Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7794 Utricularia gibba HOM05D002444 ORTHO05D009235 2.4e-176 622.1 315 100.0
MSTRG.3868 Avicennia marina HOM05D002444 ORTHO05D009235 3.5e-79 299.3 256 63.3
SGA_v2.0_scaffold18G08390 Striga asiatica HOM05D002444 ORTHO05D009235 5.1e-70 268.9 253 55.3
SalBow8G2135 Salvia bowleyana HOM05D002444 ORTHO05D009235 6.9e-67 258.5 249 55.4
Cc03_g01100 Coffea canephora HOM05D002444 ORTHO05D009235 4.9e-65 252.3 253 54.5
CANSAT01G1305 Cannabis sativa HOM05D002444 ORTHO05D009235 3.2e-64 249.6 202 59.9
A01p37370 Brassica napus HOM05D002444 ORTHO05D009235 1.0e-62 244.6 198 57.6
BraA01t03795Z Brassica rapa HOM05D002444 ORTHO05D009235 1.0e-62 244.6 198 57.6
CSS0000232 Camellia sinensis var. sinensis HOM05D002444 ORTHO05D009235 1.0e-62 244.6 183 64.5
Cpa.g.sc9.92 Carica papaya HOM05D002444 ORTHO05D009235 1.0e-62 244.6 264 50.8
Actinidia40353 Actinidia chinensis HOM05D002444 ORTHO05D009235 1.8e-62 243.8 257 52.1
Dinv44313 Davidia involucrata HOM05D002444 ORTHO05D009235 2.3e-62 243.4 258 53.9
BcaC09g48647 Brassica carinata HOM05D002444 ORTHO05D009235 3.0e-62 243.0 198 57.1
BolC1t04700H Brassica oleracea HOM05D002444 ORTHO05D009235 3.0e-62 243.0 198 57.6
C01p47300 Brassica napus HOM05D002444 ORTHO05D009235 6.7e-62 241.9 198 57.1
CAN.G197.15 Capsicum annuum HOM05D002444 ORTHO05D009235 4.3e-61 239.2 180 62.2
Duzib151G0185 Durio zibethinus HOM05D002444 ORTHO05D009235 4.3e-61 239.2 211 55.9
QL02p088731 Quercus lobata HOM05D002444 ORTHO05D009235 7.4e-61 238.4 255 50.6
DCAR_023334 Daucus carota HOM05D002444 ORTHO05D009235 9.6e-61 238.0 179 65.4
Rhsim04G0232800 Rhododendron simsii HOM05D002444 ORTHO05D009235 1.6e-60 237.3 170 67.1
Nn3g21650 Nelumbo nucifera HOM05D002444 ORTHO05D009235 8.1e-60 235.0 263 49.4
Prupe.1G002300 Prunus persica HOM05D002444 ORTHO05D009235 8.1e-60 235.0 258 50.0
Haze_01077 Corylus avellana HOM05D002444 ORTHO05D009235 1.1e-59 234.6 260 48.8
Potri.008G108300 Populus trichocarpa HOM05D002444 ORTHO05D009235 1.1e-59 234.6 252 49.6
Nitab4.5_0000169g0070 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.4e-59 234.2 260 48.8
Thecc.04G296100 Theobroma cacao HOM05D002444 ORTHO05D009235 2.4e-59 233.4 246 51.2
TAR374G0260 Trochodendron aralioides HOM05D002444 ORTHO05D009235 3.1e-59 233.0 210 55.2
Hma1.2p1_0078F.1_g040150 Hydrangea macrophylla HOM05D002444 ORTHO05D009235 4.0e-59 232.6 178 62.9
Oeu019954.2 Olea europaea HOM05D002444 ORTHO05D009235 4.0e-59 232.6 251 49.4
MBI06_g47069_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 5.3e-59 232.3 267 49.4
EL10Ac3g04919 Beta vulgaris HOM05D002444 ORTHO05D009235 9.0e-59 231.5 252 50.4
Lsat_1_v5_gn_6_19160 Lactuca sativa HOM05D002444 ORTHO05D009235 9.0e-59 231.5 254 51.2
PGSC0003DMG401007553 Solanum tuberosum HOM05D002444 ORTHO05D009235 9.0e-59 231.5 227 51.5
Sopen01g026450 Solanum pennellii HOM05D002444 ORTHO05D009235 1.2e-58 231.1 258 48.1
Nitab4.5_0005333g0010 Nicotiana tabacum HOM05D002444 ORTHO05D009235 1.5e-58 230.7 259 47.1
CiPaw.02G076500 Carya illinoinensis HOM05D002444 ORTHO05D009235 3.4e-58 229.6 256 49.6
Sabra08G0082100 Salix brachista HOM05D002444 ORTHO05D009235 3.4e-58 229.6 198 57.6
AUR62016141 Chenopodium quinoa HOM05D002444 ORTHO05D009235 5.8e-58 228.8 206 57.3
Gorai.006G078600 Gossypium raimondii HOM05D002444 ORTHO05D009235 1.3e-57 227.6 246 48.8
Manes.03G202100 Manihot esculenta HOM05D002444 ORTHO05D009235 1.3e-57 227.6 170 64.1
AUR62042953 Chenopodium quinoa HOM05D002444 ORTHO05D009235 2.9e-57 226.5 255 49.0
Gohir.A09G064700 Gossypium hirsutum HOM05D002444 ORTHO05D009235 3.8e-57 226.1 246 48.8
Ah.04g154860 Amaranthus hybridus HOM05D002444 ORTHO05D009235 4.9e-57 225.7 176 60.8
RcHm_v2.0_Chr7g0221991 Rosa chinensis HOM05D002444 ORTHO05D009235 1.1e-56 224.6 192 59.9
Sc13g0006330 Simmondsia chinensis HOM05D002444 ORTHO05D009235 1.1e-56 224.6 246 49.2
THA.LOC104821798 Tarenaya hassleriana HOM05D002444 ORTHO05D009235 1.9e-56 223.8 173 59.5
vmacro08072 Vaccinium macrocarpon HOM05D002444 ORTHO05D009235 1.2e-55 221.1 250 50.4
Lj6C687T6 Lonicera japonica HOM05D002444 ORTHO05D009235 1.6e-55 220.7 258 50.0
Aa31LG8G3960 Aethionema arabicum HOM05D002444 ORTHO05D009235 1.8e-54 217.2 166 60.8
MD00G1073300 Malus domestica HOM05D002444 ORTHO05D009235 5.1e-54 215.7 258 47.3
TWI73G0446 Tripterygium wilfordii HOM05D002444 ORTHO05D009235 5.1e-54 215.7 248 47.2
arahy.Tifrunner.gnm1.ann1.48GXQL Arachis hypogaea HOM05D002444 ORTHO05D009235 6.7e-54 215.3 194 54.6
FAN18G1273 Fragaria x ananassa HOM05D002444 ORTHO05D009235 6.7e-54 215.3 173 61.3
FvH4_5g29230 Fragaria vesca HOM05D002444 ORTHO05D009235 3.3e-53 213.0 234 52.1
FAN13G1854 Fragaria x ananassa HOM05D002444 ORTHO05D009235 5.6e-53 212.2 196 55.6
Thhalv10022362m.g Eutrema salsugineum HOM05D002444 ORTHO05D009235 9.6e-53 211.5 167 58.7
CDE02G3715 Ceratophyllum demersum HOM05D002444 ORTHO05D009235 1.3e-52 211.1 169 58.0
PGR142G0401 Punica granatum HOM05D002444 ORTHO05D009235 1.3e-52 211.1 221 50.7
Sp3g15130 Schrenkiella parvula HOM05D002444 ORTHO05D009235 1.3e-52 211.1 167 57.5
Carub.0003s1662 Capsella rubella HOM05D002444 ORTHO05D009235 2.1e-52 210.3 170 57.6
MELO3C006701.2 Cucumis melo HOM05D002444 ORTHO05D009235 3.7e-52 209.5 257 47.9
Lalb_Chr05g0229111 Lupinus albus HOM05D002444 ORTHO05D009235 6.2e-52 208.8 184 55.4
AL3G29860 Arabidopsis lyrata HOM05D002444 ORTHO05D009235 8.2e-52 208.4 167 56.9
COL.COLO4_34661 Corchorus olitorius HOM05D001121 ORTHO05D009235 3.1e-51 206.5 167 58.7
COL.COLO4_29076 Corchorus olitorius HOM05D002444 ORTHO05D009235 6.9e-51 205.3 166 59.0
CsaV3_3G015050 Cucumis sativus L. HOM05D002444 ORTHO05D009235 9.0e-51 204.9 178 59.6
arahy.Tifrunner.gnm1.ann1.9AMP7R Arachis hypogaea HOM05D002444 ORTHO05D009235 1.5e-50 204.1 171 56.7
SHI00166 Sapria himalayana HOM05D002444 ORTHO05D009235 4.5e-50 202.6 220 47.3
Lj4g0020012 Lotus japonicus HOM05D002444 ORTHO05D009235 8.4e-49 198.4 170 56.5
Glyma.08G268300 Glycine max HOM05D002444 ORTHO05D009235 1.1e-48 198.0 176 53.4
Sed0015924 Sechium edule HOM05D002444 ORTHO05D009235 3.5e-47 193.0 160 61.2
TPR.G24811 Trifolium pratense HOM05D002444 ORTHO05D009235 5.1e-46 189.1 207 46.4
FAN04G0068 Fragaria x ananassa HOM05D002444 ORTHO05D009235 2.8e-44 183.3 234 47.4
CARHR092170 Cardamine hirsuta HOM05D002444 ORTHO05D009235 3.7e-44 183.0 132 63.6
Medtr8g070060 Medicago truncatula HOM05D002444 ORTHO05D009235 3.7e-44 183.0 178 48.3
AUR62016136 Chenopodium quinoa HOM05D000356 ORTHO05D000265 1.5e-42 177.6 123 66.7
VMungo0251G0274 Vigna mungo HOM05D002444 ORTHO05D009235 2.6e-42 176.8 174 49.4
ATR0743G013 Amborella trichopoda HOM05D002444 ORTHO05D009235 4.5e-42 176.0 181 48.6
Psat4g114600 Pisum sativum HOM05D002444 ORTHO05D009235 1.7e-41 174.1 167 49.7
ECA233G1761 Erigeron canadensis HOM05D002444 ORTHO05D004748 1.7e-36 157.5 109 66.1
Ciclev10006939m.g Citrus clementina HOM05D002444 ORTHO05D009235 3.4e-34 149.8 92 73.9
COL.COLO4_36843 Corchorus olitorius HOM05D002444 ORTHO05D009235 1.4e-32 144.4 167 46.7
Os12g0557800 Oryza sativa ssp. japonica HOM05D002444 ORTHO05D009235 1.9e-32 144.1 193 38.9
SEGI_18637 Sequoiadendron giganteum HOM05D002444 ORTHO05D009235 1.8e-30 137.5 156 41.7
Migut.G00097 Erythranthe guttata HOM05D002444 ORTHO05D009235 7.4e-29 132.1 178 43.8
MBI06_g47128_MAGBIO Magnolia biondii HOM05D002444 ORTHO05D009235 3.7e-28 129.8 264 35.6
AT3G16890 Arabidopsis thaliana HOM05D002444 ORTHO05D009235 1.8e-27 127.5 79 73.4
Zm00001eb028360 Zea mays HOM05D002444 ORTHO05D009235 7.0e-27 125.6 147 41.5
AUR62043773 Chenopodium quinoa HOM05D002444 ORTHO05D009235 1.6e-23 114.4 72 73.6
CARHR155470 Cardamine hirsuta HOM05D002444 ORTHO05D009235 3.1e-19 100.1 64 73.4
Lj6C687T3 Lonicera japonica HOM05D002444 ORTHO05D009235 8.0e-15 85.5 50 82.0
TAR365G0161 Trochodendron aralioides HOM05D002444 ORTHO05D009235 3.3e-13 80.1 163 33.7
Aa31LG4G1470 Aethionema arabicum HOM05D006503 ORTHO05D008116 1.0e-09 68.6 169 20.7
A02p22890 Brassica napus HOM05D006503 ORTHO05D008116 1.3e-09 68.2 171 24.0
BraA02t07289Z Brassica rapa HOM05D006503 ORTHO05D008116 1.3e-09 68.2 171 24.0
Lsat_1_v5_gn_6_30921 Lactuca sativa HOM05D006740 ORTHO05D008571 2.2e-09 67.4 206 20.9
Manes.08G089400 Manihot esculenta HOM05D000104 ORTHO05D009920 2.9e-09 67.0 196 25.0
Cpa.g.sc9.15 Carica papaya HOM05D007409 ORTHO05D009264 6.5e-09 65.9 110 28.2
AL2G40180 Arabidopsis lyrata HOM05D006503 ORTHO05D008116 8.5e-09 65.5 171 22.2
Cpa.g.sc58.67 Carica papaya HOM05D000424 ORTHO05D000355 8.5e-09 65.5 128 32.0
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 8.5e-09 65.5 197 24.9
Psat3g158640 Pisum sativum HOM05D000104 ORTHO05D009920 1.5e-08 64.7 229 22.3
Potri.014G056400 Populus trichocarpa HOM05D000104 ORTHO05D009920 1.9e-08 64.3 208 24.5
THA.LOC104817005 Tarenaya hassleriana HOM05D000104 ORTHO05D009920 1.9e-08 64.3 174 27.6
Atru.BG.215.p Acer truncatum HOM05D006740 ORTHO05D008571 2.5e-08 63.9 190 20.5
Pp3c4_14140 Physcomitrium patens HOM05D006999 ORTHO05D008936 2.5e-08 63.9 214 22.4
AT1G79540 Arabidopsis thaliana HOM05D006503 ORTHO05D008116 3.2e-08 63.5 171 21.6
CARHR036700 Cardamine hirsuta HOM05D006503 ORTHO05D008116 3.2e-08 63.5 173 23.1
Cfa008759 Carpinus fangiana HOM05D007202 ORTHO05D009125 3.2e-08 63.5 194 23.7
C02p36700 Brassica napus HOM05D006503 ORTHO05D008116 4.2e-08 63.2 206 20.4
Gohir.A08G137650 Gossypium hirsutum HOM05D000104 ORTHO05D008354 4.2e-08 63.2 197 23.4
ATR0598G005 Amborella trichopoda HOM05D008470 ORTHO05D010644 5.5e-08 62.8 176 24.4
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 5.5e-08 62.8 197 23.9
Gohir.D08G158800 Gossypium hirsutum HOM05D000104 ORTHO05D008354 5.5e-08 62.8 197 23.4
Gorai.004G164900 Gossypium raimondii HOM05D000104 ORTHO05D008354 5.5e-08 62.8 197 23.4
BcaC03g15903 Brassica carinata HOM05D006503 ORTHO05D008116 7.2e-08 62.4 206 20.4
BolC2t09665H Brassica oleracea HOM05D006503 ORTHO05D008116 7.2e-08 62.4 206 20.4
Duzib132G0783 Durio zibethinus HOM05D007202 ORTHO05D009125 7.2e-08 62.4 274 24.1
Os10g0421800 Oryza sativa ssp. japonica HOM05D006008 ORTHO05D007334 7.2e-08 62.4 125 28.8
VMungo1127G1467 Vigna mungo HOM05D006503 ORTHO05D008116 7.2e-08 62.4 129 27.1
CDE05G0100 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 9.4e-08 62.0 141 30.5
Ca_22522_v3 Cicer arietinum L. HOM05D002444 ORTHO05D009235 9.4e-08 62.0 45 64.4
CsaV3_UNG230140 Cucumis sativus L. HOM05D001895 ORTHO05D009264 9.4e-08 62.0 186 23.7
Eucgr.H04031 Eucalyptus grandis HOM05D002444 ORTHO05D009235 9.4e-08 62.0 38 73.7
Cpa.g.sc71.41 Carica papaya HOM05D007128 ORTHO05D009059 1.2e-07 61.6 306 23.2
Gohir.D02G117100 Gossypium hirsutum HOM05D002444 ORTHO05D009235 1.2e-07 61.6 37 75.7
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 1.2e-07 61.6 167 24.6
vmacro19175 Vaccinium macrocarpon HOM05D005764 ORTHO05D006600 1.2e-07 61.6 240 24.6
Medtr7g044790 Medicago truncatula HOM05D000104 ORTHO05D009920 2.1e-07 60.8 226 22.6
TAR623G1644 Trochodendron aralioides HOM05D005973 ORTHO05D007285 2.1e-07 60.8 166 25.9
CsaV3_3G017100 Cucumis sativus L. HOM05D005770 ORTHO05D006702 2.7e-07 60.5 236 25.8
Lsat_1_v5_gn_1_100901 Lactuca sativa HOM05D005973 ORTHO05D007285 2.7e-07 60.5 165 24.8
Sc10g0006710 Simmondsia chinensis HOM05D007202 ORTHO05D009125 2.7e-07 60.5 197 24.9
Aqoxy81s001 Aquilegia oxysepala HOM05D005141 ORTHO05D006250 3.6e-07 60.1 37 70.3
CSS0003119 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 3.6e-07 60.1 182 26.4
CDE05G0489 Ceratophyllum demersum HOM05D007202 ORTHO05D009125 3.6e-07 60.1 183 24.0
Haze_11774 Corylus avellana HOM05D007202 ORTHO05D009125 3.6e-07 60.1 196 23.0
ECA248G3068 Erigeron canadensis HOM05D005973 ORTHO05D007285 3.6e-07 60.1 167 26.3
Sc14g0005840 Simmondsia chinensis HOM05D005973 ORTHO05D007285 3.6e-07 60.1 164 26.8
Haze_02747 Corylus avellana HOM05D000104 ORTHO05D009920 4.7e-07 59.7 196 25.0
Lalb_Chr03g0040111 Lupinus albus HOM05D000104 ORTHO05D009920 4.7e-07 59.7 210 26.2
SEGI_04521 Sequoiadendron giganteum HOM05D005337 ORTHO05D009920 4.7e-07 59.7 158 21.5
arahy.Tifrunner.gnm1.ann1.U9PBTF Arachis hypogaea HOM05D007202 ORTHO05D009125 6.1e-07 59.3 243 22.2
Gorai.013G105500 Gossypium raimondii HOM05D002444 ORTHO05D009235 6.1e-07 59.3 39 66.7
QL04p067861 Quercus lobata HOM05D005764 ORTHO05D006600 6.1e-07 59.3 245 24.5
Thecc.01G387700 Theobroma cacao HOM05D000104 ORTHO05D009920 6.1e-07 59.3 197 22.8
TWI53G0827 Tripterygium wilfordii HOM05D007202 ORTHO05D009125 6.1e-07 59.3 230 22.2
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 8.0e-07 58.9 243 22.2
CSS0046383 Camellia sinensis var. sinensis HOM05D007128 ORTHO05D009059 8.0e-07 58.9 182 25.8
Lj6C61T6 Lonicera japonica HOM05D007128 ORTHO05D009059 8.0e-07 58.9 179 26.3
Prupe.2G122500 Prunus persica HOM05D000104 ORTHO05D009920 8.0e-07 58.9 199 24.1
Atru.BG.296.p Acer truncatum HOM05D005973 ORTHO05D007285 1.0e-06 58.5 170 25.3
MD06G1131900 Malus domestica HOM05D005764 ORTHO05D006600 1.0e-06 58.5 261 24.1
CDE04G2722 Ceratophyllum demersum HOM05D008470 ORTHO05D010644 1.4e-06 58.2 171 25.1
Cc09_g07760 Coffea canephora HOM05D005973 ORTHO05D007285 1.4e-06 58.2 114 31.6
SalBow6G4098 Salvia bowleyana HOM05D006503 ORTHO05D008116 1.4e-06 58.2 159 26.4
SalBow6G5105 Salvia bowleyana HOM05D006503 ORTHO05D008116 1.4e-06 58.2 159 26.4
CDE05G3024 Ceratophyllum demersum HOM05D006740 ORTHO05D008571 1.8e-06 57.8 200 22.0
Eucgr.H03429 Eucalyptus grandis HOM05D000424 ORTHO05D000355 1.8e-06 57.8 126 31.7
arahy.Tifrunner.gnm1.ann1.W2W9XI Arachis hypogaea HOM05D000104 ORTHO05D009920 3.0e-06 57.0 92 33.7
Nitab4.5_0000103g0110 Nicotiana tabacum HOM05D000104 ORTHO05D009920 3.0e-06 57.0 93 34.4
Nitab4.5_0001130g0070 Nicotiana tabacum HOM05D000104 ORTHO05D009920 3.0e-06 57.0 93 34.4
TAR365G0952 Trochodendron aralioides HOM05D002444 ORTHO05D009235 3.0e-06 57.0 37 70.3
CAN.G14.21 Capsicum annuum HOM05D001779 ORTHO05D001753 4.0e-06 56.6 96 35.4
CAN.G771.41 Capsicum annuum HOM05D006740 ORTHO05D008571 4.0e-06 56.6 150 22.0
Eucgr.J01726 Eucalyptus grandis HOM05D005973 ORTHO05D007285 4.0e-06 56.6 75 36.0
SalBow6G5562 Salvia bowleyana HOM05D001779 ORTHO05D001753 4.0e-06 56.6 101 32.7
Sed0014952 Sechium edule HOM05D000424 ORTHO05D000355 4.0e-06 56.6 111 29.7
QL07p033370 Quercus lobata HOM05D020603 ORTHO05D019575 5.2e-06 56.2 102 29.4
Sed0019079 Sechium edule HOM05D006740 ORTHO05D008571 5.2e-06 56.2 143 21.0
Hma1.2p1_1014F.1_g247820 Hydrangea macrophylla HOM05D000104 ORTHO05D009920 6.8e-06 55.8 93 33.3
Lalb_Chr07g0187591 Lupinus albus HOM05D006740 ORTHO05D008571 6.8e-06 55.8 183 22.4
AUR62026807 Chenopodium quinoa HOM05D005973 ORTHO05D007285 8.8e-06 55.5 75 36.0
Ca_23477_v3 Cicer arietinum L. HOM05D000104 ORTHO05D009920 8.8e-06 55.5 92 33.7
DCAR_005541 Daucus carota HOM05D007128 ORTHO05D009059 8.8e-06 55.5 169 24.9
Hma1.2p1_1112F.1_g258610 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 8.8e-06 55.5 213 22.5
Peaxi162Scf00087g00126 Petunia axillaris HOM05D005973 ORTHO05D007285 8.8e-06 55.5 75 34.7
Peaxi162Scf00126g01125 Petunia axillaris HOM05D001779 ORTHO05D001753 8.8e-06 55.5 95 34.7
Solyc01g057200.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 8.8e-06 55.5 95 34.7
Sopen03g025210 Solanum pennellii HOM05D000104 ORTHO05D009920 8.8e-06 55.5 93 34.4


User provided reference genes

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