Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g8654 Utricularia gibba HOM05D004657 ORTHO05D005562 6.8e-205 717.2 396 100.0
unitig_32.g11813 Utricularia gibba HOM05D004657 ORTHO05D005562 3.3e-151 538.9 396 77.0
MSTRG.3785 Avicennia marina HOM05D004657 ORTHO05D005562 9.5e-98 361.3 357 61.6
MSTRG.23340 Avicennia marina HOM05D004657 ORTHO05D005562 1.3e-94 350.9 458 51.7
Migut.L00115 Erythranthe guttata HOM05D004657 ORTHO05D005562 3.1e-93 346.3 328 63.4
Cc00_g16220 Coffea canephora HOM05D004657 ORTHO05D005562 9.2e-93 344.7 249 73.5
Gohir.A02G143600 Gossypium hirsutum HOM05D004657 ORTHO05D005562 2.7e-92 343.2 278 65.5
PGR004G1209 Punica granatum HOM05D004657 ORTHO05D005562 4.5e-92 342.4 430 51.9
Hma1.2p1_0308F.1_g120150 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 1.0e-91 341.3 407 55.0
Lj6g0008145 Lotus japonicus HOM05D004657 ORTHO05D005562 1.7e-91 340.5 421 51.3
Gorai.003G038700 Gossypium raimondii HOM05D004657 ORTHO05D005562 2.9e-91 339.7 278 64.4
VMungo1383G1250 Vigna mungo HOM05D004657 ORTHO05D005562 3.9e-91 339.3 422 51.2
Ciclev10027598m.g Citrus clementina HOM05D004657 ORTHO05D005562 5.0e-91 339.0 236 72.5
SGA_v2.0_scaffold47G17783 Striga asiatica HOM05D004657 ORTHO05D005562 3.3e-90 336.3 378 56.3
COL.COLO4_09954 Corchorus olitorius HOM05D004657 ORTHO05D005562 4.3e-90 335.9 250 69.2
Cpa.g.sc621.1 Carica papaya HOM05D004657 ORTHO05D005562 7.3e-90 335.1 236 71.2
Eucgr.I00428 Eucalyptus grandis HOM05D004657 ORTHO05D005562 7.3e-90 335.1 290 62.4
Gohir.D03G036900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 1.2e-89 334.3 278 64.0
Lsat_1_v5_gn_4_142741 Lactuca sativa HOM05D004657 ORTHO05D005562 1.2e-89 334.3 238 72.7
Hma1.2p1_0047F.1_g027890 Hydrangea macrophylla HOM05D004657 ORTHO05D005562 2.8e-89 333.2 321 59.8
Potri.007G091900 Populus trichocarpa HOM05D004657 ORTHO05D005562 3.6e-89 332.8 304 60.2
Thecc.01G102700 Theobroma cacao HOM05D004657 ORTHO05D005562 8.0e-89 331.6 291 62.5
CANSAT01G2418 Cannabis sativa HOM05D004657 ORTHO05D005562 1.8e-88 330.5 357 55.7
Manes.12G135900 Manihot esculenta HOM05D004657 ORTHO05D005562 4.0e-88 329.3 447 48.8
Prupe.6G184700 Prunus persica HOM05D004657 ORTHO05D005562 4.0e-88 329.3 319 59.9
TAR381G0611 Trochodendron aralioides HOM05D004657 ORTHO05D005562 4.0e-88 329.3 238 68.9
Thhalv10026765m.g Eutrema salsugineum HOM05D004657 ORTHO05D005562 8.9e-88 328.2 258 65.9
Aa31LG6G15430 Aethionema arabicum HOM05D004657 ORTHO05D005562 4.4e-87 325.9 237 68.8
Duzib264G0234 Durio zibethinus HOM05D004657 ORTHO05D005562 4.4e-87 325.9 251 67.3
AL7G12070 Arabidopsis lyrata HOM05D004657 ORTHO05D005562 5.8e-87 325.5 255 65.5
AT4G39840 Arabidopsis thaliana HOM05D004657 ORTHO05D005562 1.3e-86 324.3 237 67.9
A01p00750 Brassica napus HOM05D004657 ORTHO05D005562 1.3e-86 324.3 237 67.9
BraA01t00078Z Brassica rapa HOM05D004657 ORTHO05D005562 1.3e-86 324.3 237 67.9
CARHR246860 Cardamine hirsuta HOM05D004657 ORTHO05D005562 1.7e-86 323.9 237 68.4
Sp7g36050 Schrenkiella parvula HOM05D004657 ORTHO05D005562 1.7e-86 323.9 237 68.8
TAR625G0843 Trochodendron aralioides HOM05D004657 ORTHO05D005562 2.2e-86 323.6 238 68.1
Glyma.18G017700 Glycine max HOM05D004657 ORTHO05D005562 2.9e-86 323.2 235 68.9
Carub.0007s0176 Capsella rubella HOM05D004657 ORTHO05D005562 3.7e-86 322.8 251 66.1
RcHm_v2.0_Chr2g0114541 Rosa chinensis HOM05D004657 ORTHO05D005562 3.7e-86 322.8 244 68.0
MELO3C007762.2 Cucumis melo HOM05D004657 ORTHO05D005562 4.9e-86 322.4 408 51.0
Rhsim10G0161200 Rhododendron simsii HOM05D004657 ORTHO05D005562 4.9e-86 322.4 354 55.9
C01p00860 Brassica napus HOM05D004657 ORTHO05D005562 6.4e-86 322.0 237 67.5
BolC1t00087H Brassica oleracea HOM05D004657 ORTHO05D005562 6.4e-86 322.0 237 67.5
Cfa002676 Carpinus fangiana HOM05D004657 ORTHO05D005562 6.4e-86 322.0 308 60.1
ClCG01G018830 Citrullus lanatus HOM05D004657 ORTHO05D005562 6.4e-86 322.0 428 49.1
Peaxi162Scf00805g00021 Petunia axillaris HOM05D004657 ORTHO05D005562 8.3e-86 321.6 348 54.3
Sabra05G0063000 Salix brachista HOM05D004657 ORTHO05D005562 8.3e-86 321.6 246 67.9
Sabra07G0075500 Salix brachista HOM05D004657 ORTHO05D005562 1.4e-85 320.9 251 66.9
Lj2P550T25 Lonicera japonica HOM05D004657 ORTHO05D005562 1.9e-85 320.5 251 68.9
Haze_24945 Corylus avellana HOM05D004657 ORTHO05D005562 2.4e-85 320.1 324 57.7
SGA_v2.0_scaffold34G13594 Striga asiatica HOM05D004657 ORTHO05D005562 2.4e-85 320.1 389 53.7
CiPaw.04G098700 Carya illinoinensis HOM05D004657 ORTHO05D005562 4.1e-85 319.3 393 51.7
PGSC0003DMG400001895 Solanum tuberosum HOM05D004657 ORTHO05D005562 4.1e-85 319.3 439 48.3
TWI53G1309 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 4.1e-85 319.3 349 53.6
DCAR_014230 Daucus carota HOM05D004657 ORTHO05D005562 5.4e-85 318.9 417 49.9
Gohir.D11G222100 Gossypium hirsutum HOM05D004657 ORTHO05D005562 5.4e-85 318.9 404 48.8
MSTRG.2565 Avicennia marina HOM05D004657 ORTHO05D005562 7.0e-85 318.5 451 49.0
FAN28G0529 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.0e-85 318.5 411 49.9
THA.LOC104807698 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 1.2e-84 317.8 237 69.2
Potri.005G076500 Populus trichocarpa HOM05D004657 ORTHO05D005562 1.6e-84 317.4 299 58.5
Duzib147G0720 Durio zibethinus HOM05D004657 ORTHO05D005562 2.0e-84 317.0 457 47.7
MD15G1325300 Malus domestica HOM05D004657 ORTHO05D005562 2.0e-84 317.0 247 66.4
Medtr3g087360 Medicago truncatula HOM05D004657 ORTHO05D005562 2.0e-84 317.0 278 59.7
Solyc03g078640.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.7e-84 316.6 248 68.5
Sopen03g021540 Solanum pennellii HOM05D004657 ORTHO05D005562 2.7e-84 316.6 248 68.5
BcaNung05325 Brassica carinata HOM05D004657 ORTHO05D005562 6.0e-84 315.5 238 67.2
Gohir.A11G200900 Gossypium hirsutum HOM05D004657 ORTHO05D005562 6.0e-84 315.5 404 48.3
Nitab4.5_0000897g0030 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.0e-84 315.5 244 69.3
CiPaw.03G141100 Carya illinoinensis HOM05D004657 ORTHO05D005562 7.8e-84 315.1 455 46.8
FAN23G0181 Fragaria x ananassa HOM05D004657 ORTHO05D005562 7.8e-84 315.1 244 66.8
FAN19G1231 Fragaria x ananassa HOM05D004657 ORTHO05D005562 1.0e-83 314.7 407 49.1
BolC3t20095H Brassica oleracea HOM05D004657 ORTHO05D005562 1.3e-83 314.3 238 66.8
Gorai.007G239400 Gossypium raimondii HOM05D004657 ORTHO05D005562 1.3e-83 314.3 401 50.1
Sopen04g024940 Solanum pennellii HOM05D004657 ORTHO05D005562 1.3e-83 314.3 350 55.4
QL06p049779 Quercus lobata HOM05D004657 ORTHO05D005562 2.3e-83 313.5 296 60.5
Glyma.08G136600 Glycine max HOM05D004657 ORTHO05D005562 3.0e-83 313.2 428 49.5
PGSC0003DMG400023187 Solanum tuberosum HOM05D004657 ORTHO05D005562 3.0e-83 313.2 358 54.5
TWI77G0153 Tripterygium wilfordii HOM05D004657 ORTHO05D005562 3.0e-83 313.2 244 66.8
Manes.13G075300 Manihot esculenta HOM05D004657 ORTHO05D005562 3.9e-83 312.8 446 45.5
A08p23310 Brassica napus HOM05D004657 ORTHO05D005562 6.6e-83 312.0 238 66.4
BraA08t34286Z Brassica rapa HOM05D004657 ORTHO05D005562 6.6e-83 312.0 238 66.4
FAN26G2002 Fragaria x ananassa HOM05D004657 ORTHO05D005562 6.6e-83 312.0 408 49.5
Nitab4.5_0000004g0340 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.6e-83 312.0 255 67.1
Glyma.11G239700 Glycine max HOM05D004657 ORTHO05D005562 1.1e-82 311.2 436 47.5
HanXRQChr17g0543271 Helianthus annuus HOM05D004657 ORTHO05D005562 1.1e-82 311.2 435 47.8
Lalb_Chr07g0185151 Lupinus albus HOM05D004657 ORTHO05D005562 1.9e-82 310.5 363 52.6
arahy.Tifrunner.gnm1.ann1.Q2VPH2 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.5e-82 310.1 303 57.1
Solyc04g055090.1 Solanum lycopersicum HOM05D004657 ORTHO05D005562 2.5e-82 310.1 354 54.5
CsaV3_6G045490 Cucumis sativus L. HOM05D004657 ORTHO05D005562 3.3e-82 309.7 407 48.9
THA.LOC104824872 Tarenaya hassleriana HOM05D004657 ORTHO05D005562 4.3e-82 309.3 260 62.3
Phvul.002G255300 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 7.3e-82 308.5 317 54.9
Lsat_1_v5_gn_5_43821 Lactuca sativa HOM05D004657 ORTHO05D005562 9.5e-82 308.1 387 50.6
VMungo0251G2127 Vigna mungo HOM05D004657 ORTHO05D005562 1.2e-81 307.8 340 52.1
arahy.Tifrunner.gnm1.ann1.4BU7T8 Arachis hypogaea HOM05D004657 ORTHO05D005562 2.8e-81 306.6 319 54.2
Atru.chr4.84 Acer truncatum HOM05D004657 ORTHO05D005562 4.7e-81 305.8 296 58.1
BcaNung00905 Brassica carinata HOM05D004657 ORTHO05D005562 4.7e-81 305.8 410 46.8
CAN.G480.1 Capsicum annuum HOM05D004657 ORTHO05D005562 4.7e-81 305.8 390 50.5
Lj4g0007261 Lotus japonicus HOM05D004657 ORTHO05D005562 4.7e-81 305.8 301 59.8
CSS0006663 Camellia sinensis var. sinensis HOM05D004657 ORTHO05D005562 8.0e-81 305.1 438 47.9
SalBow3G2946 Salvia bowleyana HOM05D004657 ORTHO05D005562 1.8e-80 303.9 213 74.2
Medtr8g090265 Medicago truncatula HOM05D004657 ORTHO05D005562 2.3e-80 303.5 309 54.4
unitig_88.g27724 Utricularia gibba HOM05D004657 ORTHO05D005562 6.8e-80 302.0 232 65.9
DCAR_011511 Daucus carota HOM05D004657 ORTHO05D005562 8.9e-80 301.6 233 67.0
Sed0024330 Sechium edule HOM05D004657 ORTHO05D005562 8.9e-80 301.6 391 48.8
Psat7g054320 Pisum sativum HOM05D004657 ORTHO05D005562 1.5e-79 300.8 249 61.4
Phvul.001G251700 Phaseolus vulgaris HOM05D004657 ORTHO05D005562 2.6e-79 300.1 393 48.9
C03p78370 Brassica napus HOM05D004657 ORTHO05D005562 3.4e-79 299.7 400 47.5
Psat5g089640 Pisum sativum HOM05D004657 ORTHO05D005562 4.4e-79 299.3 416 46.2
PSO541G4803 Papaver somniferum HOM05D004657 ORTHO05D005562 5.8e-79 298.9 243 63.0
Aqoxy6G00812 Aquilegia oxysepala HOM05D004657 ORTHO05D005562 2.2e-78 297.0 333 51.7
PSO781G0272 Papaver somniferum HOM05D004657 ORTHO05D005562 1.4e-77 294.3 315 55.9
Sc16g0005630 Simmondsia chinensis HOM05D004657 ORTHO05D005562 2.1e-73 280.4 238 58.4
TPR.G6250 Trifolium pratense HOM05D004657 ORTHO05D005562 4.7e-73 279.3 323 49.8
DCAR_001485 Daucus carota HOM05D004657 ORTHO05D005562 7.1e-69 265.4 337 49.3
Glyma.05G179100 Glycine max HOM05D004657 ORTHO05D005562 1.2e-68 264.6 469 40.7
MBI02_g08733_MAGBIO Magnolia biondii HOM05D004657 ORTHO05D005562 2.1e-68 263.8 309 49.5
Lj4g0017498 Lotus japonicus HOM05D004657 ORTHO05D005562 4.3e-66 256.1 442 43.7
SHI11535 Sapria himalayana HOM05D004657 ORTHO05D000023 1.3e-54 218.0 298 43.6
HPP92_016347 Vanilla planifolia HOM05D004657 ORTHO05D008789 2.4e-48 197.2 299 39.8
SEGI_28024 Sequoiadendron giganteum HOM05D004657 ORTHO05D005562 1.0e-43 181.8 242 40.5
ATR0564G070 Amborella trichopoda HOM05D004657 ORTHO05D005562 1.3e-43 181.4 241 41.1
Os08g0411300 Oryza sativa ssp. japonica HOM05D004657 ORTHO05D005562 4.3e-42 176.4 300 38.7
Zm00001eb001010 Zea mays HOM05D004657 ORTHO05D005562 9.0e-40 168.7 319 36.4
Mapoly0036s0106 Marchantia polymorpha HOM05D004657 ORTHO05D005562 1.7e-38 164.5 266 38.3
Actinidia36592 Actinidia chinensis HOM05D004657 ORTHO05D005562 1.4e-37 161.4 112 71.4
SMO012G0039 Selaginella moellendorffii HOM05D004657 ORTHO05D005562 6.7e-35 152.5 244 37.3
CDE12G0473 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.4e-32 144.8 174 50.0
AagrBONN_evm.TU.Sc2ySwM_368.2671 Anthoceros agrestis HOM05D004657 ORTHO05D005562 5.8e-31 139.4 259 37.5
Nitab4.5_0000104g0160 Nicotiana tabacum HOM05D004657 ORTHO05D005562 6.5e-30 136.0 326 32.5
Pp3c8_17900 Physcomitrium patens HOM05D004657 ORTHO05D005562 8.4e-30 135.6 247 33.6
Pp3c24_14210 Physcomitrium patens HOM05D004657 ORTHO05D005562 9.3e-29 132.1 279 33.3
TPR.G17843 Trifolium pratense HOM05D004657 ORTHO05D005562 3.0e-27 127.1 89 66.3
Zm00001eb119110 Zea mays HOM05D004657 ORTHO05D005562 3.3e-26 123.6 227 36.6
Zm00001eb168110 Zea mays HOM05D004657 ORTHO05D005562 1.7e-22 111.3 220 35.0
Oeu054841.2 Olea europaea HOM05D004657 ORTHO05D005562 3.6e-20 103.6 245 40.0
CBR_g45841 Chara braunii HOM05D004657 ORTHO05D005562 1.0e-19 102.1 253 27.3
Zm00001eb272140 Zea mays HOM05D004657 ORTHO05D005562 1.1e-18 98.6 160 38.1
CBR_g57642 Chara braunii HOM05D004657 ORTHO05D005562 5.3e-16 89.7 349 25.8
MD01G1028100 Malus domestica HOM05D004657 ORTHO05D005562 3.4e-15 87.0 153 41.8
Zm00001eb295260 Zea mays HOM05D004657 ORTHO05D005562 9.4e-13 79.0 158 34.8
Zm00001eb342160 Zea mays HOM05D004657 ORTHO05D005562 2.7e-12 77.4 189 32.8
Zm00001eb024090 Zea mays HOM05D004657 ORTHO05D005562 7.4e-10 69.3 108 39.8
Oeu002176.1 Olea europaea HOM05D004657 ORTHO05D005562 1.7e-09 68.2 43 62.8
Sed0008262 Sechium edule HOM05D004657 ORTHO05D005562 2.2e-09 67.8 141 39.0
Zm00001eb008600 Zea mays HOM05D004657 ORTHO05D005562 3.7e-09 67.0 285 27.4
CDE04G1361 Ceratophyllum demersum HOM05D001805 ORTHO05D001734 1.8e-08 64.7 131 37.4
Zm00001eb310250 Zea mays HOM05D004657 ORTHO05D005562 3.1e-08 63.9 130 33.1
Zm00001eb030060 Zea mays HOM05D004657 ORTHO05D005562 7.0e-08 62.8 105 39.0
Zm00001eb332070 Zea mays HOM05D004657 ORTHO05D005562 2.6e-07 60.8 56 46.4
Zm00001eb210920 Zea mays HOM05D004657 ORTHO05D005562 1.7e-06 58.2 184 29.3


User provided reference genes

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