Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g8624 Utricularia gibba HOM05D003795 ORTHO05D004308 4.3e-265 917.5 495 100.0
SalBow5G4136 Salvia bowleyana HOM05D003795 ORTHO05D004308 1.3e-67 261.5 535 43.0
unitig_0.g1678 Utricularia gibba HOM05D003795 ORTHO05D004308 6.8e-61 239.2 579 38.5
SGA_v2.0_scaffold199G41250 Striga asiatica HOM05D003795 ORTHO05D004308 9.8e-60 235.3 599 38.6
Nitab4.5_0000483g0170 Nicotiana tabacum HOM05D003795 ORTHO05D004308 1.1e-58 231.9 610 38.5
Nitab4.5_0012787g0030 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.0e-57 227.6 639 37.7
Oeu012502.2 Olea europaea HOM05D003795 ORTHO05D004308 2.7e-57 227.3 560 40.5
CAN.G809.93 Capsicum annuum HOM05D003795 ORTHO05D004308 9.5e-55 218.8 652 36.0
unitig_748.g7017 Utricularia gibba HOM05D003795 ORTHO05D004308 2.8e-54 217.2 568 38.4
PGSC0003DMG400019727 Solanum tuberosum HOM05D003795 ORTHO05D004308 1.5e-52 211.5 585 37.9
Peaxi162Scf00344g00199 Petunia axillaris HOM05D003795 ORTHO05D004308 5.8e-52 209.5 585 37.9
Migut.K01203 Erythranthe guttata HOM05D003795 ORTHO05D004308 2.4e-50 204.1 630 35.9
MSTRG.15619 Avicennia marina HOM05D003795 ORTHO05D004308 9.2e-50 202.2 648 36.3
Oeu041416.1 Olea europaea HOM05D003795 ORTHO05D004308 4.3e-47 193.4 566 37.1
Gohir.A11G170300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 2.8e-46 190.7 583 35.7
HanXRQChr14g0443551 Helianthus annuus HOM05D003795 ORTHO05D004308 3.6e-46 190.3 595 37.0
Sopen02g026080 Solanum pennellii HOM05D003795 ORTHO05D004308 5.2e-45 186.4 604 34.8
MSTRG.3665 Avicennia marina HOM05D003795 ORTHO05D004308 1.5e-44 184.9 657 34.4
Solyc02g081440.4 Solanum lycopersicum HOM05D003795 ORTHO05D004308 1.5e-44 184.9 609 34.6
Gohir.D11G177300 Gossypium hirsutum HOM05D003795 ORTHO05D004308 4.4e-44 183.3 641 33.9
Dinv28269 Davidia involucrata HOM05D003795 ORTHO05D004308 5.8e-44 183.0 703 32.0
Oeu060824.1 Olea europaea HOM05D003795 ORTHO05D004308 7.5e-44 182.6 548 34.3
VMungo0647G0124 Vigna mungo HOM05D003795 ORTHO05D004308 1.3e-43 181.8 652 33.3
Duzib138G1939 Durio zibethinus HOM05D003795 ORTHO05D004308 1.7e-43 181.4 607 34.9
FvH4_5g39710 Fragaria vesca HOM05D003795 ORTHO05D004308 1.4e-42 178.3 653 33.5
FAN08G2134 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.9e-42 177.9 653 33.5
Phvul.008G243000 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 1.9e-42 177.9 625 32.8
Gorai.007G189400 Gossypium raimondii HOM05D003795 ORTHO05D004308 3.2e-42 177.2 640 33.4
Phvul.006G083400 Phaseolus vulgaris HOM05D003795 ORTHO05D004308 7.0e-42 176.0 624 32.1
Ca_15099_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 1.2e-41 175.3 606 31.5
FAN18G0662 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-41 175.3 653 33.7
FAN18G1276 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.2e-41 175.3 653 33.7
DCAR_014135 Daucus carota HOM05D003795 ORTHO05D004308 2.7e-41 174.1 595 32.9
Lj2A509T28 Lonicera japonica HOM05D003795 ORTHO05D004308 2.7e-41 174.1 686 33.4
GSVIVG01033197001 Vitis vinifera HOM05D003795 ORTHO05D004308 2.7e-41 174.1 595 34.6
CSS0049356 Camellia sinensis var. sinensis HOM05D003795 ORTHO05D004308 4.6e-41 173.3 675 33.6
TWI74G0163 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 2.3e-40 171.0 642 32.9
Glyma.18G048000 Glycine max HOM05D003795 ORTHO05D004308 3.9e-40 170.2 699 31.6
Thecc.04G056400 Theobroma cacao HOM05D003795 ORTHO05D004308 5.1e-40 169.9 617 34.2
VMungo0540G0009 Vigna mungo HOM05D003795 ORTHO05D004308 8.6e-40 169.1 690 31.4
TWI77G0024 Tripterygium wilfordii HOM05D003795 ORTHO05D004308 1.1e-39 168.7 702 32.1
Thhalv10018468m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 9.5e-39 165.6 512 36.3
Potri.012G145200 Populus trichocarpa HOM05D003795 ORTHO05D004308 9.5e-39 165.6 715 31.2
AL2G22840 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.2e-38 165.2 479 35.5
RcHm_v2.0_Chr7g0242011 Rosa chinensis HOM05D003795 ORTHO05D004308 1.6e-38 164.9 664 31.9
Manes.02G083300 Manihot esculenta HOM05D003795 ORTHO05D004308 4.7e-38 163.3 635 32.3
Peaxi162Scf00784g00029 Petunia axillaris HOM05D003795 ORTHO05D004308 6.2e-38 162.9 603 32.8
THA.LOC104805668 Tarenaya hassleriana HOM05D003795 ORTHO05D004308 6.2e-38 162.9 588 33.0
FAN04G0804 Fragaria x ananassa HOM05D003795 ORTHO05D004308 1.4e-37 161.8 611 33.1
Lsat_1_v5_gn_2_72041 Lactuca sativa HOM05D003795 ORTHO05D004308 1.4e-37 161.8 594 32.3
Sabra15G0156700 Salix brachista HOM05D003795 ORTHO05D004308 8.9e-37 159.1 685 31.2
Psat2g048640 Pisum sativum HOM05D003795 ORTHO05D004308 1.2e-36 158.7 579 34.2
QL02p055515 Quercus lobata HOM05D003795 ORTHO05D004308 2.0e-36 157.9 579 32.8
AT1G65710 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.6e-36 157.5 483 35.2
HPP92_013140 Vanilla planifolia HOM05D003795 ORTHO05D004308 2.6e-36 157.5 537 34.8
Carub.0002s1153 Capsella rubella HOM05D003795 ORTHO05D004308 4.4e-36 156.8 451 36.8
Nitab4.5_0002297g0070 Nicotiana tabacum HOM05D003795 ORTHO05D004308 5.8e-36 156.4 580 33.6
Rhsim10G0186600 Rhododendron simsii HOM05D003795 ORTHO05D004308 7.5e-36 156.0 536 34.0
Glyma.11G202800 Glycine max HOM05D003795 ORTHO05D004308 9.9e-36 155.6 627 31.9
Sed0021341 Sechium edule HOM05D003795 ORTHO05D004308 9.9e-36 155.6 688 31.5
ECA238G3337 Erigeron canadensis HOM05D003795 ORTHO05D004308 1.3e-35 155.2 550 32.9
Sabra12G0109200 Salix brachista HOM05D003795 ORTHO05D004308 1.3e-35 155.2 583 32.9
QL02p056567 Quercus lobata HOM05D003795 ORTHO05D004308 1.7e-35 154.8 676 31.4
Nitab4.5_0008083g0010 Nicotiana tabacum HOM05D003795 ORTHO05D004308 2.9e-35 154.1 589 33.8
Zm00001eb427110 Zea mays HOM05D003795 ORTHO05D004308 3.7e-35 153.7 501 35.7
Sp5g20650 Schrenkiella parvula HOM05D003795 ORTHO05D004308 6.4e-35 152.9 532 32.7
Haze_14040 Corylus avellana HOM05D003795 ORTHO05D004308 8.3e-35 152.5 650 31.1
CsaV3_5G024360 Cucumis sativus L. HOM05D003795 ORTHO05D004308 1.1e-34 152.1 703 30.7
LjContig00141g0025814 Lotus japonicus HOM05D003795 ORTHO05D004308 1.9e-34 151.4 680 29.6
CARHR057540 Cardamine hirsuta HOM05D003795 ORTHO05D004308 5.4e-34 149.8 484 34.5
Cpa.g.sc108.20 Carica papaya HOM05D003795 ORTHO05D004308 1.2e-33 148.7 651 31.3
COL.COLO4_13440 Corchorus olitorius HOM05D003795 ORTHO05D004308 1.6e-33 148.3 496 35.9
Os04g0528600 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 2.7e-33 147.5 473 33.8
Manes.01G125700 Manihot esculenta HOM05D003795 ORTHO05D004308 3.5e-33 147.1 680 30.7
Ca_05735_v3 Cicer arietinum L. HOM05D003795 ORTHO05D004308 7.8e-33 146.0 550 32.7
HanXRQChr12g0365641 Helianthus annuus HOM05D003795 ORTHO05D004308 7.8e-33 146.0 543 32.8
Ciclev10011149m.g Citrus clementina HOM05D003795 ORTHO05D004308 1.0e-32 145.6 708 29.2
MELO3C025107.2 Cucumis melo HOM05D003795 ORTHO05D004308 1.0e-32 145.6 702 30.2
Cc07_g12620 Coffea canephora HOM05D003795 ORTHO05D004308 1.7e-32 144.8 660 30.6
vmacro20445 Vaccinium macrocarpon HOM05D003795 ORTHO05D004308 2.3e-32 144.4 668 31.3
Potri.015G147900 Populus trichocarpa HOM05D003795 ORTHO05D004308 3.9e-32 143.7 751 30.2
PSO063G2224 Papaver somniferum HOM05D003795 ORTHO05D004308 5.1e-32 143.3 548 31.6
Glyma.14G207900 Glycine max HOM05D003795 ORTHO05D004308 1.5e-31 141.7 603 31.0
TAR629G1700 Trochodendron aralioides HOM05D003795 ORTHO05D004308 1.5e-31 141.7 410 36.6
PSO782G2347 Papaver somniferum HOM05D003795 ORTHO05D004308 3.3e-31 140.6 530 31.9
arahy.Tifrunner.gnm1.ann1.SLU9BZ Arachis hypogaea HOM05D003795 ORTHO05D004308 2.8e-30 137.5 710 28.9
CANSAT78G1023 Cannabis sativa HOM05D003795 ORTHO05D004308 3.6e-30 137.1 602 30.4
Aqoxy3G04352 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 8.1e-30 136.0 629 29.7
Lj6g0018352 Lotus japonicus HOM05D003795 ORTHO05D004308 1.1e-29 135.6 599 30.9
arahy.Tifrunner.gnm1.ann1.686QXT Arachis hypogaea HOM05D003795 ORTHO05D004308 3.1e-29 134.0 714 28.9
CiPaw.03G010000 Carya illinoinensis HOM05D003795 ORTHO05D004308 5.2e-29 133.3 568 29.2
ClCG01G008410 Citrullus lanatus HOM05D003795 ORTHO05D004308 8.9e-29 132.5 591 31.0
Hma1.2p1_0085F.1_g043870 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 8.9e-29 132.5 603 31.0
TPR.G15394 Trifolium pratense HOM05D003795 ORTHO05D004308 1.2e-28 132.1 646 29.1
Psat5g144840 Pisum sativum HOM05D003795 ORTHO05D004308 1.5e-28 131.7 507 32.5
AT5G37010 Arabidopsis thaliana HOM05D003795 ORTHO05D004308 2.6e-28 131.0 613 30.3
Glyma.02G239000 Glycine max HOM05D003795 ORTHO05D004308 2.6e-28 131.0 655 31.3
Lalb_Chr18g0053951 Lupinus albus HOM05D003795 ORTHO05D004308 2.6e-28 131.0 603 29.9
Zm00001eb075920 Zea mays HOM05D003795 ORTHO05D004308 4.4e-28 130.2 534 31.5
Medtr5g076140 Medicago truncatula HOM05D003795 ORTHO05D004308 7.6e-28 129.4 606 30.0
BcaB04g16989 Brassica carinata HOM05D003795 ORTHO05D004308 2.2e-27 127.9 490 32.2
AL7G45860 Arabidopsis lyrata HOM05D003795 ORTHO05D004308 1.4e-26 125.2 609 30.4
TPR.G37433 Trifolium pratense HOM05D003795 ORTHO05D004308 1.4e-26 125.2 668 29.6
Aa31LG2G10060 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.9e-26 124.8 647 28.9
Eucgr.J01649 Eucalyptus grandis HOM05D003795 ORTHO05D004308 5.4e-26 123.2 400 34.0
CAN.G304.8 Capsicum annuum HOM05D003795 ORTHO05D004308 7.1e-26 122.9 569 30.4
Ah.04g162800 Amaranthus hybridus HOM05D003795 ORTHO05D004308 9.2e-26 122.5 631 30.6
Zm00001eb185660 Zea mays HOM05D003795 ORTHO05D004308 9.2e-26 122.5 502 32.5
CARHR216000 Cardamine hirsuta HOM05D003795 ORTHO05D004308 1.2e-25 122.1 601 31.6
Medtr3g063210 Medicago truncatula HOM05D003795 ORTHO05D004308 1.2e-25 122.1 647 29.8
Sp7g05490 Schrenkiella parvula HOM05D003795 ORTHO05D004308 4.6e-25 120.2 634 27.9
A08p00830 Brassica napus HOM05D003795 ORTHO05D004308 6.0e-25 119.8 463 32.2
Nn4g24995 Nelumbo nucifera HOM05D003795 ORTHO05D004308 7.8e-25 119.4 610 30.2
BcaC01g01477 Brassica carinata HOM05D003795 ORTHO05D004308 1.0e-24 119.0 409 33.7
C03p92420 Brassica napus HOM05D003795 ORTHO05D004308 1.0e-24 119.0 409 33.7
Ah.06g191370 Amaranthus hybridus HOM05D003795 ORTHO05D004308 2.3e-24 117.9 608 29.9
Hund22224 Selenicereus undatus HOM05D003795 ORTHO05D004308 3.0e-24 117.5 626 30.5
MBI06_g17214_MAGBIO Magnolia biondii HOM05D003795 ORTHO05D004308 6.6e-24 116.3 560 30.2
BolC3t21550H Brassica oleracea HOM05D003795 ORTHO05D004308 1.5e-23 115.2 397 33.5
PGSC0003DMG400021472 Solanum tuberosum HOM05D003795 ORTHO05D004308 3.3e-23 114.0 561 31.2
BcaB06g27061 Brassica carinata HOM05D003795 ORTHO05D004308 9.6e-23 112.5 594 29.6
Actinidia32996 Actinidia chinensis HOM05D003795 ORTHO05D004308 1.6e-22 111.7 375 32.0
Aa31LG9G17690 Aethionema arabicum HOM05D003795 ORTHO05D004308 1.6e-22 111.7 661 27.2
BcaC02g09547 Brassica carinata HOM05D003795 ORTHO05D004308 2.8e-22 110.9 617 28.2
Sopen02g011820 Solanum pennellii HOM05D003795 ORTHO05D004308 4.7e-22 110.2 558 29.7
Carub.0007s3228 Capsella rubella HOM05D003795 ORTHO05D004308 6.2e-22 109.8 529 31.0
PGR042G3398 Punica granatum HOM05D003795 ORTHO05D004308 8.1e-22 109.4 646 28.0
Thhalv10018248m.g Eutrema salsugineum HOM05D003795 ORTHO05D004308 1.1e-21 109.0 638 28.2
Nn4g24993 Nelumbo nucifera HOM05D003795 ORTHO05D004308 1.1e-21 109.0 575 28.5
BolC4t25981H Brassica oleracea HOM05D003795 ORTHO05D004308 1.8e-21 108.2 618 27.7
C04p43990 Brassica napus HOM05D003795 ORTHO05D004308 2.6e-20 104.4 619 27.6
Solyc02g036460.3 Solanum lycopersicum HOM05D003795 ORTHO05D004308 7.6e-20 102.8 569 29.2
PGSC0003DMG402019715 Solanum tuberosum HOM05D003795 ORTHO05D004308 9.9e-20 102.4 204 42.2
A04p10490 Brassica napus HOM05D003795 ORTHO05D004308 1.3e-19 102.1 349 33.2
Dinv19094 Davidia involucrata HOM05D003795 ORTHO05D004308 1.7e-19 101.7 254 39.4
MD12G1074700 Malus domestica HOM05D003795 ORTHO05D004308 4.2e-18 97.1 456 30.3
Sabra16G0322500 Salix brachista HOM05D003795 ORTHO05D004308 4.2e-18 97.1 323 34.1
Atru.chr1.2190 Acer truncatum HOM05D003795 ORTHO05D004308 9.3e-18 95.9 569 28.3
BraA08t32141Z Brassica rapa HOM05D003795 ORTHO05D004308 1.0e-16 92.4 373 30.8
Hma1.2p1_0034F.1_g021500 Hydrangea macrophylla HOM05D003795 ORTHO05D004308 1.3e-16 92.0 710 25.6
Oeu012503.1 Olea europaea HOM05D003795 ORTHO05D004308 1.7e-16 91.7 241 38.6
Lsat_1_v5_gn_8_114961 Lactuca sativa HOM05D003795 ORTHO05D004308 2.3e-16 91.3 443 29.6
Sc20g0000860 Simmondsia chinensis HOM05D003795 ORTHO05D004308 6.6e-16 89.7 563 28.4
CDE07G0419 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 8.7e-16 89.4 457 29.3
Actinidia22883 Actinidia chinensis HOM05D003795 ORTHO05D004308 2.5e-15 87.8 524 29.8
CDE08G0767 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.3e-14 85.5 570 26.1
Aqoxy2G03712 Aquilegia oxysepala HOM05D003795 ORTHO05D004308 4.8e-14 83.6 194 36.1
VMungo1215G2457 Vigna mungo HOM05D003795 ORTHO05D004308 1.4e-13 82.0 242 35.5
CDE04G0398 Ceratophyllum demersum HOM05D003795 ORTHO05D004308 1.8e-13 81.6 691 24.9
Lalb_Chr10g0103891 Lupinus albus HOM05D003795 ORTHO05D004308 2.4e-13 81.3 279 32.6
HanXRQChr09g0258951 Helianthus annuus HOM05D003795 ORTHO05D004308 1.3e-11 75.5 216 34.3
ECA232G0457 Erigeron canadensis HOM05D003795 ORTHO05D004308 4.9e-11 73.6 350 30.3
EL10Ac4g08850 Beta vulgaris HOM05D003795 ORTHO05D004308 8.4e-11 72.8 665 25.4
Prupe.7G058700 Prunus persica HOM05D003795 ORTHO05D004308 8.4e-11 72.8 296 30.4
VMungo1383G0923 Vigna mungo HOM05D003795 ORTHO05D004308 3.2e-10 70.9 85 54.1
Os02g0638200 Oryza sativa ssp. japonica HOM05D003795 ORTHO05D004308 1.6e-09 68.6 180 35.6


User provided reference genes

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