Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7799 Utricularia gibba HOM05D001880 ORTHO05D005098 2.1e-115 419.1 216 100.0
Nitab4.5_0007240g0010 Nicotiana tabacum HOM05D001880 ORTHO05D005098 3.2e-108 395.2 216 92.1
CAN.G21.29 Capsicum annuum HOM05D001880 ORTHO05D005098 7.2e-108 394.0 216 91.2
Nitab4.5_0000052g0180 Nicotiana tabacum HOM05D001880 ORTHO05D005098 1.6e-107 392.9 214 92.1
PGSC0003DMG400010834 Solanum tuberosum HOM05D001880 ORTHO05D005098 2.7e-107 392.1 216 90.7
Solyc08g068300.3 Solanum lycopersicum HOM05D001880 ORTHO05D005098 6.1e-107 391.0 216 90.7
Sopen08g022150 Solanum pennellii HOM05D001880 ORTHO05D005098 6.1e-107 391.0 216 90.7
Peaxi162Scf00523g00111 Petunia axillaris HOM05D001880 ORTHO05D005098 3.0e-106 388.7 216 90.3
Cc08_g09010 Coffea canephora HOM05D001880 ORTHO05D005098 7.4e-105 384.0 216 89.8
Migut.A00247 Erythranthe guttata HOM05D001880 ORTHO05D005098 9.7e-105 383.6 216 90.7
Hma1.2p1_0422F.1_g150140 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 2.2e-104 382.5 216 88.9
MSTRG.25891 Avicennia marina HOM05D001880 ORTHO05D005098 4.8e-104 381.3 216 89.8
DCAR_004495 Daucus carota HOM05D001880 ORTHO05D005098 6.3e-104 380.9 216 88.4
MSTRG.1651 Avicennia marina HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 88.4
THA.LOC104815053 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 3.1e-103 378.6 216 88.4
Thecc.09G040200 Theobroma cacao HOM05D001880 ORTHO05D005098 5.3e-103 377.9 216 88.0
THA.LOC104799203 Tarenaya hassleriana HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 87.5
vmacro07643 Vaccinium macrocarpon HOM05D001880 ORTHO05D005098 7.0e-103 377.5 216 87.5
CSS0008123 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 87.5
CSS0050171 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 9.1e-103 377.1 216 87.5
Nn3g18068 Nelumbo nucifera HOM05D001880 ORTHO05D005098 1.2e-102 376.7 216 87.5
Ciclev10009455m.g Citrus clementina HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 87.5
MELO3C003579.2 Cucumis melo HOM05D001880 ORTHO05D005098 2.6e-102 375.6 216 87.5
Sed0004320 Sechium edule HOM05D001880 ORTHO05D005098 3.5e-102 375.2 216 86.1
Duzib150G0439 Durio zibethinus HOM05D001880 ORTHO05D005098 4.5e-102 374.8 216 87.0
ClCG11G014050 Citrullus lanatus HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 87.0
Hma1.2p1_0140F.1_g063500 Hydrangea macrophylla HOM05D001880 ORTHO05D005098 5.9e-102 374.4 216 87.5
arahy.Tifrunner.gnm1.ann1.I4CW6I Arachis hypogaea HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.1
HanXRQChr07g0188141 Helianthus annuus HOM05D001880 ORTHO05D005098 7.7e-102 374.0 216 86.6
CsaV3_3G047450 Cucumis sativus L. HOM05D001880 ORTHO05D005098 1.0e-101 373.6 216 86.6
arahy.Tifrunner.gnm1.ann1.0TS4QU Arachis hypogaea HOM05D001880 ORTHO05D005098 1.3e-101 373.2 216 86.1
Carub.0006s0996 Capsella rubella HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 86.6
Thhalv10014652m.g Eutrema salsugineum HOM05D001880 ORTHO05D005098 1.7e-101 372.9 216 87.0
ATR0315G044 Amborella trichopoda HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 86.1
Sed0015028 Sechium edule HOM05D001880 ORTHO05D005098 2.2e-101 372.5 216 86.6
Manes.16G065900 Manihot esculenta HOM05D001880 ORTHO05D005098 2.9e-101 372.1 216 85.6
AL6G22170 Arabidopsis lyrata HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
AT5G11500 Arabidopsis thaliana HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 86.1
Potri.006G241900 Populus trichocarpa HOM05D001880 ORTHO05D005098 3.8e-101 371.7 216 87.0
BcaB08g37053 Brassica carinata HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 86.1
Eucgr.C01583 Eucalyptus grandis HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 86.6
Potri.018G037800 Populus trichocarpa HOM05D001880 ORTHO05D005098 5.0e-101 371.3 216 86.1
SGA_v2.0_scaffold163G38091 Striga asiatica HOM05D001880 ORTHO05D005098 5.0e-101 371.3 221 85.5
Dinv14228 Davidia involucrata HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 87.0
Glyma.04G080400 Glycine max HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 87.0
Gohir.D08G272200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.6
Gorai.004G290600 Gossypium raimondii HOM05D001880 ORTHO05D005098 6.5e-101 370.9 216 86.6
Sp6g32100 Schrenkiella parvula HOM05D001880 ORTHO05D005098 1.1e-100 370.2 216 86.1
BcaB01g05480 Brassica carinata HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 86.1
A03p05050 Brassica napus HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 86.1
BraA03t09839Z Brassica rapa HOM05D001880 ORTHO05D005098 1.5e-100 369.8 216 86.1
C03p05780 Brassica napus HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 85.6
BolC3t13091H Brassica oleracea HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 85.6
DCAR_000746 Daucus carota HOM05D001880 ORTHO05D005098 1.9e-100 369.4 216 86.1
C09p65340 Brassica napus HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 85.2
CARHR201720 Cardamine hirsuta HOM05D001880 ORTHO05D005098 2.5e-100 369.0 216 86.1
VMungo1309G0461 Vigna mungo HOM05D001880 ORTHO05D005098 2.5e-100 369.0 215 86.5
TAR626G0694 Trochodendron aralioides HOM05D001880 ORTHO05D005098 3.2e-100 368.6 216 84.7
A10p26250 Brassica napus HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 84.7
BraA10t44682Z Brassica rapa HOM05D001880 ORTHO05D005098 4.2e-100 368.2 216 84.7
Duzib187G1109 Durio zibethinus HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 86.1
TAR383G0375 Trochodendron aralioides HOM05D001880 ORTHO05D005098 5.5e-100 367.9 216 84.7
Atru.chr7.2156 Acer truncatum HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 85.2
BcaC04g19219 Brassica carinata HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 84.7
BolC9t59360H Brassica oleracea HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 84.7
CiPaw.08G023800 Carya illinoinensis HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 85.6
Phvul.009G106500 Phaseolus vulgaris HOM05D001880 ORTHO05D005098 7.2e-100 367.5 216 85.2
SalBow8G4639 Salvia bowleyana HOM05D001880 ORTHO05D005098 7.2e-100 367.5 217 85.7
COL.COLO4_18693 Corchorus olitorius HOM05D001880 ORTHO05D005098 1.2e-99 366.7 216 85.6
Gohir.A08G250700 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.6e-99 366.3 216 85.6
Manes.03G063100 Manihot esculenta HOM05D001880 ORTHO05D005098 2.7e-99 365.5 216 84.3
BcaC03g13368 Brassica carinata HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.7
Nn2g11707 Nelumbo nucifera HOM05D001880 ORTHO05D005098 3.6e-99 365.2 216 84.3
Cpa.g.sc78.78 Carica papaya HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 85.2
Gohir.D07G027400 Gossypium hirsutum HOM05D001880 ORTHO05D005098 4.7e-99 364.8 216 85.2
TWI63G1366 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 1.0e-98 363.6 216 84.7
Cfa013347 Carpinus fangiana HOM05D001880 ORTHO05D005098 1.4e-98 363.2 215 84.2
Gohir.A07G023800 Gossypium hirsutum HOM05D001880 ORTHO05D005098 1.4e-98 363.2 216 84.7
Lj1g0025868 Lotus japonicus HOM05D001880 ORTHO05D005098 1.8e-98 362.8 220 84.5
Psat0s4721g0040 Pisum sativum HOM05D001880 ORTHO05D005098 1.8e-98 362.8 216 84.3
C02p05070 Brassica napus HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 83.8
Gohir.D05G049500 Gossypium hirsutum HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 85.2
PGR044G1166 Punica granatum HOM05D001880 ORTHO05D005098 3.0e-98 362.1 216 84.7
Aqoxy7G01618 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 4.0e-98 361.7 216 82.9
Gorai.009G050800 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 85.2
PSO210G6462 Papaver somniferum HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 82.4
Zm00001eb350500 Zea mays HOM05D001880 ORTHO05D005098 5.2e-98 361.3 216 82.4
CANSAT25G1770 Cannabis sativa HOM05D001880 ORTHO05D005098 6.7e-98 360.9 216 83.8
CiPaw.07G206800 Carya illinoinensis HOM05D001880 ORTHO05D005098 1.1e-97 360.1 215 82.8
Glyma.06G082100 Glycine max HOM05D001880 ORTHO05D005098 1.1e-97 360.1 216 83.8
PSO210G1422 Papaver somniferum HOM05D001880 ORTHO05D005098 1.1e-97 360.1 216 81.9
Gorai.001G028600 Gossypium raimondii HOM05D001880 ORTHO05D005098 1.5e-97 359.8 215 83.7
Medtr3g110022 Medicago truncatula HOM05D001880 ORTHO05D005098 1.5e-97 359.8 216 83.8
HPP92_023949 Vanilla planifolia HOM05D001880 ORTHO05D005098 2.0e-97 359.4 216 81.9
CDE05G1188 Ceratophyllum demersum HOM05D001880 ORTHO05D005098 5.7e-97 357.8 216 82.4
Gohir.A05G048200 Gossypium hirsutum HOM05D001880 ORTHO05D005098 5.7e-97 357.8 216 83.8
Lalb_Chr11g0064351 Lupinus albus HOM05D001880 ORTHO05D005098 2.2e-96 355.9 216 82.4
TWI32G1114 Tripterygium wilfordii HOM05D001880 ORTHO05D005098 3.7e-96 355.1 216 82.9
Lalb_Chr08g0243251 Lupinus albus HOM05D001880 ORTHO05D005098 4.8e-96 354.8 216 82.9
Aqoxy7G03843 Aquilegia oxysepala HOM05D001880 ORTHO05D005098 6.3e-96 354.4 216 80.1
MD08G1117900 Malus domestica HOM05D001880 ORTHO05D005098 6.3e-96 354.4 216 82.4
MD15G1097400 Malus domestica HOM05D001880 ORTHO05D005098 8.2e-96 354.0 216 82.4
Prupe.1G452200 Prunus persica HOM05D001880 ORTHO05D005098 1.8e-95 352.8 227 80.2
BcaNung01928 Brassica carinata HOM05D001880 ORTHO05D005098 1.2e-94 350.1 221 81.4
Lalb_Chr23g0269461 Lupinus albus HOM05D001880 ORTHO05D005098 2.0e-94 349.4 216 81.5
TPR.G1376 Trifolium pratense HOM05D001880 ORTHO05D005098 4.5e-94 348.2 216 81.9
SalBow4G0117 Salvia bowleyana HOM05D001880 ORTHO05D005098 7.7e-94 347.4 216 84.3
SMO134G0016 Selaginella moellendorffii HOM05D001880 ORTHO05D005098 1.5e-92 343.2 216 78.2
Rhsim03G0046500 Rhododendron simsii HOM05D001880 ORTHO05D005098 2.5e-92 342.4 216 81.9
Lj8C597T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.6e-91 339.7 216 80.6
Mapoly0042s0036 Marchantia polymorpha HOM05D001880 ORTHO05D005098 1.6e-91 339.7 216 78.2
GSVIVG01035667001 Vitis vinifera HOM05D001880 ORTHO05D005098 2.3e-90 335.9 199 85.4
SGA_v2.0_scaffold169G38642 Striga asiatica HOM05D001880 ORTHO05D005098 2.0e-89 332.8 216 79.2
Hund19544 Selenicereus undatus HOM05D001880 ORTHO05D005098 2.6e-89 332.4 221 78.3
CBR_g40963 Chara braunii HOM05D001880 ORTHO05D005098 2.2e-88 329.3 216 78.7
BolC2t06461H Brassica oleracea HOM05D001880 ORTHO05D005098 3.7e-88 328.6 218 77.5
Aa31LG3G15700 Aethionema arabicum HOM05D001758 ORTHO05D005969 1.4e-87 326.6 216 77.8
Pp3c9_4250 Physcomitrium patens HOM05D001880 ORTHO05D005098 7.0e-87 324.3 216 75.5
FvH4_2g36060 Fragaria vesca HOM05D001880 ORTHO05D005098 1.6e-86 323.2 216 76.9
RcHm_v2.0_Chr6g0305791 Rosa chinensis HOM05D001880 ORTHO05D005098 1.6e-86 323.2 216 76.9
Lsat_1_v5_gn_5_34021 Lactuca sativa HOM05D001880 ORTHO05D005098 2.0e-86 322.8 215 77.7
Pp3c9_9290 Physcomitrium patens HOM05D001880 ORTHO05D005098 2.0e-86 322.8 216 74.5
CBR_g39177 Chara braunii HOM05D001880 ORTHO05D005098 3.5e-86 322.0 216 76.4
Oeu014654.1 Olea europaea HOM05D001880 ORTHO05D005098 3.5e-86 322.0 216 78.2
ECA246G2183 Erigeron canadensis HOM05D001880 ORTHO05D004730 8.5e-85 317.4 214 74.8
Os01g0750500 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 8.5e-85 317.4 216 72.2
QL12p026578 Quercus lobata HOM05D001880 ORTHO05D005098 3.4e-81 305.4 165 89.7
Oeu016233.2 Olea europaea HOM05D001880 ORTHO05D005098 4.4e-81 305.1 216 73.1
Dinv30256 Davidia involucrata HOM05D001880 ORTHO05D005098 3.7e-80 302.0 165 89.7
Ca_15617_v3 Cicer arietinum L. HOM05D001880 ORTHO05D005098 1.1e-79 300.4 165 89.1
AUR62009327 Chenopodium quinoa HOM05D001880 ORTHO05D005098 7.0e-79 297.7 216 72.2
Sc09g0009110 Simmondsia chinensis HOM05D001880 ORTHO05D005098 3.5e-78 295.4 276 59.4
EL10Ac2g04067 Beta vulgaris HOM05D001880 ORTHO05D005098 4.3e-76 288.5 216 71.8
Gorai.011G152300 Gossypium raimondii HOM05D001880 ORTHO05D005098 3.6e-75 285.4 216 68.5
FAN27G1491 Fragaria x ananassa HOM05D001880 ORTHO05D005098 1.4e-74 283.5 216 69.9
FAN15G2674 Fragaria x ananassa HOM05D001880 ORTHO05D005098 5.2e-74 281.6 216 69.4
Lj8C602T7 Lonicera japonica HOM05D001880 ORTHO05D005098 1.5e-73 280.0 216 69.4
Zm00001eb153360 Zea mays HOM05D001880 ORTHO05D005098 1.3e-72 276.9 217 66.8
PSO832G1756 Papaver somniferum HOM05D001880 ORTHO05D005098 9.2e-71 270.8 217 65.9
AUR62023014 Chenopodium quinoa HOM05D000682 ORTHO05D000510 5.0e-69 265.0 203 70.0
Rhsim03G0044500 Rhododendron simsii HOM05D001880 ORTHO05D005098 3.3e-68 262.3 180 78.3
Haze_21860 Corylus avellana HOM05D001880 ORTHO05D005098 4.3e-68 261.9 353 46.7
Sabra18G0038400 Salix brachista HOM05D001880 ORTHO05D005098 4.0e-66 255.4 165 78.2
Ah.10g035220 Amaranthus hybridus HOM05D001880 ORTHO05D005098 2.0e-65 253.1 217 65.0
AagrBONN_evm.TU.Sc2ySwM_228.2603 Anthoceros agrestis HOM05D001880 ORTHO05D005098 1.3e-64 250.4 144 80.6
MCO11G833 Micromonas commoda HOM05D001880 ORTHO05D005098 5.6e-60 235.0 219 58.9
PRCOL_00004463 Prasinoderma coloniale HOM05D001880 ORTHO05D005098 4.0e-58 228.8 233 54.5
Cre06.g275300 Chlamydomonas reinhardtii HOM05D001880 ORTHO05D005098 5.8e-49 198.4 219 48.9
CSS0023199 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 2.2e-48 196.4 273 49.1
Cc00_g02820 Coffea canephora HOM05D001880 ORTHO05D005098 5.4e-47 191.8 108 80.6
Cc03_g15000 Coffea canephora HOM05D001880 ORTHO05D005098 5.4e-47 191.8 108 80.6
MBI04_g19163_MAGBIO Magnolia biondii HOM05D001880 ORTHO05D005098 5.4e-47 191.8 136 76.5
Cfa026630 Carpinus fangiana HOM05D004477 ORTHO05D005615 7.3e-44 181.4 205 49.8
HPP92_023928 Vanilla planifolia HOM05D001880 ORTHO05D005098 3.1e-42 176.0 135 71.1
Lj7A706T45 Lonicera japonica HOM05D001880 ORTHO05D005098 1.4e-39 167.2 114 76.3
Pp3c9_8200 Physcomitrium patens HOM05D001880 ORTHO05D005098 1.5e-36 157.1 106 70.8
Sabra06G0189300 Salix brachista HOM05D001880 ORTHO05D005098 7.3e-36 154.8 81 88.9
HPP92_023929 Vanilla planifolia HOM05D001880 ORTHO05D005098 8.1e-35 151.4 84 78.6
Lj7A706G42 Lonicera japonica HOM05D001880 ORTHO05D001339 2.0e-33 146.7 178 49.4
Os05g0221400 Oryza sativa ssp. japonica HOM05D001880 ORTHO05D005098 2.2e-32 143.3 81 81.5
Zm00001eb036010 Zea mays HOM05D001880 ORTHO05D005098 3.8e-32 142.5 101 76.2
Zm00001eb052320 Zea mays HOM05D001880 ORTHO05D005098 3.8e-32 142.5 101 76.2
Zm00001eb071380 Zea mays HOM05D001880 ORTHO05D005098 3.8e-32 142.5 101 76.2
Zm00001eb291550 Zea mays HOM05D001880 ORTHO05D005098 3.8e-32 142.5 101 76.2
Zm00001eb391830 Zea mays HOM05D001880 ORTHO05D005098 3.8e-32 142.5 101 76.2
Cc00_g34580 Coffea canephora HOM05D001880 ORTHO05D005098 1.8e-26 123.6 70 77.1
CSS0036439 Camellia sinensis var. sinensis HOM05D001880 ORTHO05D005098 9.6e-20 101.3 63 84.1
Gorai.011G178000 Gossypium raimondii HOM05D001880 ORTHO05D005098 2.1e-19 100.1 74 77.0
Gorai.012G085200 Gossypium raimondii HOM05D001880 ORTHO05D005098 5.3e-18 95.5 68 77.9
Gorai.011G118500 Gossypium raimondii HOM05D001880 ORTHO05D013650 4.8e-11 72.4 39 82.1
Gorai.002G175500 Gossypium raimondii HOM05D001035 ORTHO05D013650 1.8e-10 70.5 39 79.5
SalBow5G0200 Salvia bowleyana HOM05D001880 ORTHO05D355852 5.3e-10 68.9 48 70.8
SalBow8G1849 Salvia bowleyana HOM05D001880 ORTHO05D363534 5.3e-10 68.9 48 70.8
SalBow8G2043 Salvia bowleyana HOM05D001880 ORTHO05D356500 5.3e-10 68.9 48 70.8
SalBow6G5594 Salvia bowleyana HOM05D001880 ORTHO05D357349 2.0e-09 67.0 48 68.8


User provided reference genes

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