Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g8118 Utricularia gibba HOM05D005118 ORTHO05D006038 4.2e-178 627.9 306 100.0
SalBow3G3316 Salvia bowleyana HOM05D005118 ORTHO05D006038 5.4e-101 371.7 306 58.8
Migut.J01020 Erythranthe guttata HOM05D005118 ORTHO05D006038 1.3e-99 367.1 299 62.5
Oeu056875.2 Olea europaea HOM05D005118 ORTHO05D006038 4.4e-95 352.1 304 56.9
Sopen09g004710 Solanum pennellii HOM05D005118 ORTHO05D006038 9.6e-90 334.3 311 53.7
Solyc09g009960.3 Solanum lycopersicum HOM05D005118 ORTHO05D006038 1.8e-88 330.1 311 53.4
Rhsim03G0072700 Rhododendron simsii HOM05D005118 ORTHO05D006038 2.0e-87 326.6 303 54.8
CAN.G397.66 Capsicum annuum HOM05D005118 ORTHO05D006038 9.9e-87 324.3 314 52.2
Nitab4.5_0001933g0040 Nicotiana tabacum HOM05D005118 ORTHO05D006038 9.9e-87 324.3 321 51.7
Peaxi162Scf00102g00213 Petunia axillaris HOM05D005118 ORTHO05D006038 1.3e-86 323.9 317 53.6
Eucgr.A02654 Eucalyptus grandis HOM05D005118 ORTHO05D006038 1.4e-85 320.5 304 54.3
CSS0000835 Camellia sinensis var. sinensis HOM05D005118 ORTHO05D006038 7.1e-85 318.2 286 54.2
Nn2g14484 Nelumbo nucifera HOM05D005118 ORTHO05D006038 1.6e-84 317.0 309 50.5
TPR.G2549 Trifolium pratense HOM05D005118 ORTHO05D006038 2.1e-84 316.6 299 51.5
QL05p009399 Quercus lobata HOM05D005118 ORTHO05D006038 4.6e-84 315.5 326 49.7
GSVIVG01016776001 Vitis vinifera HOM05D005118 ORTHO05D006038 4.6e-84 315.5 305 52.8
COL.COLO4_29702 Corchorus olitorius HOM05D005118 ORTHO05D006038 1.7e-83 313.5 309 50.2
TWI77G0553 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 8.7e-83 311.2 306 51.3
Psat6g079520 Pisum sativum HOM05D005118 ORTHO05D006038 2.5e-82 309.7 302 52.0
Sabra06G0162900 Salix brachista HOM05D005118 ORTHO05D006038 2.5e-82 309.7 305 50.5
CiPaw.09G015400 Carya illinoinensis HOM05D005118 ORTHO05D006038 4.3e-82 308.9 305 49.5
Prupe.7G104300 Prunus persica HOM05D005118 ORTHO05D006038 4.3e-82 308.9 311 52.4
Oeu017686.1 Olea europaea HOM05D005118 ORTHO05D006038 7.3e-82 308.1 309 52.4
FvH4_6g19140 Fragaria vesca HOM05D005118 ORTHO05D006038 2.8e-81 306.2 309 52.8
TAR365G0960 Trochodendron aralioides HOM05D005118 ORTHO05D006038 2.8e-81 306.2 310 48.4
Aqoxy3G03420 Aquilegia oxysepala HOM05D005118 ORTHO05D006038 4.8e-81 305.4 303 50.2
Medtr8g095460 Medicago truncatula HOM05D005118 ORTHO05D006038 4.8e-81 305.4 300 50.0
FAN14G1754 Fragaria x ananassa HOM05D005118 ORTHO05D006038 8.1e-81 304.7 309 52.4
Medtr1g059790 Medicago truncatula HOM05D005118 ORTHO05D006038 1.4e-80 303.9 299 49.5
FAN05G3536 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.1e-80 302.8 305 52.1
FAN09G1525 Fragaria x ananassa HOM05D005118 ORTHO05D006038 3.1e-80 302.8 311 51.8
Sed0011362 Sechium edule HOM05D005118 ORTHO05D006038 3.1e-80 302.8 305 49.8
Lalb_Chr10g0096391 Lupinus albus HOM05D005118 ORTHO05D006038 5.3e-80 302.0 303 48.8
RcHm_v2.0_Chr3g0474251 Rosa chinensis HOM05D005118 ORTHO05D006038 5.3e-80 302.0 298 53.7
FAN02G2546 Fragaria x ananassa HOM05D005118 ORTHO05D006038 1.2e-79 300.8 311 51.4
DCAR_013399 Daucus carota HOM05D005118 ORTHO05D006038 1.5e-79 300.4 315 50.2
Glyma.13G154600 Glycine max HOM05D005118 ORTHO05D006038 2.0e-79 300.1 301 49.2
ClCG08G004490 Citrullus lanatus HOM05D005118 ORTHO05D006038 4.5e-79 298.9 303 49.5
Ca_00895_v3 Cicer arietinum L. HOM05D005118 ORTHO05D006038 7.6e-79 298.1 298 48.7
CsaV3_6G003860 Cucumis sativus L. HOM05D005118 ORTHO05D006038 7.6e-79 298.1 305 50.2
Thecc.05G091100 Theobroma cacao HOM05D005118 ORTHO05D006038 7.6e-79 298.1 311 48.9
MBI14_g17373_MAGBIO Magnolia biondii HOM05D005118 ORTHO05D006038 9.9e-79 297.7 302 48.3
Gorai.002G239100 Gossypium raimondii HOM05D005118 ORTHO05D006038 1.7e-78 297.0 311 48.2
MELO3C011647.2 Cucumis melo HOM05D005118 ORTHO05D006038 3.8e-78 295.8 303 48.8
Atru.chr8.1769 Acer truncatum HOM05D005118 ORTHO05D006038 4.9e-78 295.4 308 49.0
PSO782G2273 Papaver somniferum HOM05D005118 ORTHO05D006038 4.9e-78 295.4 314 48.1
arahy.Tifrunner.gnm1.ann1.72V09J Arachis hypogaea HOM05D005118 ORTHO05D006038 6.4e-78 295.0 311 46.3
arahy.Tifrunner.gnm1.ann1.W1QNQS Arachis hypogaea HOM05D005118 ORTHO05D006038 6.4e-78 295.0 311 46.3
Gohir.D01G195000 Gossypium hirsutum HOM05D005118 ORTHO05D006038 6.4e-78 295.0 311 47.9
CANSAT64G1535 Cannabis sativa HOM05D005118 ORTHO05D006038 1.9e-77 293.5 294 50.0
Lj5g0005733 Lotus japonicus HOM05D005118 ORTHO05D006038 2.4e-77 293.1 300 48.7
PSO063G5626 Papaver somniferum HOM05D005118 ORTHO05D006038 3.2e-77 292.7 304 48.7
Ciclev10011946m.g Citrus clementina HOM05D005118 ORTHO05D006038 4.2e-77 292.4 334 47.3
CARHR145210 Cardamine hirsuta HOM05D005118 ORTHO05D006038 5.4e-77 292.0 284 51.8
AUR62006198 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.7e-76 289.7 301 49.5
AL3G23010 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 4.6e-76 288.9 290 49.3
Gohir.A01G205500 Gossypium hirsutum HOM05D005118 ORTHO05D006038 6.0e-76 288.5 305 47.5
Rhsim03G0074200 Rhododendron simsii HOM05D005118 ORTHO05D006038 7.9e-76 288.1 296 50.7
ECA247G3083 Erigeron canadensis HOM05D005118 ORTHO05D006038 1.8e-75 287.0 282 53.2
MD12G1027200 Malus domestica HOM05D005118 ORTHO05D006038 1.8e-75 287.0 296 51.0
Sp3g09700 Schrenkiella parvula HOM05D005118 ORTHO05D006038 3.9e-75 285.8 291 49.5
C05p56660 Brassica napus HOM05D005118 ORTHO05D006038 6.7e-75 285.0 289 50.5
BolC5t34331H Brassica oleracea HOM05D005118 ORTHO05D006038 6.7e-75 285.0 289 50.5
VMungo1309G0892 Vigna mungo HOM05D005118 ORTHO05D006038 6.7e-75 285.0 311 44.7
Carub.0005s0168 Capsella rubella HOM05D005118 ORTHO05D006038 1.1e-74 284.3 293 50.5
TWI53G1403 Tripterygium wilfordii HOM05D005118 ORTHO05D006038 1.1e-74 284.3 275 52.4
Thhalv10018973m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.5e-74 283.9 281 50.9
Sc02g0000340 Simmondsia chinensis HOM05D005118 ORTHO05D006038 1.5e-74 283.9 310 48.4
vmacro07419 Vaccinium macrocarpon HOM05D005118 ORTHO05D006038 1.5e-74 283.9 326 46.6
Phvul.007G152100 Phaseolus vulgaris HOM05D005118 ORTHO05D006038 3.3e-74 282.7 295 47.1
Atru.chr8.1478 Acer truncatum HOM05D005118 ORTHO05D006038 7.4e-74 281.6 300 47.7
AT3G11470 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 1.6e-73 280.4 256 53.5
Lj6g0000791 Lotus japonicus HOM05D005118 ORTHO05D006038 2.1e-73 280.0 288 49.0
Lj6g0018590 Lotus japonicus HOM05D005118 ORTHO05D006038 2.1e-73 280.0 288 49.0
Aa31LG3G4830 Aethionema arabicum HOM05D005118 ORTHO05D006038 3.7e-73 279.3 272 50.0
BraA05t22581Z Brassica rapa HOM05D005118 ORTHO05D006038 6.2e-73 278.5 294 48.6
EL10Ac7g16902 Beta vulgaris HOM05D001354 ORTHO05D007486 1.8e-72 276.9 272 51.8
A05p37870 Brassica napus HOM05D005118 ORTHO05D006038 2.4e-72 276.6 295 48.1
HanXRQChr08g0212801 Helianthus annuus HOM05D005118 ORTHO05D006038 1.2e-71 274.2 289 48.4
Lsat_1_v5_gn_9_20681 Lactuca sativa HOM05D005118 ORTHO05D006038 3.4e-71 272.7 273 53.1
BcaB06g25621 Brassica carinata HOM05D005118 ORTHO05D006038 4.5e-71 272.3 275 49.5
Aa31LG3G4790 Aethionema arabicum HOM05D005118 ORTHO05D006038 1.3e-70 270.8 282 46.8
THA.LOC104816589 Tarenaya hassleriana HOM05D005118 ORTHO05D006038 6.4e-70 268.5 267 49.4
Dinv21195 Davidia involucrata HOM05D005118 ORTHO05D006038 3.2e-69 266.2 241 53.9
Sp3g13570 Schrenkiella parvula HOM05D005118 ORTHO05D006038 4.6e-68 262.3 283 49.1
Os08g0243100 Oryza sativa ssp. japonica HOM05D005118 ORTHO05D006038 1.0e-67 261.2 282 48.2
BcaC05g29371 Brassica carinata HOM05D005118 ORTHO05D006038 1.8e-67 260.4 278 48.6
Zm00001eb000710 Zea mays HOM05D005118 ORTHO05D006038 3.9e-67 259.2 293 47.4
Sabra16G0082800 Salix brachista HOM05D005118 ORTHO05D006038 6.7e-67 258.5 346 41.3
HPP92_018124 Vanilla planifolia HOM05D005118 ORTHO05D006038 6.7e-67 258.5 278 46.8
Thhalv10021266m.g Eutrema salsugineum HOM05D005118 ORTHO05D006038 1.1e-66 257.7 285 47.0
PGR004G0063 Punica granatum HOM05D005118 ORTHO05D006038 1.1e-66 257.7 297 45.8
SGA_v2.0_scaffold31G12903 Striga asiatica HOM05D005118 ORTHO05D006038 1.1e-66 257.7 231 53.7
AUR62037021 Chenopodium quinoa HOM05D005118 ORTHO05D006038 1.9e-66 256.9 258 51.6
Peaxi162Scf00096g00416 Petunia axillaris HOM05D005118 ORTHO05D006038 6.2e-65 251.9 282 47.2
Potri.006G211300 Populus trichocarpa HOM05D005118 ORTHO05D006038 6.2e-65 251.9 212 57.1
Lj2C139G10 Lonicera japonica HOM05D005118 ORTHO05D006038 1.1e-64 251.1 224 55.4
AT2G02765 Arabidopsis thaliana HOM05D005118 ORTHO05D006038 2.4e-64 250.0 201 59.7
Lj6g0005905 Lotus japonicus HOM05D005118 ORTHO05D006038 2.4e-64 250.0 266 49.2
ATR0618G287 Amborella trichopoda HOM05D005118 ORTHO05D006038 3.1e-64 249.6 272 46.7
Nitab4.5_0012129g0010 Nicotiana tabacum HOM05D005118 ORTHO05D006038 1.5e-63 247.3 301 44.5
Cc06_g05990 Coffea canephora HOM05D005118 ORTHO05D006038 3.4e-63 246.1 221 53.4
Hund01804 Selenicereus undatus HOM05D005118 ORTHO05D006038 2.9e-62 243.0 301 42.5
BolC5t33871H Brassica oleracea HOM05D005118 ORTHO05D006038 8.4e-62 241.5 286 45.1
AUR62017509 Chenopodium quinoa HOM05D005118 ORTHO05D006038 8.4e-62 241.5 303 43.6
Ah.08g210500 Amaranthus hybridus HOM05D000892 ORTHO05D009371 1.1e-58 231.1 296 42.9
Haze_12101 Corylus avellana HOM05D005118 ORTHO05D006038 3.3e-58 229.6 280 42.9
SEGI_18237 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 3.3e-58 229.6 311 39.2
Rhsim03G0072000 Rhododendron simsii HOM05D005118 ORTHO05D006038 5.3e-56 222.2 218 52.3
Duzib093G2169 Durio zibethinus HOM05D005118 ORTHO05D006038 2.6e-55 219.9 227 48.9
C05p51840 Brassica napus HOM05D005118 ORTHO05D006038 1.0e-54 218.0 285 42.1
Dinv21192 Davidia involucrata HOM05D005118 ORTHO05D006038 1.4e-53 214.2 232 50.0
Manes.08G026600 Manihot esculenta HOM05D005118 ORTHO05D006038 3.6e-52 209.5 309 39.2
Mapoly0006s0252 Marchantia polymorpha HOM05D005118 ORTHO05D006038 8.8e-51 204.9 298 38.9
BraA05t22230Z Brassica rapa HOM05D005118 ORTHO05D006038 2.0e-50 203.8 193 51.8
Pp3c5_18920 Physcomitrium patens HOM05D005118 ORTHO05D006038 7.4e-50 201.8 300 35.7
BcaB06g29561 Brassica carinata HOM05D005118 ORTHO05D006038 3.7e-49 199.5 285 40.4
SMO144G0078 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 2.6e-47 193.4 284 40.5
HPP92_018147 Vanilla planifolia HOM05D005118 ORTHO05D006038 5.9e-47 192.2 211 44.1
AagrBONN_evm.TU.Sc2ySwM_340.158 Anthoceros agrestis HOM05D005118 ORTHO05D006038 5.0e-46 189.1 300 37.7
SMO118G0036 Selaginella moellendorffii HOM05D005118 ORTHO05D006038 3.6e-44 183.0 278 39.2
AL5G11970 Arabidopsis lyrata HOM05D005118 ORTHO05D006038 6.1e-44 182.2 211 46.9
Potri.016G078400 Populus trichocarpa HOM05D005118 ORTHO05D006038 2.0e-39 167.2 152 53.3
Cpa.g.sc5.3 Carica papaya HOM05D005118 ORTHO05D006038 5.9e-39 165.6 168 50.0
Sabra06G0126100 Salix brachista HOM05D005118 ORTHO05D006038 4.7e-36 156.0 198 43.9
VMungo0720G0644 Vigna mungo HOM05D005118 ORTHO05D006038 5.2e-35 152.5 143 50.3
PGSC0003DMG402008870 Solanum tuberosum HOM05D005118 ORTHO05D006038 3.3e-34 149.8 145 52.4
VMungo0720G2492 Vigna mungo HOM05D005118 ORTHO05D006038 1.7e-33 147.5 173 41.6
BcaC05g28982 Brassica carinata HOM05D005118 ORTHO05D006038 9.4e-29 131.7 252 33.3
FvH4_4g11630 Fragaria vesca HOM05D005118 ORTHO05D006038 2.3e-27 127.1 111 55.9
MD14G1027400 Malus domestica HOM05D005118 ORTHO05D006038 2.6e-26 123.6 135 45.2
FAN12G1659 Fragaria x ananassa HOM05D005118 ORTHO05D006038 4.4e-26 122.9 134 47.8
A05p34090 Brassica napus HOM05D005118 ORTHO05D006038 3.5e-23 113.2 173 37.6
PRCOL_00003909 Prasinoderma coloniale HOM05D005118 ORTHO05D006038 1.0e-19 101.7 201 33.3
Glyma.10G074300 Glycine max HOM05D005118 ORTHO05D006038 6.8e-19 99.0 117 41.9
MCO02G431 Micromonas commoda HOM05D005118 ORTHO05D006038 1.1e-16 91.7 344 24.1
CDE02G4411 Ceratophyllum demersum HOM05D000588 ORTHO05D000637 5.4e-16 89.4 114 42.1
CARHR086010 Cardamine hirsuta HOM05D005118 ORTHO05D006038 4.5e-15 86.3 106 44.3
TPR.G14778 Trifolium pratense HOM05D005118 ORTHO05D006038 7.7e-15 85.5 119 37.0
SEGI_32763 Sequoiadendron giganteum HOM05D005118 ORTHO05D006038 2.3e-14 84.0 97 41.2
Carub.0003s1079 Capsella rubella HOM05D005118 ORTHO05D006038 2.5e-13 80.5 98 43.9
AUR62015050 Chenopodium quinoa HOM05D005118 ORTHO05D006038 2.3e-11 73.9 58 58.6
CBR_g30340 Chara braunii HOM05D005118 ORTHO05D006038 4.0e-11 73.2 225 27.1
BcaB06g25617 Brassica carinata HOM05D005118 ORTHO05D006038 6.8e-11 72.4 57 59.6
BcaB06g25618 Brassica carinata HOM05D005118 ORTHO05D006038 6.8e-11 72.4 57 59.6
Hund15021 Selenicereus undatus HOM05D005118 ORTHO05D006038 3.4e-10 70.1 65 47.7
Ah.16g107780 Amaranthus hybridus HOM05D005118 ORTHO05D006038 7.5e-10 68.9 89 42.7
FvH4_7g05530 Fragaria vesca HOM05D007318 ORTHO05D009289 3.2e-08 63.5 215 26.0
Nitab4.5_0001437g0020 Nicotiana tabacum HOM05D007318 ORTHO05D009289 4.1e-08 63.2 223 27.4
Eucgr.J00256 Eucalyptus grandis HOM05D007318 ORTHO05D009289 1.6e-07 61.2 161 29.2
FAN06G3353 Fragaria x ananassa HOM05D007318 ORTHO05D009289 1.6e-07 61.2 215 25.6
RcHm_v2.0_Chr1g0332361 Rosa chinensis HOM05D007318 ORTHO05D009289 1.6e-07 61.2 227 26.0
CiPaw.14G032900 Carya illinoinensis HOM05D007318 ORTHO05D009289 2.0e-07 60.8 215 27.0
Lj2E139T0 Lonicera japonica HOM05D005118 ORTHO05D006038 2.0e-07 60.8 53 50.9
Nitab4.5_0011538g0040 Nicotiana tabacum HOM05D007318 ORTHO05D009289 2.7e-07 60.5 211 26.5
arahy.Tifrunner.gnm1.ann1.CJJ3HV Arachis hypogaea HOM05D007318 ORTHO05D009289 4.6e-07 59.7 153 28.8
arahy.Tifrunner.gnm1.ann1.CYVU5X Arachis hypogaea HOM05D007318 ORTHO05D009289 4.6e-07 59.7 153 28.8
arahy.Tifrunner.gnm1.ann1.PPG341 Arachis hypogaea HOM05D007318 ORTHO05D009289 4.6e-07 59.7 153 28.8
FAN01G1304 Fragaria x ananassa HOM05D007318 ORTHO05D009289 4.6e-07 59.7 215 25.1
DCAR_018980 Daucus carota HOM05D007318 ORTHO05D009289 7.8e-07 58.9 219 24.2
Prupe.2G075500 Prunus persica HOM05D007318 ORTHO05D009289 7.8e-07 58.9 201 30.3
Lalb_Chr01g0010421 Lupinus albus HOM05D007318 ORTHO05D009289 1.7e-06 57.8 172 26.7
Cre01.g018500 Chlamydomonas reinhardtii HOM05D005118 ORTHO05D006038 2.3e-06 57.4 162 29.0
Ca_20265_v3 Cicer arietinum L. HOM05D007318 ORTHO05D009289 3.9e-06 56.6 164 28.0
Peaxi162Scf00173g00322 Petunia axillaris HOM05D007318 ORTHO05D009289 5.0e-06 56.2 222 25.7


User provided reference genes

Program Settings