Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 3.2e-142 508.4 266 100.0
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 4.6e-64 248.8 194 67.0
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 7.8e-64 248.1 194 69.1
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 7.3e-62 241.5 187 68.4
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 6.2e-61 238.4 194 64.9
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 4.0e-60 235.7 189 66.1
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 2.6e-59 233.0 197 66.0
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 7.6e-59 231.5 187 66.3
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.7e-58 230.3 187 65.8
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 2.9e-58 229.6 194 62.9
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 2.9e-58 229.6 194 62.4
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 2.9e-58 229.6 194 62.4
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 3.8e-58 229.2 194 66.0
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 8.4e-58 228.0 187 63.6
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 1.1e-57 227.6 187 63.1
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.2e-57 226.1 192 62.5
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 4.2e-57 225.7 194 61.3
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 4.2e-57 225.7 189 64.0
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 5.4e-57 225.3 187 63.1
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 7.1e-57 224.9 194 60.3
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 7.1e-57 224.9 189 63.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 7.1e-57 224.9 194 61.3
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 9.3e-57 224.6 194 60.8
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 9.3e-57 224.6 187 60.4
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 1.2e-56 224.2 187 63.1
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.6e-56 223.8 190 61.6
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.6e-56 223.8 194 61.3
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 1.6e-56 223.8 187 63.1
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 2.1e-56 223.4 186 61.3
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 2.1e-56 223.4 193 61.7
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.1e-56 223.4 189 63.0
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 3.5e-56 222.6 194 59.8
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 1.3e-55 220.7 187 62.6
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 1.8e-55 220.3 178 64.6
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 1.8e-55 220.3 187 62.0
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 2.3e-55 219.9 194 58.8
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 2.5e-54 216.5 187 61.5
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 3.3e-54 216.1 187 61.5
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 2.1e-53 213.4 187 60.4
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 2.1e-53 213.4 187 60.4
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 2.8e-53 213.0 194 59.3
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 4.8e-53 212.2 187 57.2
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 8.1e-53 211.5 193 57.5
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 1.1e-52 211.1 187 61.0
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.1e-52 211.1 192 57.8
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 1.8e-52 210.3 188 59.6
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 1.8e-52 210.3 187 57.8
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 2.4e-52 209.9 187 59.4
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 9.0e-52 208.0 187 58.8
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.2e-51 207.6 187 59.9
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 1.5e-51 207.2 224 53.1
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 2.6e-51 206.5 187 58.3
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 3.4e-51 206.1 187 59.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.7e-50 203.8 193 58.5
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-50 203.4 187 59.4
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.2e-50 203.4 194 56.7
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 2.9e-50 203.0 187 60.4
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.9e-50 202.2 187 58.3
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 8.4e-50 201.4 194 56.7
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.1e-49 201.1 187 58.3
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.4e-49 200.7 193 55.4
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 2.4e-49 199.9 195 56.4
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 3.2e-49 199.5 187 57.2
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 4.2e-49 199.1 249 47.4
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 5.5e-49 198.7 187 57.8
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 9.3e-49 198.0 187 57.2
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.6e-48 197.2 189 57.1
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.0e-47 194.5 187 56.7
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.3e-47 194.1 187 56.1
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 1.8e-47 193.7 115 84.3
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 3.0e-47 193.0 221 49.3
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 8.7e-47 191.4 194 49.5
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 7.4e-46 188.3 112 82.1
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.3e-45 187.6 123 76.4
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 2.8e-45 186.4 115 79.1
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 2.8e-45 186.4 187 55.6
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 3.1e-44 183.0 189 56.1
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 5.3e-44 182.2 186 53.8
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 6.9e-44 181.8 187 51.9
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 4.5e-43 179.1 114 74.6
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-41 174.5 175 54.9
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 2.5e-41 173.3 189 54.0
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 4.2e-41 172.6 104 80.8
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.2e-40 171.0 189 49.2
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 3.5e-40 169.5 189 49.2
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 6.7e-39 165.2 187 50.8
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 8.7e-39 164.9 186 47.3
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 1.5e-38 164.1 186 47.3
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.3e-37 161.0 175 52.6
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.2e-37 160.2 192 47.4
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 8.2e-37 158.3 186 44.1
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.4e-36 157.5 186 44.1
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 3.1e-36 156.4 191 47.6
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 5.3e-36 155.6 193 47.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 9.0e-36 154.8 189 47.6
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.6e-35 153.3 192 46.4
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 3.4e-35 152.9 92 79.3
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 3.4e-35 152.9 157 53.5
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 7.6e-35 151.8 193 46.1
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 1.7e-34 150.6 189 46.6
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 2.2e-34 150.2 152 53.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 3.8e-34 149.4 191 46.1
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 3.8e-34 149.4 193 45.6
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 3.8e-34 149.4 171 49.7
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 5.0e-34 149.1 193 45.6
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 5.0e-34 149.1 186 44.6
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.4e-33 147.5 189 45.5
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 1.9e-33 147.1 192 44.3
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.2e-33 146.4 144 54.2
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 6.1e-32 142.1 151 51.7
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 6.1e-32 142.1 128 58.6
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 5.1e-31 139.0 188 42.6
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 5.1e-31 139.0 188 42.6
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 4.3e-30 136.0 188 42.0
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 6.3e-29 132.1 140 54.3
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.4e-28 130.2 154 50.0
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 3.1e-28 129.8 175 44.0
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.2e-27 127.9 194 43.3
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 2.6e-27 126.7 192 43.2
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 2.6e-27 126.7 151 45.7
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.5e-27 125.9 86 74.4
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 3.8e-26 122.9 103 61.2
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 2.7e-24 116.7 171 41.5
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.6e-24 116.3 192 39.6
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 7.9e-24 115.2 158 45.6
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 8.8e-23 111.7 192 37.5
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 2.0e-22 110.5 206 35.9
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 2.0e-22 110.5 190 35.8
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 1.4e-20 104.4 134 44.8
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.8e-20 104.0 134 44.8
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 1.8e-20 104.0 134 44.8
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 7.7e-19 98.6 214 34.6
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.4e-17 94.4 190 33.2
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 3.6e-16 89.7 116 44.8
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 6.1e-16 89.0 175 30.9
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 5.2e-15 85.9 114 44.7
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 2.2e-13 80.5 188 30.3
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.2e-11 74.7 43 81.4
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 2.0e-11 73.9 77 49.4
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 2.6e-11 73.6 134 35.8
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 3.5e-11 73.2 98 46.9
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 4.5e-11 72.8 36 94.4
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 4.5e-11 72.8 36 94.4
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 1.3e-10 71.2 46 78.3
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 3.8e-10 69.7 36 91.7
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 5.0e-10 69.3 36 91.7
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.1e-09 68.2 35 88.6
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 1.5e-09 67.8 79 49.4
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 1.4e-07 61.2 38 73.7


User provided reference genes

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