Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 0.0e+00 1451.4 715 100.0
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.9e-253 879.4 812 56.2
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 4.2e-253 878.2 809 57.0
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 7.1e-237 824.3 817 52.3
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.1e-236 822.8 817 52.3
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 3.1e-232 808.9 817 51.8
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 2.3e-227 792.7 810 50.6
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 5.7e-226 788.1 811 49.9
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 1.3e-225 786.9 853 49.0
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 6.3e-225 784.6 811 50.7
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 8.2e-225 784.3 811 50.7
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 4.1e-224 781.9 814 50.5
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 2.6e-223 779.2 813 49.9
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 3.2e-221 772.3 813 49.3
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 1.3e-219 766.9 806 48.3
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 2.3e-219 766.1 814 49.3
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 3.0e-219 765.8 820 50.2
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 6.7e-219 764.6 814 50.0
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 8.7e-219 764.2 814 49.3
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 2.5e-218 762.7 820 48.9
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 5.7e-218 761.5 812 48.9
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 1.3e-217 760.4 824 48.7
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 2.2e-217 759.6 816 49.0
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 8.2e-217 757.7 816 47.5
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 4.1e-216 755.4 814 48.5
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 5.3e-216 755.0 820 48.5
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 1.2e-215 753.8 813 48.8
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 2.6e-215 752.7 815 49.1
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 4.5e-215 751.9 810 48.1
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.9e-214 749.2 812 48.2
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 2.9e-214 749.2 821 50.5
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 3.8e-214 748.8 804 47.9
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 5.0e-214 748.4 813 49.3
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 6.5e-214 748.0 811 48.1
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 1.4e-213 746.9 812 48.9
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 2.5e-213 746.1 793 49.1
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 2.5e-213 746.1 813 49.1
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 7.2e-213 744.6 811 48.0
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 1.2e-212 743.8 814 48.8
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 6.1e-212 741.5 813 48.7
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 2.3e-211 739.6 808 47.6
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 3.0e-211 739.2 814 48.2
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 3.0e-211 739.2 814 48.6
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 3.0e-211 739.2 819 48.5
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 5.1e-211 738.4 818 47.9
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 2.6e-210 736.1 871 45.4
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 3.3e-210 735.7 811 47.8
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 2.2e-209 733.0 813 49.6
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 8.2e-209 731.1 808 48.0
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 4.5e-207 725.3 816 47.1
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 5.9e-207 724.9 810 46.9
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 5.9e-207 724.9 821 46.8
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 7.7e-207 724.5 808 47.5
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 1.0e-206 724.2 814 47.4
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 2.2e-206 723.0 826 48.5
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 3.8e-206 722.2 876 45.1
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 3.2e-205 719.2 817 47.1
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 3.2e-205 719.2 817 46.9
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 1.2e-204 717.2 804 46.0
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 2.3e-203 713.0 808 46.8
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 4.4e-202 708.8 810 46.4
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 1.8e-200 703.4 784 47.7
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 4.1e-200 702.2 805 45.2
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 1.6e-199 700.3 799 47.2
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 5.0e-198 695.3 811 46.0
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 6.5e-198 694.9 804 44.4
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 1.6e-196 690.3 812 45.8
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 2.7e-196 689.5 814 46.8
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 3.6e-196 689.1 806 45.8
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 2.3e-195 686.4 812 46.3
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 6.7e-195 684.9 811 46.1
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 2.2e-193 679.9 786 46.6
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.8e-193 679.5 824 45.3
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 4.8e-193 678.7 826 45.4
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 4.8e-193 678.7 814 46.3
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 4.1e-192 675.6 822 45.3
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 2.7e-191 672.9 829 45.2
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 4.5e-191 672.2 830 44.8
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 1.0e-190 671.0 824 44.7
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 1.7e-190 670.2 769 46.6
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 5.0e-190 668.7 823 44.5
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 5.0e-190 668.7 805 43.2
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 8.5e-190 667.9 823 44.3
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 1.1e-189 667.5 825 45.0
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 4.2e-189 665.6 823 44.3
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 9.4e-189 664.5 831 43.9
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 9.4e-189 664.5 816 44.0
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.6e-188 663.7 823 44.2
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 5.2e-187 658.7 827 43.8
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 5.2e-187 658.7 809 44.0
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 5.7e-186 655.2 811 45.0
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 3.1e-184 649.4 886 44.1
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 9.5e-181 637.9 813 41.6
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 5.4e-176 622.1 771 44.2
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 2.7e-175 619.8 813 42.8
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 3.5e-175 619.4 702 47.4
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 1.8e-171 607.1 811 41.4
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 3.2e-160 569.7 626 46.6
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 6.6e-158 562.0 582 51.0
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 1.3e-150 537.7 537 51.4
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 2.1e-143 513.8 821 36.7
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 4.3e-133 479.6 818 36.2
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 3.6e-132 476.5 818 36.3
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 1.6e-124 451.1 850 35.2
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 9.3e-112 408.7 459 48.4
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 7.9e-111 405.6 819 34.3
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 8.7e-110 402.1 845 31.1
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 1.0e-102 378.6 803 33.4
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 1.1e-101 375.2 823 31.0
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.3e-100 371.7 530 40.9
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 3.7e-100 370.2 791 34.8
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 8.2e-100 369.0 852 32.0
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 1.5e-98 364.8 785 34.0
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.5e-93 348.2 475 42.7
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 8.2e-92 342.4 823 29.4
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 9.1e-91 339.0 675 32.7
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 1.9e-88 331.3 298 53.0
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 1.0e-70 272.3 384 43.5
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.2e-53 215.7 368 36.4
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 2.4e-51 208.0 402 31.3
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 2.1e-47 194.9 274 41.2
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 2.3e-46 191.4 274 40.5
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 2.6e-45 188.0 274 40.5
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 3.0e-41 174.5 164 55.5
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 4.0e-38 164.1 195 45.1
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 6.8e-38 163.3 745 23.1
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 3.7e-36 157.5 209 41.1
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 2.6e-29 134.8 104 60.6
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 5.8e-29 133.7 769 21.2
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 9.2e-27 126.3 136 45.6
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 2.8e-23 114.8 132 46.2
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 9.0e-22 109.8 352 28.1
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.0e-17 96.3 94 50.0
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 2.8e-15 88.2 61 67.2
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 1.2e-13 82.8 105 41.0
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 4.9e-12 77.4 97 41.2
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 1.1e-11 76.3 62 62.9
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 4.3e-08 64.3 95 44.2
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 2.1e-07 62.0 106 32.1
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 4.8e-07 60.8 106 31.1


User provided reference genes

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