 151 70.9
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 1.2e-56 223.4 151 70.9
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 1.2e-56 223.4 151 72.2
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 2.0e-56 222.6 151 73.5
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 2.0e-56 222.6 151 70.2
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 2.0e-56 222.6 148 75.0
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 2.7e-56 222.2 151 71.5
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 3.5e-56 221.9 148 74.3
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 3.5e-56 221.9 151 74.2
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 4.6e-56 221.5 148 73.6
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 5.9e-56 221.1 151 72.8
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 5.9e-56 221.1 151 72.8
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 7.8e-56 220.7 151 72.8
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 1.0e-55 220.3 151 69.5
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 1.0e-55 220.3 151 69.5
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 1.0e-55 220.3 151 69.5
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 1.3e-55 219.9 151 68.9
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 1.3e-55 219.9 151 68.9
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 1.3e-55 219.9 151 70.2
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 1.7e-55 219.5 148 73.6
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 2.3e-55 219.2 151 71.5
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.3e-55 219.2 151 71.5
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 2.3e-55 219.2 151 72.2
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 6.6e-55 217.6 178 64.0
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 9.5e-54 213.8 182 63.7
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 3.6e-53 211.8 178 63.5
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 6.1e-53 211.1 161 67.1
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 6.1e-53 211.1 161 67.1
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 1.0e-52 210.3 151 67.5
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 1.4e-52 209.9 178 62.9
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 2.3e-52 209.1 161 66.5
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 5.2e-52 208.0 150 66.7
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 8.9e-52 207.2 161 65.8
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 8.9e-52 207.2 151 68.2
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 1.2e-51 206.8 189 59.8
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 2.0e-51 206.1 149 67.8
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 1.7e-50 203.0 140 75.7
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 6.4e-50 201.1 136 76.5
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 5.4e-49 198.0 150 64.7
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 2.7e-48 195.7 151 68.9
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 7.8e-48 194.1 118 79.7
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 2.3e-47 192.6 150 62.7
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 8.6e-47 190.7 131 73.3
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 1.2e-45 186.8 146 67.1
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 2.7e-40 169.1 158 62.0
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 8.1e-37 157.5 149 54.4
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 4.6e-32 141.7 162 50.0
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 4.4e-27 125.2 80 80.0
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 1.7e-26 123.2 118 54.2
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 1.8e-20 103.2 74 70.3
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.2e-18 96.3 122 47.5
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 6.4e-10 68.2 66 56.1
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 6.7e-07 58.2 46 63.0


User provided reference genes

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