Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_749.g13717 Utricularia gibba HOM05D002890 ORTHO05D005855 0.0e+00 2291.9 1210 100.0
MSTRG.23208 Avicennia marina HOM05D002890 ORTHO05D005855 1.4e-304 1050.0 1186 55.5
SalBow5G1338 Salvia bowleyana HOM05D002890 ORTHO05D005855 9.4e-298 1027.3 1250 51.6
Migut.O00260 Erythranthe guttata HOM05D002890 ORTHO05D005855 5.7e-271 938.3 1166 52.6
Dinv20052 Davidia involucrata HOM05D002890 ORTHO05D005855 3.6e-225 786.2 1302 42.6
Dinv13894 Davidia involucrata HOM05D002890 ORTHO05D005855 7.3e-218 761.9 1227 43.7
TAR381G0565 Trochodendron aralioides HOM05D002890 ORTHO05D005855 1.2e-215 754.6 1326 41.8
Sopen06g028640 Solanum pennellii HOM05D002890 ORTHO05D005855 1.6e-212 744.2 1298 43.8
Solyc06g072270.4 Solanum lycopersicum HOM05D002890 ORTHO05D005855 5.6e-210 735.7 1294 43.2
CAN.G65.76 Capsicum annuum HOM05D002890 ORTHO05D005855 9.6e-210 734.9 1292 43.1
Gorai.011G014000 Gossypium raimondii HOM05D002890 ORTHO05D005855 6.2e-209 732.3 1286 42.6
Gohir.D10G012400 Gossypium hirsutum HOM05D002890 ORTHO05D005855 8.1e-209 731.9 1290 42.6
Gohir.A10G012660 Gossypium hirsutum HOM05D002890 ORTHO05D005855 5.3e-208 729.2 1290 42.6
Cfa000220 Carpinus fangiana HOM05D002890 ORTHO05D005855 1.0e-206 724.9 1278 42.1
Thecc.06G220400 Theobroma cacao HOM05D002890 ORTHO05D005855 3.9e-203 713.0 1235 42.2
Duzib192G0355 Durio zibethinus HOM05D002890 ORTHO05D005855 3.3e-202 709.9 1310 41.4
Potri.011G003500 Populus trichocarpa HOM05D002890 ORTHO05D005855 6.9e-200 702.2 1258 42.0
Ciclev10010907m.g Citrus clementina HOM05D002890 ORTHO05D005855 1.5e-199 701.0 1250 42.6
Haze_06800 Corylus avellana HOM05D002890 ORTHO05D005855 1.5e-199 701.0 1310 40.7
Rhsim06G0075600 Rhododendron simsii HOM05D002890 ORTHO05D005855 4.5e-199 699.5 1294 39.8
COL.COLO4_31775 Corchorus olitorius HOM05D002890 ORTHO05D005855 5.0e-198 696.0 1256 42.1
QL03p063516 Quercus lobata HOM05D002890 ORTHO05D005855 2.7e-196 690.3 1326 40.7
QL03p063938 Quercus lobata HOM05D002890 ORTHO05D005855 1.3e-195 688.0 1326 40.7
TAR629G0274 Trochodendron aralioides HOM05D002890 ORTHO05D005855 2.3e-195 687.2 1337 41.1
Sabra11G0001700 Salix brachista HOM05D002890 ORTHO05D005855 5.7e-194 682.6 1257 41.4
CSS0042685 Camellia sinensis var. sinensis HOM05D002890 ORTHO05D005855 2.8e-193 680.2 1232 40.3
MD10G1321400 Malus domestica HOM05D002890 ORTHO05D005855 2.8e-193 680.2 1257 42.0
Actinidia36598 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.8e-193 679.5 1284 40.0
arahy.Tifrunner.gnm1.ann1.3SKL4U Arachis hypogaea HOM05D002890 ORTHO05D005855 1.8e-192 677.6 1247 41.7
Manes.17G038900 Manihot esculenta HOM05D002890 ORTHO05D005855 3.1e-192 676.8 1248 40.6
arahy.Tifrunner.gnm1.ann1.1MU60G Arachis hypogaea HOM05D002890 ORTHO05D005855 9.0e-192 675.2 1233 41.5
Eucgr.E04054 Eucalyptus grandis HOM05D002890 ORTHO05D005855 1.2e-191 674.9 1163 42.6
Cc09_g01670 Coffea canephora HOM05D002890 ORTHO05D005855 5.5e-189 666.0 1238 41.8
CiPaw.09G092000 Carya illinoinensis HOM05D002890 ORTHO05D005855 4.6e-188 662.9 1291 39.5
Glyma.15G107800 Glycine max HOM05D002890 ORTHO05D005855 1.4e-187 661.4 1271 41.1
VMungo1309G2953 Vigna mungo HOM05D002890 ORTHO05D005855 2.8e-185 653.7 1259 40.1
CANSAT56G4108 Cannabis sativa HOM05D002890 ORTHO05D005855 1.4e-184 651.4 1239 40.0
vmacro21934 Vaccinium macrocarpon HOM05D002890 ORTHO05D005855 6.9e-184 649.0 1289 38.6
Nitab4.5_0001678g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-182 644.4 1313 40.4
CANSAT64G2516 Cannabis sativa HOM05D002890 ORTHO05D005855 2.9e-182 643.7 1263 39.3
Peaxi162Scf00643g00544 Petunia axillaris HOM05D002890 ORTHO05D005855 3.2e-181 640.2 1316 39.7
Glyma.13G204900 Glycine max HOM05D002890 ORTHO05D005855 5.5e-181 639.4 1333 39.5
Nitab4.5_0000033g0410 Nicotiana tabacum HOM05D002890 ORTHO05D005855 3.6e-180 636.7 1330 39.8
TWI38G1984 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 3.6e-180 636.7 1318 40.3
Prupe.4G020900 Prunus persica HOM05D002890 ORTHO05D005855 1.4e-179 634.8 1262 39.9
VMungo0540G2163 Vigna mungo HOM05D002890 ORTHO05D005855 3.0e-179 633.6 1339 37.4
Phvul.006G149850 Phaseolus vulgaris HOM05D002890 ORTHO05D005855 1.1e-178 631.7 1313 39.3
Sed0017963 Sechium edule HOM05D002890 ORTHO05D005855 2.6e-178 630.6 1174 41.2
TWI38G1729 Tripterygium wilfordii HOM05D002890 ORTHO05D005855 3.3e-178 630.2 1160 41.8
Lalb_Chr20g0118631 Lupinus albus HOM05D002890 ORTHO05D005855 4.4e-178 629.8 1265 39.6
MELO3C013937.2 Cucumis melo HOM05D002890 ORTHO05D005855 1.3e-177 628.2 1123 41.9
GSVIVG01012724001 Vitis vinifera HOM05D002890 ORTHO05D005855 2.6e-175 620.5 1180 38.9
FAN21G0074 Fragaria x ananassa HOM05D002890 ORTHO05D005855 7.7e-175 619.0 1282 38.4
Psat3g207880 Pisum sativum HOM05D002890 ORTHO05D005855 1.0e-174 618.6 1266 38.2
FvH4_3g02070 Fragaria vesca HOM05D002890 ORTHO05D005855 1.3e-174 618.2 1235 39.6
RcHm_v2.0_Chr5g0002971 Rosa chinensis HOM05D002890 ORTHO05D005855 1.3e-174 618.2 1223 39.7
CsaV3_3G002680 Cucumis sativus L. HOM05D002890 ORTHO05D005855 1.7e-174 617.8 1162 40.9
Ca_00660_v3 Cicer arietinum L. HOM05D002890 ORTHO05D005855 8.5e-174 615.5 1256 38.7
Aqoxy1G00468 Aquilegia oxysepala HOM05D002890 ORTHO05D005855 2.5e-173 614.0 1273 38.0
Lj6g0006472 Lotus japonicus HOM05D002890 ORTHO05D005855 4.2e-173 613.2 1273 39.7
Lj1g0005233 Lotus japonicus HOM05D002890 ORTHO05D005855 4.7e-172 609.8 1283 39.8
TPR.G9950 Trifolium pratense HOM05D002890 ORTHO05D005855 1.8e-171 607.8 1257 38.9
Sc17g0007380 Simmondsia chinensis HOM05D002890 ORTHO05D005855 4.0e-171 606.7 1316 37.8
DCAR_028200 Daucus carota HOM05D002890 ORTHO05D005855 1.1e-170 605.1 1319 38.2
THA.LOC104812970 Tarenaya hassleriana HOM05D002890 ORTHO05D005855 2.0e-170 604.4 1289 39.2
FAN25G2328 Fragaria x ananassa HOM05D002890 ORTHO05D005855 9.7e-170 602.1 1279 38.1
Hund21410 Selenicereus undatus HOM05D002890 ORTHO05D005855 8.2e-169 599.0 1288 37.9
Medtr2g023280 Medicago truncatula HOM05D002890 ORTHO05D005855 3.1e-168 597.0 1269 38.0
PSO017G2731 Papaver somniferum HOM05D002890 ORTHO05D005855 2.0e-167 594.3 1253 37.6
ClCG10G002660 Citrullus lanatus HOM05D002890 ORTHO05D005855 6.5e-166 589.3 1125 40.5
MD05G1346800 Malus domestica HOM05D002890 ORTHO05D005855 1.5e-162 578.2 1087 40.7
HanXRQChr15g0470641 Helianthus annuus HOM05D002890 ORTHO05D005855 3.5e-159 567.0 1188 38.7
PSO478G2895 Papaver somniferum HOM05D002890 ORTHO05D005855 2.0e-154 551.2 1255 37.5
AL2G10210 Arabidopsis lyrata HOM05D002890 ORTHO05D005855 7.5e-154 549.3 1246 38.2
ECA236G1013 Erigeron canadensis HOM05D002890 ORTHO05D005855 3.7e-153 547.0 1231 37.6
CiPaw.10G071100 Carya illinoinensis HOM05D002890 ORTHO05D005855 3.1e-152 543.9 925 40.6
PGR042G1125 Punica granatum HOM05D002890 ORTHO05D005855 3.8e-150 537.0 1233 37.3
Aa31LG2G1570 Aethionema arabicum HOM05D002890 ORTHO05D005855 4.3e-149 533.5 1260 36.9
AUR62029351 Chenopodium quinoa HOM05D002890 ORTHO05D005855 4.3e-149 533.5 1261 35.6
Nitab4.5_0001247g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.3e-149 532.7 1126 39.4
AT1G64570 Arabidopsis thaliana HOM05D002890 ORTHO05D005855 9.5e-149 532.3 1222 37.2
CARHR046380 Cardamine hirsuta HOM05D002890 ORTHO05D005855 3.4e-146 523.9 1226 36.5
Sp2g00190 Schrenkiella parvula HOM05D002890 ORTHO05D005855 1.3e-142 511.9 1215 35.4
Ah.06g183850 Amaranthus hybridus HOM05D002890 ORTHO05D005855 9.5e-141 505.8 1254 35.0
AUR62034232 Chenopodium quinoa HOM05D002890 ORTHO05D005855 3.6e-140 503.8 1234 34.8
ATR0580G054 Amborella trichopoda HOM05D002890 ORTHO05D005855 2.6e-138 497.7 1440 31.9
Carub.0002s0019 Capsella rubella HOM05D002890 ORTHO05D005855 2.6e-138 497.7 1230 36.1
Thhalv10023221m.g Eutrema salsugineum HOM05D002890 ORTHO05D005855 1.7e-137 495.0 1215 35.1
C09p17660 Brassica napus HOM05D002890 ORTHO05D005855 4.9e-137 493.4 1208 35.3
BolC9t54660H Brassica oleracea HOM05D002890 ORTHO05D005855 4.9e-137 493.4 1208 35.3
BraA09t37106Z Brassica rapa HOM05D002890 ORTHO05D005855 2.4e-136 491.1 1191 36.6
A09p14580 Brassica napus HOM05D002890 ORTHO05D005855 7.0e-136 489.6 1190 36.3
CDE05G0302 Ceratophyllum demersum HOM05D002890 ORTHO05D005855 3.5e-135 487.3 1242 35.3
Nitab4.5_0022153g0010 Nicotiana tabacum HOM05D002890 ORTHO05D005855 7.8e-135 486.1 638 52.0
Lsat_1_v5_gn_7_16040 Lactuca sativa HOM05D002890 ORTHO05D005855 1.5e-133 481.9 1123 35.3
SEGI_27437 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 4.0e-131 473.8 1010 37.0
Nitab4.5_0002954g0050 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.9e-128 464.9 837 41.8
MBI15_g03194_MAGBIO Magnolia biondii HOM05D002890 ORTHO05D005855 2.4e-128 464.5 1135 35.8
Zm00001eb310710 Zea mays HOM05D002890 ORTHO05D005855 2.3e-126 458.0 1194 35.1
EL10Ac4g08116 Beta vulgaris HOM05D002890 ORTHO05D005855 3.9e-126 457.2 1248 33.0
Oeu039345.1 Olea europaea HOM05D002890 ORTHO05D005855 1.6e-116 425.2 461 52.5
Pp3c26_140 Physcomitrium patens HOM05D002890 ORTHO05D005855 1.7e-113 415.2 775 39.5
Mapoly0029s0108 Marchantia polymorpha HOM05D002890 ORTHO05D005855 2.0e-106 391.7 1052 33.4
Atru.chr10.2227 Acer truncatum HOM05D002890 ORTHO05D005855 8.1e-100 369.8 629 43.2
Nn4g25681 Nelumbo nucifera HOM05D002890 ORTHO05D005855 3.0e-94 351.3 628 43.3
SGA_v2.0_scaffold25G10747 Striga asiatica HOM05D002890 ORTHO05D005855 5.1e-94 350.5 522 45.0
HPP92_025073 Vanilla planifolia HOM05D002890 ORTHO05D005855 9.0e-91 339.7 1236 30.6
SMO364G0505 Selaginella moellendorffii HOM05D002890 ORTHO05D005855 6.5e-89 333.6 517 43.9
Actinidia10696 Actinidia chinensis HOM05D002890 ORTHO05D005855 4.2e-88 330.9 653 38.4
AagrBONN_evm.TU.Sc2ySwM_228.3189 Anthoceros agrestis HOM05D002890 ORTHO05D005855 7.4e-85 320.1 718 38.0
BcaC04g22581 Brassica carinata HOM05D002890 ORTHO05D007906 2.1e-79 302.0 493 40.2
HPP92_025078 Vanilla planifolia HOM05D002890 ORTHO05D005855 3.0e-78 298.1 645 37.2
SHI02202 Sapria himalayana HOM05D000002 ORTHO05D000001 6.5e-73 280.4 487 42.3
RcHm_v2.0_Chr5g0003091 Rosa chinensis HOM05D002890 ORTHO05D005855 7.7e-66 256.9 323 49.2
Lj1P1230T41 Lonicera japonica HOM05D002890 ORTHO05D005855 1.9e-64 252.3 400 45.5
Atru.chr10.2228 Acer truncatum HOM05D002890 ORTHO05D005855 4.4e-61 241.1 547 34.2
RcHm_v2.0_Chr5g0003031 Rosa chinensis HOM05D002890 ORTHO05D005855 2.0e-53 215.7 294 46.6
CBR_g32188 Chara braunii HOM05D002890 ORTHO05D005855 2.2e-49 202.2 611 29.8
Oeu002905.1 Olea europaea HOM05D002890 ORTHO05D005855 2.5e-48 198.7 444 39.2
QL05p073153 Quercus lobata HOM05D002890 ORTHO05D005855 6.8e-46 190.7 263 41.1
BcaC01g05870 Brassica carinata HOM05D002890 ORTHO05D005855 2.4e-43 182.2 511 31.9
C03p21570 Brassica napus HOM05D002890 ORTHO05D005855 1.2e-42 179.9 514 30.7
SHI01979 Sapria himalayana HOM05D002890 ORTHO05D005855 4.5e-42 177.9 147 58.5
Cpa.g.c46709 Carica papaya HOM05D002890 ORTHO05D005855 2.5e-32 145.6 235 40.0
MD05G1347100 Malus domestica HOM05D002890 ORTHO05D005855 3.3e-32 145.2 334 35.3
SEGI_38151 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 6.1e-31 141.0 718 27.2
Potri.004G015034 Populus trichocarpa HOM05D002890 ORTHO05D005855 1.0e-30 140.2 235 39.6
BolC3t14541H Brassica oleracea HOM05D002890 ORTHO05D005855 1.7e-28 132.9 475 28.4
Medtr2g023290 Medicago truncatula HOM05D002975 ORTHO05D005855 3.7e-28 131.7 495 30.5
BcaC04g22582 Brassica carinata HOM05D002890 ORTHO05D005855 4.6e-26 124.8 439 32.3
BcaB07g31476 Brassica carinata HOM05D002890 ORTHO05D005855 3.1e-22 112.1 375 32.5
MCO05G671 Micromonas commoda HOM05D002890 ORTHO05D005855 2.0e-18 99.4 492 24.6
QL05p073148 Quercus lobata HOM05D002890 ORTHO05D005855 6.0e-18 97.8 540 26.5
Duzib160G0022 Durio zibethinus HOM05D002890 ORTHO05D005855 9.5e-16 90.5 272 39.0
CiPaw.10G071000 Carya illinoinensis HOM05D002890 ORTHO05D005855 2.1e-15 89.4 275 37.8
Nitab4.5_0002954g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.4e-14 86.7 127 41.7
Nitab4.5_0000267g0080 Nicotiana tabacum HOM05D002890 ORTHO05D005855 5.2e-14 84.7 137 43.1
SHI02204 Sapria himalayana HOM05D002890 ORTHO05D005855 4.4e-13 81.6 189 33.3
Nitab4.5_0002954g0060 Nicotiana tabacum HOM05D002890 ORTHO05D005855 1.7e-09 69.7 105 60.0
SEGI_20102 Sequoiadendron giganteum HOM05D002890 ORTHO05D005855 3.0e-09 68.9 128 39.1
HPP92_025077 Vanilla planifolia HOM05D002890 ORTHO05D005855 8.6e-09 67.4 497 26.2
Haze_20535 Corylus avellana HOM05D002890 ORTHO05D038830 6.8e-06 57.8 120 36.7


User provided reference genes

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