Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g8633 Utricularia gibba HOM05D003263 ORTHO05D004801 0.0e+00 1493.8 752 100.0
MSTRG.3699 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1309.7 747 86.7
SalBow5G3125 Salvia bowleyana HOM05D003263 ORTHO05D004801 0.0e+00 1284.2 750 84.7
SGA_v2.0_scaffold2G00947 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1276.5 750 83.7
Oeu030292.1 Olea europaea HOM05D003263 ORTHO05D004801 0.0e+00 1273.1 777 80.8
MSTRG.15657 Avicennia marina HOM05D003263 ORTHO05D004801 0.0e+00 1265.4 750 83.2
CAN.G222.62 Capsicum annuum HOM05D003263 ORTHO05D004801 0.0e+00 1260.4 750 83.6
Migut.K00926 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1259.6 751 83.6
Peaxi162Scf00464g00325 Petunia axillaris HOM05D003263 ORTHO05D004801 0.0e+00 1248.8 749 82.8
Sopen11g006260 Solanum pennellii HOM05D003263 ORTHO05D004801 0.0e+00 1246.9 750 82.8
Solyc11g011470.2 Solanum lycopersicum HOM05D003263 ORTHO05D004801 0.0e+00 1244.2 751 82.6
PGSC0003DMG400013309 Solanum tuberosum HOM05D003263 ORTHO05D004801 0.0e+00 1241.5 750 82.5
Nitab4.5_0011135g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1240.7 749 82.5
Prupe.3G165400 Prunus persica HOM05D003263 ORTHO05D004801 0.0e+00 1237.6 754 81.3
Actinidia35722 Actinidia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1236.1 752 81.6
Potri.004G082800 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1235.7 750 81.9
MD09G1268900 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1234.6 755 81.9
Migut.H02232 Erythranthe guttata HOM05D003263 ORTHO05D004801 0.0e+00 1230.7 752 82.0
CiPaw.03G074100 Carya illinoinensis HOM05D003263 ORTHO05D004801 0.0e+00 1229.9 757 82.0
Ciclev10019002m.g Citrus clementina HOM05D003263 ORTHO05D004801 0.0e+00 1229.9 751 81.1
Atru.chr1.2038 Acer truncatum HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 751 81.2
MD17G1267300 Malus domestica HOM05D003263 ORTHO05D004801 0.0e+00 1229.2 755 80.9
Dinv19049 Davidia involucrata HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 752 80.7
Potri.017G136133 Populus trichocarpa HOM05D003263 ORTHO05D004801 0.0e+00 1227.6 750 81.1
HanXRQChr07g0191741 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1226.5 751 81.5
TWI77G0544 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1223.0 753 81.3
CSS0018871 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 0.0e+00 1222.6 751 81.4
ECA238G3173 Erigeron canadensis HOM05D003263 ORTHO05D004801 0.0e+00 1222.2 751 80.4
RcHm_v2.0_Chr3g0491991 Rosa chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1219.5 755 81.3
FAN23G0774 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1218.8 750 81.3
FAN26G0816 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 751 81.0
TWI74G0116 Tripterygium wilfordii HOM05D003263 ORTHO05D004801 0.0e+00 1216.8 753 80.9
VMungo1383G2082 Vigna mungo HOM05D003263 ORTHO05D004801 0.0e+00 1213.7 753 80.3
Cpa.g.sc116.77 Carica papaya HOM05D003263 ORTHO05D004801 0.0e+00 1213.0 751 79.6
Manes.02G078500 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1212.2 751 80.6
Sed0016313 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 752 80.3
TAR629G0765 Trochodendron aralioides HOM05D003263 ORTHO05D004801 0.0e+00 1210.3 756 79.8
arahy.Tifrunner.gnm1.ann1.AUXW6G Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 750 79.7
FvH4_1g30070 Fragaria vesca HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 751 80.7
Glyma.18G041700 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1209.9 752 79.9
Lj6g0025109 Lotus japonicus HOM05D003263 ORTHO05D004801 0.0e+00 1209.1 751 79.2
Eucgr.J01621 Eucalyptus grandis HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 752 79.4
Phvul.001G229000 Phaseolus vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1208.7 753 79.9
CANSAT56G4352 Cannabis sativa HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 754 80.1
Glyma.11G214800 Glycine max HOM05D003263 ORTHO05D004801 0.0e+00 1208.0 753 79.7
FAN19G0316 Fragaria x ananassa HOM05D003263 ORTHO05D004801 0.0e+00 1206.4 701 84.3
PGR042G3530 Punica granatum HOM05D003263 ORTHO05D004801 0.0e+00 1206.0 751 80.0
HanXRQChr14g0444641 Helianthus annuus HOM05D003263 ORTHO05D004801 0.0e+00 1205.3 750 80.5
Aqoxy3G04075 Aquilegia oxysepala HOM05D003263 ORTHO05D004801 0.0e+00 1202.6 747 79.9
ClCG05G010610 Citrullus lanatus HOM05D003263 ORTHO05D004801 0.0e+00 1202.2 753 79.8
CsaV3_3G017880 Cucumis sativus L. HOM05D003263 ORTHO05D004801 0.0e+00 1199.5 755 79.3
TPR.G23206 Trifolium pratense HOM05D003263 ORTHO05D004801 0.0e+00 1199.5 751 79.2
SGA_v2.0_scaffold108G30966 Striga asiatica HOM05D003263 ORTHO05D004801 0.0e+00 1198.0 751 79.5
Sed0005557 Sechium edule HOM05D003263 ORTHO05D004801 0.0e+00 1196.4 752 79.0
Gohir.D07G183900 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1195.3 753 79.2
Haze_14285 Corylus avellana HOM05D003263 ORTHO05D004801 0.0e+00 1194.1 751 79.8
MELO3C020331.2 Cucumis melo HOM05D003263 ORTHO05D004801 0.0e+00 1192.9 755 78.8
COL.COLO4_13315 Corchorus olitorius HOM05D003263 ORTHO05D004801 0.0e+00 1192.2 751 79.4
Ca_17086_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 0.0e+00 1191.8 752 78.9
DCAR_014159 Daucus carota HOM05D003263 ORTHO05D004801 0.0e+00 1191.4 751 79.4
PSO017G4553 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 749 78.4
Rhsim08G0019700 Rhododendron simsii HOM05D003263 ORTHO05D004801 0.0e+00 1190.6 804 74.5
Cfa007786 Carpinus fangiana HOM05D003263 ORTHO05D004801 0.0e+00 1189.1 751 79.8
QL02p059434 Quercus lobata HOM05D003263 ORTHO05D004801 0.0e+00 1189.1 751 78.6
Lalb_Chr18g0053541 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 752 78.3
PSO478G1645 Papaver somniferum HOM05D003263 ORTHO05D004801 0.0e+00 1187.2 749 78.1
Psat5g119880 Pisum sativum HOM05D003263 ORTHO05D004801 0.0e+00 1186.8 754 78.5
Duzib133G1400 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1185.6 753 78.8
Medtr3g065130 Medicago truncatula HOM05D003263 ORTHO05D004801 0.0e+00 1182.5 751 78.6
THA.LOC104805635 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1181.8 754 78.5
Gorai.001G204300 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1181.4 752 78.6
Lsat_1_v5_gn_3_63961 Lactuca sativa HOM05D003263 ORTHO05D004801 0.0e+00 1181.4 753 78.1
Duzib138G0925 Durio zibethinus HOM05D003263 ORTHO05D004801 0.0e+00 1181.0 752 78.3
Ah.10g032470 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1178.3 744 78.6
Thecc.04G063600 Theobroma cacao HOM05D003263 ORTHO05D004801 0.0e+00 1175.2 753 78.2
Gohir.A07G176600 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1174.5 752 77.9
Gorai.001G197100 Gossypium raimondii HOM05D003263 ORTHO05D004801 0.0e+00 1171.8 753 77.3
THA.LOC104822242 Tarenaya hassleriana HOM05D003263 ORTHO05D004801 0.0e+00 1170.6 754 77.2
Sc14g0006900 Simmondsia chinensis HOM05D003263 ORTHO05D004801 0.0e+00 1169.8 750 77.1
Ah.10g032480 Amaranthus hybridus HOM05D003263 ORTHO05D004801 0.0e+00 1168.3 750 77.7
AUR62037782 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1167.5 753 77.2
BcaB06g27086 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1166.4 752 76.6
CARHR215400 Cardamine hirsuta HOM05D003263 ORTHO05D004801 0.0e+00 1166.4 753 77.2
EL10Ac2g03207 Beta vulgaris HOM05D003263 ORTHO05D004801 0.0e+00 1164.4 754 77.1
A04p10660 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1163.7 752 76.5
arahy.Tifrunner.gnm1.ann1.ZZ0CH2 Arachis hypogaea HOM05D003263 ORTHO05D004801 0.0e+00 1163.3 842 70.9
C04p44380 Brassica napus HOM05D003263 ORTHO05D004801 0.0e+00 1163.3 752 76.3
AL1G43210 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1162.5 750 76.5
Hund13092 Selenicereus undatus HOM05D003263 ORTHO05D004801 0.0e+00 1162.5 702 80.3
Thhalv10027640m.g Eutrema salsugineum HOM05D003263 ORTHO05D004801 0.0e+00 1160.2 752 76.1
BraA04t16733Z Brassica rapa HOM05D003263 ORTHO05D004801 0.0e+00 1159.4 752 76.1
Zm00001eb216210 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1159.1 744 77.3
BcaC02g09578 Brassica carinata HOM05D003263 ORTHO05D004801 0.0e+00 1158.7 752 76.1
BolC4t26009H Brassica oleracea HOM05D003263 ORTHO05D004801 0.0e+00 1158.7 752 76.1
Manes.01G120700 Manihot esculenta HOM05D003263 ORTHO05D004801 0.0e+00 1157.9 751 77.4
Aa31LG9G17520 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1156.0 747 76.4
AT5G37510 Arabidopsis thaliana HOM05D003263 ORTHO05D004801 0.0e+00 1155.2 751 76.2
Carub.0007s3268 Capsella rubella HOM05D003263 ORTHO05D004801 0.0e+00 1155.2 751 76.0
Os03g0713400 Oryza sativa ssp. japonica HOM05D003263 ORTHO05D004801 0.0e+00 1152.9 711 79.5
Aa31LG9G17530 Aethionema arabicum HOM05D003263 ORTHO05D004801 0.0e+00 1152.1 746 76.4
Zm00001eb055050 Zea mays HOM05D003263 ORTHO05D004801 0.0e+00 1149.0 711 79.9
Cc07_g13220 Coffea canephora HOM05D003263 ORTHO05D004801 0.0e+00 1146.3 663 84.3
HPP92_020298 Vanilla planifolia HOM05D003263 ORTHO05D004801 0.0e+00 1145.2 728 77.2
AL7G46270 Arabidopsis lyrata HOM05D003263 ORTHO05D004801 0.0e+00 1137.1 784 73.0
CDE05G1320 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 0.0e+00 1131.3 731 76.9
Nitab4.5_0006562g0010 Nicotiana tabacum HOM05D003263 ORTHO05D004801 0.0e+00 1124.0 668 83.7
Lalb_Chr15g0085021 Lupinus albus HOM05D003263 ORTHO05D004801 0.0e+00 1115.5 751 74.8
AUR62042225 Chenopodium quinoa HOM05D003263 ORTHO05D004801 0.0e+00 1113.6 752 74.1
SHI30113 Sapria himalayana HOM05D003263 ORTHO05D004801 0.0e+00 1109.0 752 73.8
Gohir.D07G176300 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1101.3 663 81.1
Gohir.A07G170100 Gossypium hirsutum HOM05D003263 ORTHO05D004801 0.0e+00 1099.7 663 81.0
ATR0118G003 Amborella trichopoda HOM05D003263 ORTHO05D004801 0.0e+00 1082.8 752 73.1
vmacro18524 Vaccinium macrocarpon HOM05D003263 ORTHO05D004801 0.0e+00 1081.2 751 73.0
MBI19_g09384_MAGBIO Magnolia biondii HOM05D003263 ORTHO05D004801 2.1e-311 1072.0 1062 55.7
GSVIVG01030914001 Vitis vinifera HOM05D003263 ORTHO05D004801 5.6e-309 1063.9 663 79.9
CDE05G1041 Ceratophyllum demersum HOM05D003263 ORTHO05D004801 2.8e-308 1061.6 731 72.5
Dinv28178 Davidia involucrata HOM05D003263 ORTHO05D004801 2.8e-292 1008.4 753 69.1
Nn4g24447 Nelumbo nucifera HOM05D003263 ORTHO05D004801 8.2e-292 1006.9 628 80.3
SMO331G0029 Selaginella moellendorffii HOM05D003263 ORTHO05D004801 3.0e-278 961.8 685 67.2
Mapoly0153s0030 Marchantia polymorpha HOM05D003263 ORTHO05D004801 8.7e-278 960.3 684 68.4
AagrBONN_evm.TU.Sc2ySwM_228.2430 Anthoceros agrestis HOM05D003263 ORTHO05D004801 9.7e-277 956.8 683 68.7
Pp3c19_19270 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.4e-274 948.3 696 67.7
Pp3c1_34100 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.4e-274 948.3 681 68.7
Pp3c1_34110 Physcomitrium patens HOM05D003263 ORTHO05D004801 3.4e-274 948.3 681 68.7
Pp3c1_34140 Physcomitrium patens HOM05D003263 ORTHO05D004801 1.7e-273 946.0 681 68.6
arahy.Tifrunner.gnm1.ann1.5H82NF Arachis hypogaea HOM05D003263 ORTHO05D004801 2.2e-252 875.9 600 74.2
arahy.Tifrunner.gnm1.ann1.RIP12T Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-248 863.6 600 73.7
CBR_g6354 Chara braunii HOM05D003263 ORTHO05D004801 5.2e-246 854.7 684 61.4
Cre12.g535950 Chlamydomonas reinhardtii HOM05D003263 ORTHO05D004801 6.8e-230 801.2 684 57.7
MCO08G340 Micromonas commoda HOM05D003263 ORTHO05D004801 9.5e-224 780.8 709 56.4
PRCOL_00000346 Prasinoderma coloniale HOM05D003263 ORTHO05D004801 3.0e-209 732.6 683 56.5
TAR371G0371 Trochodendron aralioides HOM05D003263 ORTHO05D004801 2.9e-196 689.5 657 58.4
Cfa025667 Carpinus fangiana HOM05D003263 ORTHO05D004801 6.4e-196 688.3 682 53.4
Haze_26802 Corylus avellana HOM05D003263 ORTHO05D004801 1.3e-169 600.9 708 46.6
Oeu062704.1 Olea europaea HOM05D003263 ORTHO05D004801 4.2e-163 579.3 325 88.0
SpUN1596_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 3.2e-155 553.1 305 85.2
arahy.Tifrunner.gnm1.ann1.HY7M04 Arachis hypogaea HOM05D000164 ORTHO05D004801 9.4e-155 551.6 360 73.6
Thecc.K0008100 Theobroma cacao HOM05D003263 ORTHO05D004801 9.1e-134 481.9 306 81.7
arahy.Tifrunner.gnm1.ann1.Z93KCA Arachis hypogaea HOM05D003263 ORTHO05D004801 1.7e-132 477.6 301 79.7
Oeu062706.1 Olea europaea HOM05D003263 ORTHO05D004801 6.8e-129 465.7 306 74.5
SpUn1854_0010 Schrenkiella parvula HOM05D003263 ORTHO05D004801 7.3e-115 419.1 294 71.1
Potri.017G136950 Populus trichocarpa HOM05D003263 ORTHO05D004801 8.0e-106 389.0 236 79.7
Sabra17G0054900 Salix brachista HOM05D003263 ORTHO05D004801 4.1e-94 350.1 242 70.7
Thecc.K0008200 Theobroma cacao HOM05D003263 ORTHO05D004801 3.1e-89 334.0 219 74.0
CSS0049015 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 7.1e-86 322.8 305 59.0
CSS0039899 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 6.0e-85 319.7 305 58.4
Eucgr.J01637 Eucalyptus grandis HOM05D003263 ORTHO05D004801 4.8e-82 310.1 228 71.5
Oeu039332.1 Olea europaea HOM05D003263 ORTHO05D004801 2.6e-72 277.7 172 78.5
Haze_27240 Corylus avellana HOM05D003263 ORTHO05D004801 6.2e-66 256.5 367 39.8
arahy.Tifrunner.gnm1.ann1.VKQW11 Arachis hypogaea HOM05D003263 ORTHO05D004801 9.0e-65 252.7 131 93.9
MD16G1264300 Malus domestica HOM05D003263 ORTHO05D004801 1.6e-61 241.9 260 53.1
Actinidia28797 Actinidia chinensis HOM05D003263 ORTHO05D004801 1.1e-59 235.7 405 41.7
SEGI_21193 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.9e-59 235.0 161 73.9
arahy.Tifrunner.gnm1.ann1.SN393R Arachis hypogaea HOM05D003263 ORTHO05D004801 1.1e-57 229.2 119 93.3
HanXRQChr17g0559491 Helianthus annuus HOM05D003263 ORTHO05D004801 5.0e-47 193.7 142 73.2
SEGI_05320 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 1.5e-43 182.2 154 63.0
Sabra17G0112400 Salix brachista HOM05D003263 ORTHO05D003497 3.4e-40 171.0 122 69.7
SEGI_04560 Sequoiadendron giganteum HOM05D003263 ORTHO05D004801 6.5e-39 166.8 162 59.3
VMungo0647G1524 Vigna mungo HOM05D003263 ORTHO05D004801 2.5e-38 164.9 105 71.4
QL04p097132 Quercus lobata HOM05D003263 ORTHO05D000041 4.8e-34 150.6 93 75.3
Migut.M00197 Erythranthe guttata HOM05D003263 ORTHO05D004801 8.2e-34 149.8 112 69.6
CBR_g44347 Chara braunii HOM05D003263 ORTHO05D004801 1.8e-33 148.7 142 50.7
Ca_19082_v3 Cicer arietinum L. HOM05D003263 ORTHO05D004801 9.4e-30 136.3 83 79.5
Hund13091 Selenicereus undatus HOM05D003263 ORTHO05D004801 4.4e-27 127.5 105 60.0
Cc04_g05630 Coffea canephora HOM05D003263 ORTHO05D004801 6.3e-26 123.6 138 52.2
Hma1.2p1_1425F.1_g282850 Hydrangea macrophylla HOM05D003263 ORTHO05D004801 1.6e-24 119.0 99 64.6
MD16G1264400 Malus domestica HOM05D003263 ORTHO05D004801 4.5e-24 117.5 66 83.3
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 2.5e-22 111.7 230 30.4
CSS0022568 Camellia sinensis var. sinensis HOM05D003263 ORTHO05D004801 3.0e-20 104.8 139 48.9
QL08p053439 Quercus lobata HOM05D003263 ORTHO05D004801 1.7e-15 89.0 50 78.0
TPR.G18971 Trifolium pratense HOM05D003263 ORTHO05D004801 1.9e-14 85.5 56 75.0
SEGI_40032 Sequoiadendron giganteum HOM05D003263 ORTHO05D024792 1.2e-11 76.3 42 85.7
TPR.G11234 Trifolium pratense HOM05D003263 ORTHO05D004801 1.2e-11 76.3 42 88.1
Cc00_g06720 Coffea canephora HOM05D003263 ORTHO05D004801 2.8e-10 71.6 38 89.5


User provided reference genes

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