Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 5.4e-270 933.7 463 100.0
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 6.9e-209 730.7 463 77.5
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 2.7e-205 718.8 463 74.9
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 8.8e-204 713.8 463 74.5
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.8e-202 708.8 463 74.9
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.8e-202 708.0 463 74.3
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.4e-201 705.7 463 74.9
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 5.3e-201 704.5 483 71.6
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 6.5e-199 697.6 478 71.3
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.5e-198 695.7 474 72.2
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 3.2e-198 695.3 476 70.8
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 9.4e-198 693.7 473 71.7
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 3.6e-197 691.8 473 71.2
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 4.7e-197 691.4 490 70.2
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 4.7e-197 691.4 478 69.9
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 6.1e-197 691.0 475 69.9
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 2.3e-196 689.1 479 69.5
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 3.0e-196 688.7 479 69.3
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 4.0e-196 688.3 473 70.8
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.5e-195 686.4 485 69.3
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.5e-195 686.4 478 69.9
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.5e-195 686.4 478 69.9
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 4.4e-195 684.9 473 70.4
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 4.4e-195 684.9 479 68.7
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 4.4e-195 684.9 463 73.2
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 4.4e-195 684.9 478 69.2
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 1.7e-194 682.9 483 69.4
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 3.7e-194 681.8 483 69.8
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 6.3e-194 681.0 474 70.5
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 8.2e-194 680.6 476 70.0
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 8.2e-194 680.6 478 68.0
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.8e-193 679.5 477 69.8
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.1e-193 678.7 476 70.0
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 4.5e-192 674.9 476 69.5
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 7.7e-192 674.1 478 68.0
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 7.7e-192 674.1 477 69.6
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 2.2e-191 672.5 485 69.5
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 6.5e-191 671.0 477 69.0
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 8.5e-191 670.6 476 69.3
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 1.9e-190 669.5 474 68.6
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 3.2e-190 668.7 481 67.4
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.2e-190 668.3 471 68.8
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.2e-189 666.8 476 68.7
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.1e-189 666.0 482 68.0
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.1e-189 666.0 480 68.1
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 2.7e-189 665.6 479 69.5
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 3.6e-189 665.2 480 68.1
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.8e-188 662.9 475 68.4
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 2.3e-188 662.5 476 69.3
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 3.0e-188 662.1 481 67.8
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 6.8e-188 661.0 479 67.2
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.2e-187 660.2 480 67.5
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.4e-187 658.7 478 67.6
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 3.4e-187 658.7 478 67.6
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 4.4e-187 658.3 505 63.6
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 9.8e-187 657.1 472 67.2
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 9.8e-187 657.1 475 66.5
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.3e-186 656.8 475 68.0
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 2.2e-186 656.0 475 66.9
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 3.7e-186 655.2 475 68.0
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 6.3e-186 654.4 466 69.3
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 6.3e-186 654.4 479 65.8
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.4e-185 653.3 478 66.9
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.1e-185 652.1 484 66.5
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 4.1e-185 651.7 475 66.1
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 7.0e-185 651.0 469 68.9
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 7.0e-185 651.0 478 66.9
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.2e-184 650.2 482 65.6
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 1.6e-184 649.8 473 67.7
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-184 649.4 484 66.3
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 2.0e-184 649.4 474 68.8
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 4.5e-184 648.3 482 67.4
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 5.9e-184 647.9 475 65.5
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 5.9e-184 647.9 473 68.3
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 1.3e-183 646.7 476 66.6
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.3e-183 646.7 475 65.7
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.3e-183 646.7 484 66.3
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.7e-183 646.4 496 64.9
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 1.7e-183 646.4 475 65.7
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 6.5e-183 644.4 442 70.8
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 7.2e-182 641.0 473 66.8
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 9.4e-182 640.6 507 62.7
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 9.4e-182 640.6 473 66.2
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 1.2e-181 640.2 480 64.4
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 3.6e-181 638.6 473 66.6
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 6.1e-181 637.9 475 65.5
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 8.0e-181 637.5 473 66.8
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 8.0e-181 637.5 473 66.8
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 4.0e-180 635.2 458 68.1
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 6.8e-180 634.4 456 67.3
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 4.4e-179 631.7 472 64.6
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 7.5e-179 630.9 473 63.8
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 3.7e-178 628.6 497 63.8
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 3.7e-178 628.6 480 63.1
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 7.0e-177 624.4 479 64.5
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-176 622.9 517 61.3
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.7e-175 619.8 415 70.6
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 2.9e-175 619.0 471 64.5
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 6.6e-175 617.8 488 63.7
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 7.3e-174 614.4 487 62.6
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.1e-173 612.8 486 62.1
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 2.8e-173 612.5 491 62.5
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 2.2e-170 602.8 568 56.5
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 2.3e-167 592.8 432 66.9
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 6.2e-165 584.7 474 60.8
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 3.1e-164 582.4 552 56.3
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 8.9e-164 580.9 429 68.1
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.5e-163 580.1 486 59.3
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 1.5e-163 580.1 511 58.7
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.4e-163 578.6 418 67.2
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 2.7e-160 569.3 468 60.5
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 2.5e-158 562.8 477 60.4
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 1.2e-155 553.9 476 56.5
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 3.4e-155 552.4 486 57.0
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 8.6e-151 537.7 424 65.1
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 6.2e-141 505.0 412 61.2
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 2.4e-129 466.5 356 67.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.4e-124 450.7 490 51.2
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 2.4e-121 439.9 470 50.0
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 1.1e-100 371.3 251 67.3
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 8.2e-93 345.1 517 40.4
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.2e-91 341.3 593 36.6
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 5.9e-83 312.4 255 61.6
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.4e-79 301.2 211 72.0
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.2e-75 288.1 210 64.3
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 9.4e-73 278.5 182 65.9
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 3.0e-71 273.5 250 53.6
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 8.8e-71 271.9 539 35.4
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 1.0e-66 258.5 285 55.4
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 5.4e-60 236.1 181 69.6
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 7.8e-59 232.3 250 51.2
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 5.6e-57 226.1 175 58.3
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 6.6e-50 202.6 476 32.8
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 3.7e-45 186.8 171 55.0
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 4.1e-44 183.3 377 33.2
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 6.6e-42 176.0 432 31.5
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.3e-37 161.8 450 29.3
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.4e-36 157.5 447 28.9
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 1.6e-35 154.8 212 44.8
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.0e-30 137.9 195 42.1
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.6e-17 93.2 132 40.2
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 9.6e-17 92.4 173 41.0
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 9.3e-12 75.9 65 60.0
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 3.9e-10 70.5 62 56.5
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.7e-10 69.7 65 55.4
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 5.6e-09 66.6 63 57.1
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 5.3e-07 60.1 69 46.4
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-06 58.9 70 45.7
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 1.5e-06 58.5 68 45.6
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 5.8e-06 56.6 83 44.6


User provided reference genes

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