Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
unitig_748.g7680 Utricularia gibba HOM05D003427 ORTHO05D003927 8.9e-54 213.4 111 100.0
unitig_32.g11457 Utricularia gibba HOM05D003427 ORTHO05D003927 1.2e-21 106.7 79 69.6
MSTRG.1470 Avicennia marina HOM05D003427 ORTHO05D003927 1.6e-15 86.3 109 48.6
SalBow7G0329 Salvia bowleyana HOM05D003427 ORTHO05D003927 2.8e-15 85.5 79 57.0
Hund16838 Selenicereus undatus HOM05D003427 ORTHO05D003927 9.0e-14 80.5 76 53.9
Lj4A597T12 Lonicera japonica HOM05D003427 ORTHO05D003927 1.2e-13 80.1 76 55.3
Lalb_Chr23g0270911 Lupinus albus HOM05D003427 ORTHO05D003927 1.2e-13 80.1 81 53.1
Lalb_Chr23g0270941 Lupinus albus HOM05D003427 ORTHO05D003927 1.2e-13 80.1 81 53.1
SGA_v2.0_scaffold52G18992 Striga asiatica HOM05D003427 ORTHO05D003927 1.2e-13 80.1 79 54.4
EL10Ac1g00015 Beta vulgaris HOM05D003427 ORTHO05D003927 1.5e-13 79.7 76 53.9
Actinidia23060 Actinidia chinensis HOM05D003427 ORTHO05D003927 2.0e-13 79.3 81 53.1
EL10Ac7g18243 Beta vulgaris HOM05D003427 ORTHO05D003927 2.0e-13 79.3 76 52.6
AUR62004716 Chenopodium quinoa HOM05D003427 ORTHO05D003927 2.0e-13 79.3 79 51.9
AUR62023631 Chenopodium quinoa HOM05D003427 ORTHO05D003927 2.0e-13 79.3 79 51.9
Hund16834 Selenicereus undatus HOM05D003427 ORTHO05D003927 2.0e-13 79.3 76 52.6
VMungo1309G2531 Vigna mungo HOM05D003427 ORTHO05D003927 2.6e-13 79.0 86 52.3
Ciclev10001037m.g Citrus clementina HOM05D003427 ORTHO05D003927 3.4e-13 78.6 109 44.0
MSTRG.25396 Avicennia marina HOM05D003427 ORTHO05D003927 7.6e-13 77.4 79 51.9
Dinv27352 Davidia involucrata HOM05D003427 ORTHO05D003927 7.6e-13 77.4 79 50.6
Glyma.06G110500 Glycine max HOM05D003427 ORTHO05D003927 7.6e-13 77.4 81 50.6
Hma1.2p1_0523F.1_g172050 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 7.6e-13 77.4 79 53.2
Lj1g0010808 Lotus japonicus HOM05D003427 ORTHO05D003927 7.6e-13 77.4 81 51.9
CSS0043512 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.0e-12 77.0 81 51.9
CSS0048113 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.0e-12 77.0 81 51.9
Hma1.2p1_0009F.1_g006290 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.0e-12 77.0 79 51.9
TAR381G1219 Trochodendron aralioides HOM05D003427 ORTHO05D003927 1.0e-12 77.0 79 50.6
CSS0044236 Camellia sinensis var. sinensis HOM05D003427 ORTHO05D003927 1.3e-12 76.6 81 50.6
CANSAT56G1577 Cannabis sativa HOM05D003427 ORTHO05D003927 1.3e-12 76.6 79 54.4
CANSAT56G1611 Cannabis sativa HOM05D003427 ORTHO05D003927 1.3e-12 76.6 79 54.4
FAN15G0165 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.3e-12 76.6 79 51.9
Glyma.04G252000 Glycine max HOM05D003427 ORTHO05D003927 1.3e-12 76.6 79 50.6
Phvul.009G122400 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 1.3e-12 76.6 81 50.6
QL07p045468 Quercus lobata HOM05D003427 ORTHO05D003927 1.7e-12 76.3 109 45.0
AUR62036406 Chenopodium quinoa HOM05D003427 ORTHO05D003927 2.2e-12 75.9 79 49.4
AUR62036452 Chenopodium quinoa HOM05D003427 ORTHO05D003927 2.2e-12 75.9 79 49.4
AT2G41705 Arabidopsis thaliana HOM05D003427 ORTHO05D003927 2.9e-12 75.5 79 53.2
RcHm_v2.0_Chr6g0295111 Rosa chinensis HOM05D003427 ORTHO05D003927 2.9e-12 75.5 79 50.6
Sc01g0001400 Simmondsia chinensis HOM05D003427 ORTHO05D003927 2.9e-12 75.5 109 43.1
Haze_00493 Corylus avellana HOM05D003427 ORTHO05D003927 3.8e-12 75.1 79 51.9
Thecc.08G120400 Theobroma cacao HOM05D003427 ORTHO05D003927 3.8e-12 75.1 109 41.3
Atru.chr13.1391 Acer truncatum HOM05D003427 ORTHO05D003927 5.0e-12 74.7 79 50.6
ECA246G0604 Erigeron canadensis HOM05D003427 ORTHO05D003927 5.0e-12 74.7 79 53.2
TAR381G0480 Trochodendron aralioides HOM05D003427 ORTHO05D003927 5.0e-12 74.7 79 50.6
arahy.Tifrunner.gnm1.ann1.81342Q Arachis hypogaea HOM05D003427 ORTHO05D003927 6.5e-12 74.3 79 49.4
arahy.Tifrunner.gnm1.ann1.WPHY5E Arachis hypogaea HOM05D003427 ORTHO05D003927 6.5e-12 74.3 79 49.4
COL.COLO4_38335 Corchorus olitorius HOM05D003427 ORTHO05D003927 6.5e-12 74.3 79 51.9
FAN15G0544 Fragaria x ananassa HOM05D003427 ORTHO05D003927 8.5e-12 73.9 79 50.6
Lalb_Chr11g0065761 Lupinus albus HOM05D003427 ORTHO05D003927 8.5e-12 73.9 81 51.9
Medtr3g072830 Medicago truncatula HOM05D003427 ORTHO05D003927 8.5e-12 73.9 82 50.0
SGA_v2.0_scaffold24G10480 Striga asiatica HOM05D003427 ORTHO05D003927 8.5e-12 73.9 79 51.9
HPP92_012116 Vanilla planifolia HOM05D003427 ORTHO05D003927 8.5e-12 73.9 79 48.1
HPP92_012126 Vanilla planifolia HOM05D003427 ORTHO05D003927 8.5e-12 73.9 79 48.1
AL4G40010 Arabidopsis lyrata HOM05D003427 ORTHO05D003927 1.1e-11 73.6 79 51.9
FvH4_2g26430 Fragaria vesca HOM05D003427 ORTHO05D003927 1.1e-11 73.6 79 50.6
FAN24G2254 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.1e-11 73.6 79 50.6
FAN24G2318 Fragaria x ananassa HOM05D003427 ORTHO05D003927 1.1e-11 73.6 79 50.6
Hma1.2p1_0009F.1_g006283 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.1e-11 73.6 79 49.4
Lj3g0027376 Lotus japonicus HOM05D003427 ORTHO05D003927 1.1e-11 73.6 79 51.9
vmacro12551 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 1.1e-11 73.6 79 49.4
FvH4_2g13600 Fragaria vesca HOM05D003427 ORTHO05D003927 1.4e-11 73.2 79 50.6
Oeu050892.2 Olea europaea HOM05D003427 ORTHO05D003927 1.4e-11 73.2 76 50.0
RcHm_v2.0_Chr6g0275211 Rosa chinensis HOM05D003427 ORTHO05D003927 1.4e-11 73.2 109 44.0
TPR.G19881 Trifolium pratense HOM05D003427 ORTHO05D003927 1.4e-11 73.2 82 50.0
arahy.Tifrunner.gnm1.ann1.1IHI4J Arachis hypogaea HOM05D003427 ORTHO05D003927 1.9e-11 72.8 79 48.1
arahy.Tifrunner.gnm1.ann1.R476QE Arachis hypogaea HOM05D003427 ORTHO05D003927 1.9e-11 72.8 79 48.1
Hma1.2p1_0009F.1_g006270 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 1.9e-11 72.8 81 50.6
Medtr3g007470 Medicago truncatula HOM05D003427 ORTHO05D003927 1.9e-11 72.8 79 53.2
Rhsim06G0106600 Rhododendron simsii HOM05D003427 ORTHO05D003927 1.9e-11 72.8 79 51.9
CARHR136800 Cardamine hirsuta HOM05D003427 ORTHO05D003927 2.5e-11 72.4 79 51.9
PSO384G4155 Papaver somniferum HOM05D003427 ORTHO05D003927 2.5e-11 72.4 109 43.1
TWI74G0994 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 2.5e-11 72.4 76 51.3
Cfa015981 Carpinus fangiana HOM05D003427 ORTHO05D003927 3.2e-11 72.0 79 50.6
Hma1.2p1_0009F.1_g006310 Hydrangea macrophylla HOM05D003427 ORTHO05D003927 3.2e-11 72.0 79 49.4
Rhsim10G0043500 Rhododendron simsii HOM05D003427 ORTHO05D003927 3.2e-11 72.0 79 49.4
arahy.Tifrunner.gnm1.ann1.T4K93Z Arachis hypogaea HOM05D003427 ORTHO05D003927 4.2e-11 71.6 79 48.1
Cc06_g13570 Coffea canephora HOM05D003427 ORTHO05D003927 4.2e-11 71.6 79 50.6
MD05G1028200 Malus domestica HOM05D003427 ORTHO05D003927 4.2e-11 71.6 79 49.4
Nitab4.5_0006276g0030 Nicotiana tabacum HOM05D003427 ORTHO05D003927 4.2e-11 71.6 79 48.1
Os10g0567000 Oryza sativa ssp. japonica HOM05D003427 ORTHO05D003927 4.2e-11 71.6 79 51.9
QL04p060321 Quercus lobata HOM05D003427 ORTHO05D003927 4.2e-11 71.6 109 43.1
TWI12G1192 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 4.2e-11 71.6 109 43.1
vmacro20081 Vaccinium macrocarpon HOM05D003427 ORTHO05D003927 4.2e-11 71.6 109 40.4
CiPaw.05G226400 Carya illinoinensis HOM05D003427 ORTHO05D003927 5.5e-11 71.2 81 51.9
TWI56G0570 Tripterygium wilfordii HOM05D003427 ORTHO05D003927 5.5e-11 71.2 109 42.2
arahy.Tifrunner.gnm1.ann1.X2WTDQ Arachis hypogaea HOM05D003427 ORTHO05D003927 7.2e-11 70.9 79 48.1
Carub.0004s2398 Capsella rubella HOM05D003427 ORTHO05D003927 7.2e-11 70.9 79 50.6
Migut.C01159 Erythranthe guttata HOM05D003427 ORTHO05D003927 7.2e-11 70.9 109 44.0
MD15G1354200 Malus domestica HOM05D003427 ORTHO05D003927 7.2e-11 70.9 79 48.1
Prupe.1G502900 Prunus persica HOM05D003427 ORTHO05D003927 7.2e-11 70.9 78 48.7
RhsimUnG0120600 Rhododendron simsii HOM05D003427 ORTHO05D003927 7.2e-11 70.9 79 48.1
SalBow7G2208 Salvia bowleyana HOM05D003427 ORTHO05D003927 7.2e-11 70.9 106 42.5
Ca_15210_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 9.4e-11 70.5 81 49.4
Duzib116G0521 Durio zibethinus HOM05D003427 ORTHO05D003927 9.4e-11 70.5 109 42.2
MD15G1354500 Malus domestica HOM05D003427 ORTHO05D003927 9.4e-11 70.5 79 49.4
Peaxi162Scf00402g00076 Petunia axillaris HOM05D003427 ORTHO05D003927 9.4e-11 70.5 79 48.1
ClCG03G009520 Citrullus lanatus HOM05D003427 ORTHO05D003927 1.2e-10 70.1 109 40.4
Potri.002G086800 Populus trichocarpa HOM05D003427 ORTHO05D003927 1.2e-10 70.1 109 42.2
Sopen11g008180 Solanum pennellii HOM05D003427 ORTHO05D003927 1.2e-10 70.1 79 48.1
PGSC0003DMG400012073 Solanum tuberosum HOM05D003427 ORTHO05D003927 1.6e-10 69.7 79 49.4
TPR.G39483 Trifolium pratense HOM05D003427 ORTHO05D003927 1.6e-10 69.7 81 49.4
Solyc11g013120.2 Solanum lycopersicum HOM05D003427 ORTHO05D003927 2.1e-10 69.3 79 48.1
MELO3C003029.2 Cucumis melo HOM05D003427 ORTHO05D003927 2.7e-10 68.9 109 40.4
Medtr3g072840 Medicago truncatula HOM05D003427 ORTHO05D003927 2.7e-10 68.9 80 48.8
Sabra05G0131700 Salix brachista HOM05D003427 ORTHO05D003927 2.7e-10 68.9 79 49.4
Potri.005G174600 Populus trichocarpa HOM05D003427 ORTHO05D003927 3.6e-10 68.6 109 40.4
Aqoxy1G02472 Aquilegia oxysepala HOM05D003427 ORTHO05D003927 4.6e-10 68.2 79 45.6
Ca_14032_v3 Cicer arietinum L. HOM05D003427 ORTHO05D003927 4.6e-10 68.2 73 53.4
HanXRQChr17g0537311 Helianthus annuus HOM05D003427 ORTHO05D003927 4.6e-10 68.2 79 46.8
Lsat_1_v5_gn_3_20261 Lactuca sativa HOM05D003427 ORTHO05D003927 4.6e-10 68.2 79 48.1
Mapoly0005s0025 Marchantia polymorpha HOM05D003427 ORTHO05D003927 4.6e-10 68.2 79 50.6
Sabra05G0131500 Salix brachista HOM05D003427 ORTHO05D003927 6.1e-10 67.8 79 48.1
A05p02420 Brassica napus HOM05D003427 ORTHO05D003927 7.9e-10 67.4 79 48.1
BraA05t19236Z Brassica rapa HOM05D003427 ORTHO05D003927 7.9e-10 67.4 79 48.1
ECA233G4311 Erigeron canadensis HOM05D001171 ORTHO05D006126 7.9e-10 67.4 107 42.1
C04p02870 Brassica napus HOM05D003427 ORTHO05D003927 1.0e-09 67.0 79 48.1
CsaV3_5G023150 Cucumis sativus L. HOM05D003427 ORTHO05D003927 1.0e-09 67.0 109 40.4
Phvul.003G010800 Phaseolus vulgaris HOM05D003427 ORTHO05D003927 1.0e-09 67.0 79 48.1
Hund27042 Selenicereus undatus HOM05D003427 ORTHO05D003927 1.0e-09 67.0 76 44.7
Atru.chr13.1350 Acer truncatum HOM05D003427 ORTHO05D003927 1.4e-09 66.6 73 49.3
BcaB06g29198 Brassica carinata HOM05D003427 ORTHO05D003927 1.4e-09 66.6 79 49.4
VMungo1215G1715 Vigna mungo HOM05D003427 ORTHO05D003927 1.4e-09 66.6 79 48.1
BcaC02g12787 Brassica carinata HOM05D003427 ORTHO05D003927 1.8e-09 66.2 79 46.8
Nn5g28144 Nelumbo nucifera HOM05D003427 ORTHO05D003927 1.8e-09 66.2 109 39.4
Sed0011022 Sechium edule HOM05D003427 ORTHO05D003927 1.8e-09 66.2 79 45.6
BcaNung06817 Brassica carinata HOM05D003427 ORTHO05D003927 2.3e-09 65.9 79 48.1
Gohir.A06G042200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 2.3e-09 65.9 76 47.4
Gohir.D06G043200 Gossypium hirsutum HOM05D003427 ORTHO05D003927 2.3e-09 65.9 76 47.4
Gorai.010G048400 Gossypium raimondii HOM05D003427 ORTHO05D003927 2.3e-09 65.9 76 47.4
Manes.18G074712 Manihot esculenta HOM05D003427 ORTHO05D003927 2.3e-09 65.9 109 39.4
Sp4g23950 Schrenkiella parvula HOM05D003427 ORTHO05D003927 3.0e-09 65.5 81 48.1
Zm00001eb390680 Zea mays HOM05D003427 ORTHO05D003927 3.9e-09 65.1 79 48.1
BolC4t21927H Brassica oleracea HOM05D003427 ORTHO05D003927 5.1e-09 64.7 79 46.8
CAN.G134.189 Capsicum annuum HOM05D003427 ORTHO05D003927 6.7e-09 64.3 79 44.3
THA.LOC104800187 Tarenaya hassleriana HOM05D003427 ORTHO05D003927 6.7e-09 64.3 79 46.8
CiPaw.05G226300 Carya illinoinensis HOM05D003427 ORTHO05D003927 8.8e-09 63.9 81 46.9
GSVIVG01008915001 Vitis vinifera HOM05D003427 ORTHO05D003927 8.8e-09 63.9 79 43.0
Thhalv10016628m.g Eutrema salsugineum HOM05D003427 ORTHO05D003927 1.9e-08 62.8 79 46.8
BcaC02g07297 Brassica carinata HOM05D003427 ORTHO05D003927 2.5e-08 62.4 79 46.8
C04p69170 Brassica napus HOM05D003427 ORTHO05D003927 2.5e-08 62.4 79 46.8
BraA04t18633Z Brassica rapa HOM05D003427 ORTHO05D003927 2.5e-08 62.4 79 46.8
AagrBONN_evm.TU.Sc2ySwM_117.415 Anthoceros agrestis HOM05D003427 ORTHO05D003927 5.7e-08 61.2 79 43.0
A04p31750 Brassica napus HOM05D003427 ORTHO05D003927 7.4e-08 60.8 79 45.6
BolC4t28415H Brassica oleracea HOM05D003427 ORTHO05D003927 1.3e-07 60.1 79 45.6
Eucgr.F04372 Eucalyptus grandis HOM05D003427 ORTHO05D003927 4.8e-07 58.2 55 54.5
Aa31LG1G23720 Aethionema arabicum HOM05D003427 ORTHO05D003927 8.2e-07 57.4 106 38.7


User provided reference genes

Program Settings